Family alignment for the HhH1 domain, displayed in

                       cov    pid  1 [        .         ] 20
  1 Q55769/1-20     100.0% 100.0%    EELESLPGIGPSTAEKIIST   
  2 O84148/1-20     100.0%  45.0%    DELMSIEGIGPKVAASIVAF   
  3 RADA_METJA/1-20 100.0%  50.0%    DDLTQLPGVGPTTAEKLKEA   
  4 O66559/1-20     100.0%  40.0%    EDLLKVKGIGKETADAILLY   
  5 D1035629/1-20   100.0%  45.0%    RELSRLPGIGPKSAQRLAFH   
  6 CME1_BACSU/1-20 100.0%  55.0%    EELQGISGVGPSKAEAIIAY   
  7 O73946/1-20     100.0%  45.0%    EELLKIEGIGVKTVEAIFKF   
  8 O30253/1-20     100.0%  40.0%    AMLTAIPGIGEKKAEKLLDY   
  9 RUVA_HAEIN/1-20 100.0%  35.0%    SKLTKIPGVGKKTAERLLVE   
 10 O28581/1-20     100.0%  45.0%    EELVKLPGIGRKSANVVLAY   
 11 P77987/1-20     100.0%  55.0%    EALLELPGIGPDLADKILEF   
 12 RADA_ARCFU/1-20 100.0%  50.0%    IELEDIPGVGPETARKLREA   
 13 RUVA_TREPA/1-20 100.0%  35.0%    CALQRIPGIGKKTAQRMLLA   
 14 P71728/1-20     100.0%  55.0%    EQLDALPGIGPVTAAAIVAW   
 15 P77987_1/1-20   100.0%  35.0%    LEVMEVPGVGPKTARGLYEA   
 16 Q55703/1-20     100.0%  40.0%    EQLTAIKGIGPWTAQLFLLF   
 17 H64487/1-20     100.0%  40.0%    EELMKVEGVGKERAKKIREV   
 18 P95945/1-20     100.0%  45.0%    DELLKLEGIGEKTADVVLLT   
 19 O51502/1-20     100.0%  35.0%    STLLKIKGIGEKIALNIIEA   
 20 O27507/1-20     100.0%  45.0%    HEIIRVPGIGPKSARRIIEM   
 21 UVRC_SYNY3/1-20 100.0%  40.0%    KQLQEVPGIGPQLAQTIYDY   
 22 4235370/1-20    100.0%  40.0%    EDLLEVEGVGELTARAILNT   
 23 O66880/1-20     100.0%  40.0%    EKLMRLEGIGYKVARSIKEF   
 24 O85197/1-20     100.0%  40.0%    DELKKVSGIGGKTIEKLKDY   
 25 O26901/1-20     100.0%  40.0%    DELKRIDGIGPKMAGAIRRY   
 26 O87703/1-20     100.0%  40.0%    EELMAVPEIGEKMADAITAF   
 27 NOD_DROME/1-20  100.0%  35.0%    KQLQEIPGIGPKSAFSLALH   
 28 O59025/1-20     100.0%  35.0%    AELLEVEGIGAKIVEAILKH   
 29 DPO1_THEAQ/1-20 100.0%  35.0%    DNLPGVKGIGEKTARKLLEE   
 30 O26841/1-20     100.0%  35.0%    KELLKVRGVGPETADSVLLY   
 31 RECR_SYNY3/1-20 100.0%  40.0%    EQLQRLPSVGPKTAQRLALH   
 32 UVRC_HAEIN/1-20 100.0%  50.0%    DEIASVPGISPKLAERIFET   
 33 ADA_MYCTU/1-20  100.0%  50.0%    GQLLALPGVGPWTAEVIAMR   
 34 DNLJ_RHOMR/1-20 100.0%  50.0%    DELAALEGVGPITAESIANW   
 35 O85197_1/1-20   100.0%  40.0%    EELKQVKGLGGKRAQDIIDH   
