cov    pid  1 [        .         .         .         .         :         .         .         . 80 
 1 ECD796_8       100.0% 100.0%    EYLSPLDITAAQFKVLCSIRCAA---CITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNP----NDKRGVLVKLTTG    
 2 MARR_SALTY     100.0%  91.1%    NYLSPLDITATQFKVLCSIRCAG---CITPVELKKVLSVDLGALTRMLDRLLCKGWIERLPNP----NDKRGVLVKLTPD    
 3 PECS_ERWCH     100.0%  24.0%    KVFSKYKLSAREFDILATLRRRGAPYAYSPSQIVNALMINNSTLTSRLDRLEQAGWLRRMPIE----GDRRSVNIQLTDE    
 4 O31592         100.0%  24.8%    IVLEPFDITVLQYLLMFKIHQSG---STPLSKLAMSLDLKPASVTRMTDILYKRQLMNRYDSP----DDRRIVMIQLTEE    
 5 PAPX_ECOLI      99.0%  25.2%    EFFGAYGINHSVYMVLAILSMEEQ-HCLSPSEISQKLQFTRTNITRITDFLEKAGYIKRTDSR----EDRRTKKISLTSE    
 6 Q47532          99.0%  26.2%    EFLGAYGINHSAYMVLTTLFAAEN-HCLSPSEISQKLQFTRTNITRITDFLEKAGYVKRTDSR----EDRRAKKISLTSE    
 7 O31541         100.0%  26.2%    HYFAGRGLSEGKFKILMLLFDAKD-HRLSPTELAKRSNVTKATITGLLDGLARDGFVSRRHHT----EDKRKISIELTTE    
 8 PRSX_ECOLI      99.0%  26.2%    EFLGAYGINHSVYMVLTTLFTAES-HCLSPSEISQKLQFTRTNITRITDFLEKTGYVKRTDSR----EDRRAKKISLTSE    
 9 O54278          99.0%  23.8%    KELKSFGLTYSQYLVLLSLWEEN---PQTLHSIGQKLDLSSNTLTPLLKRLEQSGWVTRQKSD----QDKRQLIVSLTQK    
10 P94578          99.0%  28.7%    EQLEPFGLYSSQWSVLYCLRTIG---PMTQKEIWSYLNVEAPTVTRTIKRLEENGWVQRRQG-----EDKREKLVVLTKE    
11 SLYA_SALTY     100.0%  21.6%    HRLKPLELTQTHWVTLHNIHQLP--PDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCA----SDRRAKRIKLTEK    
12 MEXR_PSEAE      98.0%  22.2%    --CQRLDLTPPDVHVLKLIDEQR---GLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNP----SDQRSFQLFLTDE    
13 ECDNASLYA_     100.0%  21.6%    HRLKPLELTQTHWVTLHNIHQLP--PDQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCA----SDRRAKRIKLTEK    
14 P96708         100.0%  25.7%    KFEACTGISQSRLELLTLLYHAD---EISQSDLQKKVNIDSAAVTRHLKQLESKGMVSRRRKP----EDNRITLVRLTDQ    
15 O34777         100.0%  27.7%    PLLDKLNITYPQYLALLLLWEHE---TLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSE----EDERSVLISLTED    
16 O05984          99.0%  22.8%    KELKSFGLTYSQYLVLLSLWEEI---LKHYIQLVINWNLSSNTLTPLLKRLEQSGWVTRQKSD----QDKRQLIVSLTQK    
17 P71672         100.0%  26.7%    IAQVDENITIPQFRTLVILSNHG---PINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHP----TSRRELLAALTKR    
18 P70993          99.0%  22.0%    -ATVPKHVNNVRGFILRIIYRHG---SCTIKDILKEVTLSPSATTTALNHLEQEGFIERSRNN----NDRRTVWITLSES    
19 O50574          99.0%  24.0%    -EKLEHNLTGEQFFVLNTLEQKG---RITSSQLAEELQVKPSAITAMVDRLLKNDFVIRERDE----KDRRAVYVRISDE    
20 P74870         100.0%  28.2%    KMLKAQGINETLFMALITLESQEN-HSIQPSELSCALGSSRTNATRIADELEKRGWIERRESD----NDRRCLHLQLTEK    
