cov pid 1 [ . . . . : . . . 80 1 gi|2495057|sp|Q 100.0% 100.0% EGLYCNRTWDGWM-CWDDTPAGATAYQHCPDYFPDFDTAEK------------------------VSKYCDEN----GEW 2 gi|2495058|sp|Q 100.0% 65.8% EGVYCNRTWDGWL-CWNDVAAGTESMQLCPDYFQDFDPSEK------------------------VTKICDQD----GNW 3 gi|1169899|sp|P 90.8% 28.2% SGMVCNGSFDMYV-CWDYTAANTTAQASCPWYLPWYRHVAAG----------------------YVFRQCGSD----GQW 4 gi|2495064|sp|Q 98.7% 35.9% TELVCNRTFDNYS-CWPDTPPNTTANISCPWYLPWCHKVQHR----------------------LVFKRCGPD----GQW 5 gi|542829|pir|| 100.0% 26.9% TDLFCNRTFDEYA-CWPDGEPGSFVNVSCPWYLPWASSVPQG----------------------HVYRFCTAE----GLW 6 gi|495196/1-97 92.1% 22.1% NHRACSGVWDNIT-CWRPADIGETVTVPCPKVFSNFYSRPGN-----------------------ISKNCTSD-----GW 7 gi|542976|pir|| 92.1% 17.0% SSPGCPGMWDNIT-CWKPAHVGEMVLVSCPELFRIFNPDQVWETETIGESDFGDSNSLDLSDMGVVSRNCTED-----GW 8 gi|4138863/1-93 89.5% 25.6% DTAVCKRTWDNIT-CWPSASIGEVVVLQCPGYFSMFTTG---------------------TVNGNVSKNCTSE-----GW 9 gi|2495069|sp|Q 81.6% 20.8% VTSGCKGMWDIIA-CWPSAKVGEHVVIPCPNYFRHFSD----------------------HHEGNLSKTCTAD-----GW 10 gi|2495068|sp|Q 88.2% 22.0% ETSGCSKMWDNLT-CWPATPRGQVVVLACPLIFKLFSP----------------------TQGLNVSRNCTDE-----GW 11 gi|1172742|sp|P 100.0% 34.2% QDGFCLPEWDNIV-CWPAGVPGKVVAVPCPDYIYDFNHKGR------------------------AYRRCDSN----GSW 12 gi|2495067|sp|P 100.0% 32.9% GEGNCFPEWDGLI-CWPRGTAGKTSAMPCPSYVYDFNHKGV------------------------AFRHCTPN----GTW 13 gi|3023563|sp|O 90.8% 26.6% TGLACNASIDMIGTCWPSTAAGQMVARPCPEYFHGVQYNTTGN----------------------VYRECHLN----GSW 14 gi|2495062|sp|Q 90.8% 25.3% TGPQCNASVDLIGTCWPRSAVGQLVARPCPEYFYGVRYNTTNN----------------------GYRECLAN----GSW 15 gi|2137748|pir| 90.8% 27.8% PYTYCNTTLDQIGTCWPQSAPGALVERPCPEYFNGIKYNTTRN----------------------AYRECLEN----GTW 16 gi|544161|sp|P3 89.5% 24.4% SDNYCPAYFDGLL-CWDPTPWNTLAVQKCFKELYGIQYDDTQN----------------------ASRLCLDG-----VW 17 gi|2495063|sp|Q 90.8% 29.5% APLRCAIAWDGVN-CWPETPAGALAVQPCFDELNGIRYDIRQN----------------------ATRMCYSN----GTW 18 gi|3695123/1-12 85.5% 15.6% PERFCEALEMKGI-KWPQTQRGMMVERPCPKGTRGT-----------------------------ASYLCMAST---GTW 19 gi|2239297/1-12 85.5% 15.6% PELFCEPREVRRV-QWPATQQGMLVERPCPKGTRGI-----------------------------ASFQCLPAL---GLW 20 gi|4164075/1-11 85.5% 15.6% LEESCEAVEAREI-MWFKTRQGQMAKQPCPAGTIGV-----------------------------STYLCLAPD---GIW 21 gi|3800736/1-11 81.6% 15.6% IYNGCPRAFEAGI-WWPQTKFGQPAAVPCPKGSVGN-----------------------------AVRHCSGEK----GW 22 gi|1665821|gnl| 81.6% 20.8% NYDSCPRAIEAGI-WWPRTRFGLPAAAPCPKGSFGT-----------------------------AVRHCDEHR----GW 23 gi|3449288|gnl| 88.2% 16.9% LYDACPKSLRSGV-WWPQTKFGVLATVPCPRGALGLRGTGA------------------------AVRLCDEDH----GW 24 gi|3021701|gnl| 