 36 MAG_SCHPO/1-20  100.0%  35.0%    ERLTQIKGIGRWTVEMLLIF   
 37 O27397/1-20     100.0%  40.0%    ELLLELSGVGPKVADCILLY   
 38 O74103/1-20     100.0%  35.0%    PELMKVEGIGEKIAREIRRV   
 39 YACK_BACSU/1-20 100.0%  45.0%    EELDEVEGIGEVRAQKIKKG   
 40 O31544/1-20     100.0%  30.0%    KKLIKIRGIGPWTVQNVLMF   
 41 D1035526/1-20   100.0%  45.0%    KLLIKAPGIGKKTAQRIILE   
 42 RUVA_HAEIN_1/1- 100.0%  40.0%    RELIKTNGVGPKLALAILSA   
 43 O86259/1-20     100.0%  35.0%    QQLMELKGVGPTTASALVAS   
 44 O25307/1-20     100.0%  45.0%    KELMSLDGVGQKTANVVLSV   
 45 48865/1-20      100.0%  40.0%    TELTDISGVGPSKAESLREA   
 46 O30253_1/1-20   100.0%  35.0%    AELKRVDGIGEKKAREIYRF   
 47 DNLJ_TREPA/1-20 100.0%  35.0%    EDLIEIEHVGNATAKKILEA   
 48 O84243/1-20     100.0%  50.0%    SFLKKLPGIGFKSAEKIAFE   
 49 DNLJ_MYCPN/1-20 100.0%  40.0%    ETLLELPDVGPTVAESLFNW   
 50 RADC_BACSU/1-20 100.0%  50.0%    EELSSIPGIGMVKAIQILAA   
 51 RUVA_HELPY/1-20 100.0%  40.0%    KRLQQVPGIGKKLADKIMVD   
 52 RA51_YEAST/1-20 100.0%  25.0%    KDLLEIKGISEAKADKLLNE   
 53 F64239/1-20     100.0%  35.0%    CRLIELNGIGSKTALNLLNN   
 54 RUVA_TREPA_1/1- 100.0%  40.0%    LSLTKVEGIGPKQALKVLSS   
 55 RECR_BACSU/1-20 100.0%  40.0%    DSFMKLPGIGPKTAVRLAFF   
 56 RADA_METJA_1/1- 100.0%  35.0%    GELTEIDGISEKAAARIIEA   
 57 RUVA_BACSU/1-20 100.0%  40.0%    AFLVKFPGVGKKTARQIILD   
 58 O69642/1-20     100.0%  40.0%    DKLVTLPGVGRKTANVILGN   
 59 DNLJ_HAEIN/1-20 100.0%  35.0%    EELQQVPDVGEVVANRIFIF   
 60 O84703/1-20     100.0%  45.0%    PELTALPGVGRKTASVFLSI   
 61 O28163/1-20     100.0%  50.0%    EYLTSFKGIGRWTAELVLSM   
 62 O66880_1/1-20   100.0%  25.0%    TDILKLPGFGEKSAMNLLKA   
 63 END3_ECOLI/1-20 100.0%  45.0%    AALEALPGVGRKTANVVLNT   
 64 O26541/1-20     100.0%  25.0%    SELDGIRGVGPVRKRALLEH   
 65 RADC_SYNY3/1-20 100.0%  45.0%    QELIAFPGIGPAKATTILAA   
 66 206278/1-20     100.0%  45.0%    AEAKKLPGVGTKIAEKIDEF   
 67 CME1_BACSU_1/1- 100.0%  40.0%    EDITKVSGIGEKSFEKIKSS   
 68 RUVA_MYCLE/1-20 100.0%  40.0%    ASLTRVPGIGKRGAERIVLE   
 69 RUVA_HELPY_1/1- 100.0%  35.0%    ERLLKINGVGGRIALAILSS   
 70 P72464/1-20     100.0%  45.0%    GSLESLKGVGPKTAQVAREA   
 71 O66786/1-20     100.0%  45.0%    GELVKLPGVGRKTANMVIGG   
 72 P77987_2/1-20   100.0%  35.0%    GDLLRLKGFGAKKAERIKEG   