21 O26413         100.0%  24.8%    RELGHLNLTDAQVACLLRIHREP---GIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDP----ENRRRYILEVTRR    
22 O31564         100.0%  23.8%    SEWMKLDMSMPQMKVLMLLNNHG---TLKVSDIAEKMGASLSNTTGLLDRLEKSGFVKRSHSE----EDRRSVVVQLTEN    
23 YYBA_BACSU     100.0%  18.8%    IEFKDLDLTRGQYLYLVRIYENP---GIIQEKLAEMIKVDRTTAARAIKKLEMQGFIQKLPDE----QNKKIKKLFPTEK    
24 P70734         100.0%  22.8%    KLLSPLGLTYPQYLVMLVLWEKD---QLTVSEIGSRLFLESSTLTPLLKKLEHLGLLSRKRST----RDERQVIITLSSQ    
25 O32181         100.0%  24.8%    ESMEKQGVTPAQLFVLASLKKHG---SLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNT----KDRRVIDLSLTDE    
26 YZ08_MYCTU     100.0%  22.8%    FRNPSSPVSLSQLSALTTLANEG---AMTPGALAIRERVRPPSMTRVIASLADMGFVDRAPHP----IDGRQVLVSVSES    
27 O53800          99.0%  21.4%    TALRPYDLSFSRFELLRLLAFSRIG-ALPITKASDRLQVHVTSVTHAIRRLEADGLVRRVPHP----TDGRTTLVQITEL    
28 YPOP_BACSU      99.0%  17.0%    -EILDKELSRNEFTILRILSEQG---PKKVTEFAPILEVSASHITAVTDALVEKEWITRIRSK----EDRRIIRIHITEA    
29 O33060         100.0%  22.8%    FRNPQSPVSLSQLSALTTLANEG---AMTPGALAIRERVRPPSMTRVIASLADMGFVDREPHP----VDGRQVLVSVSQS    
30 HPCR_ECOLI     100.0%  18.8%    PIVKRHNLTEQQWRIVRILAESP---SMDFHDLAYRACILRPSLTGILTRMERDGLVLRLKPI----NDQRKLYISLTKE    
31 O33636         100.0%  17.8%    RFGQRTDITSEQLELLRILYNYD---RLSQYDLTMKISREQSIVSRWIKKLVQKGYIMSQQSH----EDLRCKELILTEE    
32 YX18_MYCTU     100.0%  23.8%    AALSPLGLTLPEFVCLRMLSQSP---GLSSAELARHASVTPQAMNTVLRKLEDAGAVARPASV----SSGRSLPATLTAR    
33 O07458         100.0%  21.9%    RAVEAEGLTTQQWAVLGALSRPTVANGMSVGDLARYLMVSRQNLTGLIGRMERDGHVAVVPDE----RDRRSRLVTMTKS    
34 O85850         100.0%  18.8%    ASTAKFGLTRTQWRALAYIFRTP---GLTQTELAKCLELERASVGHVIDQLEKADYVERRAVE----GNRRVWTLHLRPK    
35 Q53036         100.0%  25.7%    NVVDREKLTPDQWYVLDIIVRND---GIAMTEIARSLGSPAPTTTKHVDRLVTTALAFRLPDH----ADRRKVLVHASKR    
36 O33817         100.0%  17.8%    TITTTEGVTPGLYGMLQVIANNP---GLSQSALAVAMDVDRSSIVKVVNQLEEKGLIVRDTSP----TDRRRYCLHMTPP    
37 O34949         100.0%  17.8%    RDSKEHGFNPTEFAVLELLYTRG---PQKLQQIGSRLLLVSGNVTYVIDKLERNGFLVREQDP----KDKRSVYAHLTDK    
38 YWAE_BACSU     100.0%  13.9%    EVLSTYNLSWTAFSILYDLWVWG---ALETRKIAELSGISTATASNVIKTLEKKSFCRKSIDT----RDRRLVFVSITDS    
39 P94314         100.0%  18.4%    QIFNDYGLTEAQPKILYILGFNE---GIVQKDFAKLCAIKPSTMTVQLARLEKDGLIRRESCYIS--GGKKAYRVYLTKR    
40 P42103         100.0%  18.8%    SEKRTGNLERSSYLLLRQLDEFG---PARVKELAESFKLDISTLSRQAAALEAKELIYRFSDP----SDGRVSLFTITKL    
41 PETP_RHOCA     100.0%  22.8%    RILDQHDYGRAHHRAIHFINREP---GLTVTTLISVLGVTKQSLNRVLRTLIDDGLVESRVGR----RDKRERHLHLTEK    
42 O07562         100.0%  14.4%    EHGSKSQLTMTEIHVLSCVGDNE---PINVTSIAEKMNTTKATVSRISTKLLGAGFLHRTQLS----DNKKEVYFRLTPA    
