cov pid 1 [ . . . . : . . . 80 1 SC1_SCHCO 100.0% 100.0% CN--SGPVQCCNTLVDTKDKHQTNI------VGALLGLDLGSLTGL--AGVNCSPVSVIGVG-----------GNSCSTQ 2 SC4_SCHCO 100.0% 57.1% CN--SGPVQCCNETTTVANAQKQGL------LGGLLGVVVGPITGL--VGLNCSPISVVGVLT----------GNSCTAQ 3 SC3_SCHCO 98.7% 52.6% CT--TGSLSCCNQVQSASSSPVTAL------LG-LLGIVLSDLNVL--VGISCSPLTVIGVG-----------GSGCSAQ 4 HYP1_AGABI 96.1% 37.7% CD--VGEIHCCDTQQTPDHTSAAAS--------GLLGVPINLG-AF--LGFDCTPISVLGVG-----------GNNCAAQ 5 HYP2_AGABI 94.7% 41.6% CN--VGELHCCNTQQTPDHTNAAG---------GLLGAAANVG-AL--LGFDCTPISVIGIG-----------GNNCAAQ 6 HYP1_PISTI 98.7% 46.8% CN--TGPIQCCNTVATSGSQSGVDE------LLTLLGLSVPVG-TQ--VGASCSPISAVGTGS----------GAQCSGQ 7 RODL_ASPFU 100.0% 16.5% CGD-QAQLSCCNKATYAGDVTDIDEGILAGTLKNLIGGGSGTEGLG--LFNQCSNVDLQIPVIGIPIQALV--NQKCKQN 8 RODL_EMENI 100.0% 17.0% CGD-QAQLSCCNKATYAGDTTTVDEGLLSGALSGLIGAGSGAEGLG--LFDQCSKLDVAVLIG---IQDLV--NQKCKQN 9 HYP2_PISTI 98.7% 44.2% CN--TGTPQCCQQVQQTSDLQQFRS------SFGLVDALAGAS-AL--VGANCNPVSVLGTGN----------GAQCNTQ 10 SSGA_METAN 78.9% 27.5% CD---SGVYCCNKVAQ-----NTG----------IV-VPIDALSST------CGDTLKLVTVDALN--------DKCTSQ 11 MPG1_MAGGR 80.3% 23.0% CGA-EKVVSCCNSKELKNSKSGAEIP------IDVLSG-------------ECKNI--PINILTINQLIPI--NNFCSDT 12 DEWA_EMENI 88.2% 22.7% CN--VGSIACCNSPAETNNDSLLSG--------LLGAGLLNGLSGN--TGSACAKASLIDQLGLLALVDHTEEGPVCKNI 13 RODL_NEUCR 82.9% 15.3% CSIDDYKPYCCQSMSGPAGSPGLLN---------LIPVDLSAS-------LGC-----VVGVI----------GSQCGAS 14 AFHYDROP_1 100.0% 15.5% CG-DQAQLSCCNKATYAGDVTDIDEGILAGTLKNLIGGGSGTEGLG--LFNQCSKLDLQIPVIG--IPIQALVNQKCKQN 15 P78601 96.1% 46.2% CN--TGPIQCCNTVTQASNPVAGLLLG-------LLGIVLQDLNVL--VGLTCSPISIIGLP-----------GNSCNAQ 16 P78602 98.7% 40.3% CN-APNNLECCNSVQAPTNSGLIGT------LLGLLNISVGDITGL--VGLTCNPISLIGGG------------NSCNAQ 17 E339578 96.1% 47.4% CK--TGPVQCCNSVQSSKSPAASLLLG-------LLGIVLQGVAVP--VGLTCNPITVIGVG-----------GNSCSAQ 18 E1191576 94.7% 44.4% CTAVGGDVNCCNSVQDASNPIVGLLAG-------LLGIVLGPIQGL--VGLTCNPISVIGGG------------NSCSSQ 19 E1191568 94.7% 43.2% CTAVGGDVNCCNSLQEASNPIVGLLAG-------LLGIVLGPIQGL--VGLTCNPISIIGGG------------NSCSSQ 20 E1217190 97.4% 42.0% CS--TGPIECCKQVMDSKSPQATELLTKN----GLGLGVLAGVKGL--VGANCSPITAIGIGS----------GSQCSGQ 21 E339577 98.7% 46.2% CN--TGPIQCCNSVQSATSSAAAGP-------LAALGVLSGIASLLGEVGLDCSPLQVIGVG-----------ANSCSSQ consensus/100% Ct.......CCpp.....................hh.h..............C.......................Ctt. consensus/90% Cs...s.ltCCpp.t.stp...h...........llsh..t..........tCs.h.h.h.h............ttCttp consensus/80% Cs...u.lpCCNphttsss...h...........Llshs.ss..h...hh.pCsslshlshs...........sspCssp consensus/70% Cs..suslpCCNpsppsssstsht..........Lluhshsshtsh..lGhsCsslsllsss...........sspCssQ cov pid 81 . 1 ] 104 1 SC1_SCHCO 100.0% 100.0% TVCCEGT-----QFNGLVN--VGC 2 SC4_SCHCO 100.0% 57.1% TVCCDHV-----TQNGLVN--VGC 3 SC3_SCHCO 98.7% 52.6% TVCCENT-----QFNGLIN--IGC 4 HYP1_AGABI 96.1% 37.7% PVCCTGN-----QFTALINA-LDC 5 HYP2_AGABI 94.7% 41.6% PVCCEAN-----EFTGLINA-LSC 6 HYP1_PISTI 98.7% 46.8% TVCCEQN-----EWNGLVN--IGC 7 RODL_ASPFU 100.0% 16.5% IACCQNSP--SDASGSLIGLGLPC 8 RODL_EMENI 100.0% 17.0% IACCQNSP--SSADGNLIGVGLPC 9 HYP2_PISTI 98.7% 44.2% PVCCTSN-----QMLGAVN--MGC 10 SSGA_METAN 78.9% 27.5% TVCCNNV-----QQNGLVN--VAC 11 MPG1_MAGGR 80.3% 23.0% VSCCSGE------QIGLVN--IQC 12 DEWA_EMENI 88.2% 22.7% VACCPEG-------------TTNC 13 RODL_NEUCR 82.9% 15.3% VKCCKDDV-TNTGNSFLIINAANC 14 AFHYDROP_1 100.0% 15.5% IACCQNSP--SDASGSLIGLGLPC 15 P78601 96.1% 46.2% PVCCQNN-----NFNGLIA--IGC 16 P78602 98.7% 40.3% TVCCQNN-----YFGGLIS--IGC 17 E339578 96.1% 47.4% TVCCENN-----NFSGLIA--IGC 18 E1191576 94.7% 44.4% TVCCTGN-----NFSGGLLV-IGC 19 E1191568 94.7% 43.2% TVCCTGN-----NFSGGLLV-IGC 20 E1217190 97.4% 42.0% TVCCQNN-----NFNGVVA--IGC 21 E339577 98.7% 46.2% AACCTGN-----TFNGAVV--LGC consensus/100% ..CC.t...............h.C consensus/90% .sCCpts........shl...hsC consensus/80% ssCCpss.....t.suhls..lsC consensus/70% ssCCpss.....t.sGLls..lsC