 73 DNLJ_ECOLI/1-20 100.0%  25.0%    GKLTGLERMGPKSAQNVVNA   
 74 P72588/1-20     100.0%  40.0%    PDLEGVYGIGPEIAEAVVNW   
 75 RA51_LYCES/1-20 100.0%  35.0%    KELLQIKGISEAKVDKIIEA   
 76 UVRC_ECOLI/1-20 100.0%  25.0%    SSLETIEGVGPKRRQMLLKY   
 77 O84509/1-20     100.0%  45.0%    KAIASVPGIGKKTAEKLMVD   
 78 O87703_1/1-20   100.0%  25.0%    EQLVGLERMGEKSAANLLAA   
 79 Q53089/1-20     100.0%  25.0%    PDLCAVEGISETMAQSIHDY   
 80 O52282/1-20     100.0%  40.0%    RRLSELPGIGPIIATALVAS   
 81 O26541_1/1-20   100.0%  45.0%    EELASIPGMTREVAERIHRH   
 82 RUVA_BORBU/1-20 100.0%  30.0%    ELVSKIKGIGKKMAGKMFLH   
 83 Q46530/1-20     100.0%  45.0%    EELVLLKGIGTVKAQAIVDY   
 84 B71662/1-20     100.0%  35.0%    DELTKVKGISKSLASMIFNI   
 85 UVRC_MYCTU/1-20 100.0%  35.0%    DEITAVPGIGVATATAVHDA   
 86 G3800758_1/1-20 100.0%  15.0%    RKAMDIEGLGEKLIERLLEK   
 87 RUVA_BACSU_1/1- 100.0%  35.0%    TKLLNVTGIGPKGALAILGS   
 88 RECR_ECOLI/1-20 100.0%  45.0%    EALRCLPGVGPKSAQRMAFT   
 89 206278_1/1-20   100.0%  40.0%    NFLTRVTGIGPSAARKLVDE   
 90 H71695/1-20     100.0%  40.0%    NLLQSVNGIGTKMALSILSN   
 91 O26650/1-20     100.0%  30.0%    DSLLSVEGVGPRTVKLLYEE   
 92 RUVA_BORBU_1/1- 100.0%  35.0%    KELIGVSGVGPRAALRVLSN   
 93 RUVA_SYNY3/1-20 100.0%  30.0%    KQLCQTPGVGKKGAERLALE   
 94 O28814/1-20     100.0%  35.0%    EELAKVPKVGKKIAKRIRRV   
 95 O18475/1-20     100.0%  15.0%    IDLMRIPDLSQKRARALFDA   
 96 O84109/1-20     100.0%  40.0%    ALLSSIKGIGSYTANAILAF   
 97 MUTY_ECOLI/1-20 100.0%  55.0%    EEVAALPGVGRSTAGAILSL   
 98 S62328/1-20     100.0%  40.0%    RDLRSLQRIGPKKAQLIVGW   
 99 RADA_METTH/1-20 100.0%  45.0%    VELEDLPNVGAKTAQKLRDA   
100 DNLJ_RHOMR_1/1- 100.0%  25.0%    EDLLKLEGFAETRARNLLRA   
101 O58476/1-20     100.0%  30.0%    RYLTRFRGIGKWSAELFLMY   
102 DNLJ_RHOMR_2/1- 100.0%  15.0%    RDAMDIEGMGSQVARQLAES   
103 DPO1_ECOLI/1-20 100.0%  25.0%    DNIPGVPGVGEKTAQALLQG   
104 UVRC_ECOLI_1/1- 100.0%  45.0%    EEIAKVPGISQGLAEKIFWS   
105 4235380/1-20    100.0%  25.0%    LYALGLPGVGEVLARNLAAH   
106 DNLJ_ECOLI_1/1- 100.0%  30.0%    EELQKVPDVGIVVASHVHNF   
107 RUVA_SYNY3_1/1- 100.0%  35.0%    GQLMGVTGIGAQLAIALIET   
108 UVRC_PSEFL/1-20 100.0%  25.0%    STLEDVAGVGPKRRRDLLKH   
109 O59025_1/1-20   100.0%  30.0%    IPLMELPMIGRKRARALYNA   