43 P96705         100.0%  20.4%    NQDVFKHISREQADLLKILKVKG---PTSPGSLAMYQNVHKSAISNRLKKLLEKGLVQWDDCPEK--SDRRSKLINITPS    
44 O31472         100.0%  17.6%    AAAQALGLFPTDLKSADILNEAG---PMTAGELGKKTGLSTGSVTALVDRLEKAGVCGSWKRTP---NDRRRVVIVPLTA    
45 O34692          99.0%  15.2%    HDHLKKDWTLTQLHIVSCIHTSQ---NVNNSFLASRLHISKAAVSKAVHALLKHNIITVTKKP----GNKKEIFYTLTDS    
46 HPR_BACSU      100.0%  15.8%    QWLKPYDLNINEHHILWIAYQLN---GASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRL----NDKRNTYVQLTEE    
47 YVMB_BACSU     100.0%  15.4%    EDVAEIPKNMTSIHVIDCIGQHE---PINNAGIARKMNLSKANVTKISTKLIKEEFINSYQLT----DNKKEVYFKLTRK    
48 P96440          99.0%  20.8%    TKLGVEDIGPAQAMVLLAIGEAE----LSVGELLDRGHYVGSNISYYLKQLADGDYIDRIASQ----RDKRSARIRLSEK    
49 O85236         100.0%  21.4%    AISRKYDVSFEQFLVIEQIIEEE---RKSPSELAVFFKTSLPAVSRKLNLLQSKRLVYKIRGE---QDDQRLMRVNATPE    
50 O27014         100.0%  13.6%    REFREDGITAKQWLFMVILGNVFE-RPPSMQEMADAMSSTHQNVKQLAVRLEDKGLLRIKQDP----ENRRMLRLEPTGR    
   consensus/100%                  .......h.......h..h.............h..........h......h...thh...........s.+...h.....    
   consensus/90%                   ......tls..th.hl..l.t......hp..pl...h.hp.sshs.hhttL.ttthl.p..t.....tstR.h.h.ho.t    
   consensus/80%                   ..ht..sls.sphhhLhhl.pt....shs.tpluphhthp.sshsthhppL.ptshlt+..p.....pDcRthhlplTpp    
   consensus/70%                   p.htthslo.sphhlLhhlhptt...shs.pplupthtlp.sslophlcpLtppGhlpR.ps.....pD+RthhlplTpp    

                     cov    pid 81          .         1         . ] 112
 1 ECD796_8       100.0% 100.0%    GAAICEQCHQLVGQ----DLHQELTKNLTADE    
 2 MARR_SALTY     100.0%  91.1%    GAAICEQCHQRPGQ----DLHQELTKNLTADE    
 3 PECS_ERWCH     100.0%  24.0%    GFALINRVVEEHVE----NERDILSPFSEEEK    
 4 O31592         100.0%  24.8%    GEELIEKAAVQYAK----MGAGLYQKLDTSQL    
 5 PAPX_ECOLI      99.0%  25.2%    GMFFIQRLTLAQN-----TYLKELWSNLTCDE    
 6 Q47532          99.0%  26.2%    GMFFIQRLTLAQS-----MYLKEIWDYLTHDE    
 7 O31541         100.0%  26.2%    GKARLEQFLPGHFS----KISAVMENYSDEEK    
 8 PRSX_ECOLI      99.0%  26.2%    GMFFIQRLTLAQS-----MYLKEIWGYLTHDE    
 9 O54278          99.0%  23.8%    GKEQKQPIYDAISK----CVSED-MNLELYKQ    
10 P94578          99.0%  28.7%    AEKKYEEINVKMLK----FEEELLADFRDEDK    
11 SLYA_SALTY     100.0%  21.6%    AEPLIAEMEEVIHK----TRGEILAGISSEEI    
12 MEXR_PSEAE      98.0%  22.2%    GLAIHQHAEAIMSR----VHDELFAPLTPVEQ    
13 ECDNASLYA_     100.0%  21.6%    AEPLISEMEAVINK----TRAEILHGISAQEL    
14 P96708         100.0%  25.7%    GRERIESSKKEKER----FMKEMLANVSAEER    
15 O34777         100.0%  27.7%    GALLKEKAVDIPGT----ILGLSKQSGEDLKQ    
16 O05984          99.0%  22.8%    GKDQKQPIYDAISR----CVSED-MNLDLYKQ    
17 P71672         100.0%  26.7%    GRDVVRQVTEHRRT----EIARIVEQMAPAER    