110 UVRC_PSEFL_1/1- 100.0%  40.0%    EEIAKAPGISKKLAELIYAN   
111 O84509_1/1-20   100.0%  40.0%    RLLISFSGIGPKTGLSILNM   
112 O87703_2/1-20   100.0%  10.0%    RAAMNIEGLGEKVVTQLFNA   
113 RPOA_PINTH/1-20 100.0%  20.0%    EDLMRIEHFGKESVEQVLEV   
114 O53261/1-20     100.0%  25.0%    DQLAAVEGVGPTIAAAVTEW   
115 O74036_1/1-20   100.0%  45.0%    IELKEVAGISEGTALKIIQA   
116 O69923/1-20     100.0%  40.0%    PELLELQGVGPITAAQVLVS   
117 O67550/1-20     100.0%  30.0%    DNVPGIEGVGPKTAINILKK   
118 RPOA_MARPO/1-20 100.0%  15.0%    DDLIKIKNFGKKSVEQVLEA   
119 Q53089_1/1-20   100.0%  20.0%    TPLDEIPGVGAARKRALLAH   
120 O24710/1-20     100.0%  25.0%    EDLLEIKNFGQKSAEEVVEA   
121 P78579/1-20     100.0%  35.0%    RLLEQIKGISEQKATKILVE   
122 UVRC_BACSU/1-20 100.0%  25.0%    SVLDDIPGIGEKRKKMLLKH   
123 YBAV_ECOLI/1-20 100.0%  35.0%    EDLKQVPGMGNSLVERNLAV   
124 MAG_YEAST/1-20  100.0%  25.0%    SLVTNVKGIGPWSAKMFLIS   
125 DNLJ_HAEIN_1/1- 100.0%  15.0%    RKAMDIDGVGGKLIEQLVDR   
126 O24954/1-20     100.0%  45.0%    QSLLKLPGIGAYTANAILCF   
127 Q56421/1-20     100.0%  40.0%    EVLMALPGVGPQVAAAVLAL   
128 E1350468/1-20   100.0%  40.0%    RELRNVKGISDQKAEKIMKE   
129 P72588_1/1-20   100.0%  35.0%    EQLLGLERFAQKSAEKLIAA   
130 O00847/1-20     100.0%  30.0%    KSILAVKGISEAKAEKIMAE   
131 DNLJ_HELPY/1-20 100.0%  15.0%    KDALNIQGLGDKVIEQLFEE   
132 O84148_1/1-20   100.0%  20.0%    EDLKQVPGFKDRSIQNLLAS   
133 DNLJ_HELPY_1/1- 100.0%  20.0%    EDLMRLDKFKIKKAQNLLDA   
134 DNLJ_HAEIN_2/1- 100.0%  25.0%    TTLTRLERMGAKSAENALNS   
135 O26650_1/1-20   100.0%  45.0%    GRLQELPGIGRNIAGKIEEI   
136 YBAV_ECOLI_1/1- 100.0%  30.0%    ELARAMNGVGLKKAQAIVSY   
137 P94544/1-20     100.0%  35.0%    DDMMSLSGIGKGTYSVIKEY   
138 B71662_1/1-20   100.0%  20.0%    SSLDEIDGIGETRKTALLHY   
139 DNLJ_ECOLI_2/1- 100.0%  10.0%    RRAMDVDGMGDKIIDQLVEK   
140 S62328_1/1-20   100.0%  30.0%    EDLERVEGITGKQMESFLKA   
141 RUVA_MYCTU_1/1- 100.0%  30.0%    LTLLSVSGVGPRLAMAALAV   
142 48865_1/1-20    100.0%  30.0%    SALADVSGIGNALAARIKAD   
143 P94544_1/1-20   100.0%  30.0%    VPLLKLPGLGGKKIAKLYKE   
144 Q55769_1/1-20   100.0%  40.0%    EDLGRVKGIGPSKIEGLRGK   
145 YBAV_HAEIN/1-20 100.0%  40.0%    EQLLEVQGIGKATLEKNRDR   
146 DNLJ_HAEIN_3/1- 100.0%  15.0%    IFALGIREVGEATALNLANH   