18 P70993          99.0%  22.0%    GRGAAEQMIENRQQ----LIDGMFERLTAEEK    
19 O50574          99.0%  24.0%    GRRALKSSVKKRNI----IMEKYMSKLTEEEM    
20 P74870         100.0%  28.2%    GQAFLQEVLPPQHH----CLHQLWSSLSTAEK    
21 O26413         100.0%  24.8%    GEEIIPLILKVEER----WEDLLFRDFTEDER    
22 O31564         100.0%  23.8%    AKKIFRGLYEKGHL----KLKRSLELLSPEEK    
23 YYBA_BACSU     100.0%  18.8%    GKKVYPLLRREGEH----STEVALSGFTSEEK    
24 P70734         100.0%  22.8%    GQELKQQALDIPHQ----IAQASACNLDELMQ    
25 O32181         100.0%  24.8%    GDIKFEEVLAGRKA----IMARYLSFLTEEEM    
26 YZ08_MYCTU     100.0%  22.8%    GAELVKAARRARQE----WLAERLATLNRSER    
27 O53800          99.0%  21.4%    GRSTVEDATVTLN-----EQVFANVGMGAEES    
28 YPOP_BACSU      99.0%  17.0%    GEKVLQHFNEKKTE----YFFKRFDCYTDAEL    
29 O33060         100.0%  22.8%    GAELVKAARRARQE----WLVERLMTLNSDKR    
30 HPCR_ECOLI     100.0%  18.8%    GQALYNRAQTQIEE----AYRQIEAQFTAEKM    
31 O33636         100.0%  17.8%    ARALIQQINTARCE----LIEARCQCLSSDEI    
32 YX18_MYCTU     100.0%  23.8%    GRALAKRAEAVVRA----ADARVLARLTAPQQ    
33 O07458         100.0%  21.9%    GRHVWEVLAQPKIRA---YYGEVLGDFSINDV    
34 O85850         100.0%  18.8%    AIGILPALRAEADV----VYERLLAGISANDI    
35 Q53036         100.0%  25.7%    GGSAHSRLLPLVQQ----VEDEFMDELAIPDR    
36 O33817         100.0%  17.8%    GVQALARIEQAVMR----QDQDFSARLSDAER    
37 O34949         100.0%  17.8%    GNEYLDKIYPIHAL----RIARAFSGLSPDEQ    
38 YWAE_BACSU     100.0%  13.9%    GKQAIEELYPEFHK----GETELIAGMTKDEQ    
39 P94314         100.0%  18.4%    GKEIADSLIERIDN----LEDISFKGFTAKEQ    
40 P42103         100.0%  18.8%    GKQLLKADQQKRLE----RYEQMLKEWSTQEK    
41 PETP_RHOCA     100.0%  22.8%    GAVLERELSEAQRV----RMPAAYRAAGPQAV    
42 O07562         100.0%  14.4%    GKKLHSLHKYYHQKAEQ-RFLSFFDRYTEEEI    
43 P96705         100.0%  20.4%    GEHILEELDSAIFN----ALKPLIDDIDEEHL    
44 O31472         100.0%  17.6%    SKKHIKDLFRPLSE----STMDLCREYTEEEL    
45 O34692          99.0%  15.2%    GRK-LAALHEQLHEKAKEQYKQLFNEFSIDDL    
46 HPR_BACSU      100.0%  15.8%    GTEVFWSLLEEFDP----TRNAVFKGSQPLYH    
47 YVMB_BACSU     100.0%  15.4%    GRRIFDLHEKLHKKKEL-AFYQFLDSFSQEEQ    
48 P96440          99.0%  20.8%    GRQLCAGLRQAAKG----YERALSHGDQDRRN    
49 O85236         100.0%  21.4%    GIETYESIKAELLT---WDAQLKDHDINLMAM    
50 O27014         100.0%  13.6%    FHEFWAGRDERDAA----TLKSLFDSLDDEEV    
   consensus/100%                  ................................    
   consensus/90%                   u..hht.h.................tht..p.    
   consensus/80%                   Gtthhpth...htt....hhtt.htths.tc.    
   consensus/70%                   Gpthhpphhtthpp....hhtphhtthstp-.