147 DNLJ_HELPY_2/1- 100.0%  20.0%    AEFLEMEGFGVEMARSLVNF   
148 YHGF_HAEIN/1-20 100.0%  20.0%    PLLARVAGMTKTLAQNIVEY   
149 YHGF_NEIME/1-20 100.0%  25.0%    KKLLKVPRLGEKTFEQAAGF   
150 UVRC_SYNY3_1/1- 100.0%  25.0%    SRLDEIPGLGFSRQKQLLAH   
151 O65562/1-20     100.0%  15.0%    KDLSQIKGFGKWMVKLMKGY   
152 O31498_1/1-20   100.0%  30.0%    ERVIQLERMGEKSTENLISS   
153 O26901_1/1-20   100.0%  35.0%    PLVVGVRGLGRVRARKIIKT   
154 F64239_1/1-20   100.0%  20.0%    SALCGINGVNNKIARALLSL   
155 O66880_2/1-20   100.0%  15.0%    RDAMDIRGLGDATIKLLFNR   
156 P94544_2/1-20   100.0%  30.0%    QKVQGLAGFGKKSEEKILQA   
157 P91153/1-20     100.0%  35.0%    VDLKNVQGIGENIALKLEET   
158 O27790/1-20     100.0%  40.0%    PILTEVGGIGERLARKIIDE   
159 UVRC_MYCTU_1/1- 100.0%  25.0%    SALDSVPGLGEHRRKALVTH   
160 P72588_2/1-20   100.0%  10.0%    RNALDIQGLGEKVVITLLEN   
161 O84148_2/1-20   100.0%  10.0%    KSALNIDHLGEKVVTKLFEV   
162 O27790_1/1-20   100.0%  25.0%    DRLVAIEGISQRRAIEIANK   
163 DNLJ_MYCPN_1/1- 100.0%  15.0%    KTAMDIQGLSIQTISKLYEN   
164 RADA_HALVO_1/1- 100.0%  45.0%    GELSNKADIGSSTASDIINA   
165 RADA_METTH_1/1- 100.0%  40.0%    KELSVKAEIGEGVAEKVIEA   
166 D1035526_1/1-20 100.0%  25.0%    NKLLTVNGIGAKASLSLLSI   
167 O65562_1/1-20   100.0%  15.0%    IQLMQVPQVTEEIAIAVLDM   
168 H71695_1/1-20   100.0%  25.0%    NIFKAISGVGAKLAERIMLE   
169 O26650_2/1-20   100.0%  20.0%    HRIRRLRGMGEKREAMILRN   
170 P91153_1/1-20   100.0%  30.0%    RQLMVCPGMSQNRAEAIADR   
171 DPO1_THEAQ_1/1- 100.0%  30.0%    ALLKNLDRLKPAIREKILAH   
172 H64487_1/1-18    90.0%  38.9%    --VESLPDVGGALAERLLKH   
173 DNLJ_TREPA_1/1- 100.0%  10.0%    IECLEIKHVGTELIQRLFEE   
174 DPO1_BACSU_1/1- 100.0%  15.0%    VDVDRLKRMGEELGAKLKEY   
175 O86259_1/1-20   100.0%  10.0%    GFVMTITTVGIDLAKNVFAV   
176 O27466_1/1-18    90.0%  44.4%    --VESLPNIGSKYAERLLEA   
177 P71728_1/1-20   100.0%  30.0%    DQLADVDGIGPARLDKRRNL   
178 P95945_1/1-20   100.0%  15.0%    ESALKISGLYRTKAKRLKEI   
179 O51502_1/1-20   100.0%  15.0%    YKLLEFKGFKDRKINNLINS   
    consensus/100%                   ..h..h..h...........   
    consensus/90%                    ..h.tl.thu...h..lh..   
    consensus/80%                    ttl.tl.GlG.thsttlht.   
    consensus/70%                    ppLhpl.GlG.phAptlhth