82.9% 20.0% PYEICPEDYLMSM-VWKRTPAGDLAFNQCPLNATGT-----------------------------TSRRCSLSLHGVAFW 25 gi|3021699|gnl| 82.9% 16.2% FHEMCRDEYVMLM-TWKKAAAGEIIYNKCPPNASGS-----------------------------ASRRCLLSAQGVAYW 26 gi|2653432|gnl| 82.9% 18.8% PHEICDEDNFGAV-IWKETPAGEVAAVRCPRNATGL-----------------------------ILRRCELDEEGIAYW 27 gi|3098569/1-91 92.1% 20.3% GKFECPWEWDNLT-CWEATSVGKVVEVNCPELFDFMSPEEGP---------------------GKISRNCTEF-----GW 28 gi|384010|prf|| 92.1% 23.4% TSLGCPGTWDGLT-CWPPTGSGQWVSLPCPEFFSEFGSDTGF-----------------------VKRDCTIT-----GW 29 gi|134324|sp|P2 92.1% 14.3% TASGCEGLWDNMS-CWPSSAPARTVEVQCPKFLLMLSNKNGS-----------------------LFRNCTQD-----GW 30 gi|3875964|gnl| 82.9% 15.8% VSGKCPSEIEYSI-QWPASQKGSIVRQSCPVGESGL-----------------------------ATRKCLET----GRW 31 gi|3098567/1-96 92.1% 19.5% QQTGCWTDWDGIR-CWQTAKTGQLINVSCSDVFQHISNTQG-----------------------FIYRNCSSN-----GW 32 gi|2495071|sp|Q 97.4% 27.2% TRIWCNATYDTVL-CWPPTPANSSVTLQCPHMKGLDPNK-------------------------YIVKRCDET----GRW 33 gi|1053218/1-11 84.2% 17.9% KPRYCKKEKKDGI-TYEQTRACMLHEQPCPDPQNVEG---------------------------TVTRYCNCQT---AKW 34 gi|732236|sp|P3 94.7% 23.5% DDSPCPPTWDGWN-CFDSATPG-VVFKQCPNYIYGGSNIKTDYDR-------------------LSQKVCRSN-----GW 35 gi|3873813|gnl| 85.5% 19.7% EDVFCSATNRRGV-NWQNTKSGTTSSAPCPEGSSGK-----------------------------QLWACTEE----GQW consensus/100% ....C..........a..s..s......C......................................h.C.........W consensus/90% ....C......h..hW..s..s..s...CP...................................h.h.C..t......W consensus/80% .t.hC.t.hcthh.pW.ts..Gths...CPthh.hh.............................h.+.C..p.....tW consensus/70% .t.hC.tth-thh.sWststhGphs.hsCPphh.th.............................s.+tCtts.....tW cov pid 81 . 1 ] 109 1 gi|2495057|sp|Q 100.0% 100.0% FRHPD----SNRTWSNYTLCNAFTSEKLQ 2 gi|2495058|sp|Q 100.0% 65.8% FRHPA----SNRTWTNYTQCNVNTHEKVK 3 gi|1169899|sp|P 90.8% 28.2% G-----------PWRDHTQCENPEKNGAF 4 gi|2495064|sp|Q 98.7% 35.9% VRGPR-----GQPWRNASQCQLDDEEIEV 5 gi|542829|pir|| 100.0% 26.9% LQKDN----SSLPWRDLSECEESKRGERS 6 gi|495196/1-97 92.1% 22.1% SETFP---------DFIDACGYNDPEDES 7 gi|542976|pir|| 92.1% 17.0% SEPFP---------HYFDACGFDEYESET 8 gi|4138863/1-93 89.5% 25.6% SEMYPA--------TYAAACGFSTNDTPT 9 gi|2495069|sp|Q 81.6% 20.8% TEMDPM--------EIAVYCGYNL----- 10 gi|2495068|sp|Q 88.2% 22.0% TPLEPG--------PYPIACGMDDKASGL 11 gi|1172742|sp|P 100.0% 34.2% ELVPG----NNRTWANYSECVKFLTNETR 12 gi|2495067|sp|P 100.0% 32.9% DFIHG----SNKTWANYSDCFLQPDINIG 13 gi|3023563|sp|O 90.8% 26.6% AG-----------RGDYAQCQEILKQEKK 14 gi|2495062|sp|Q 90.8% 25.3% AA-----------RVNYSQCQEILSEEKR 15 gi|2137748|pir| 90.8% 27.8% AS-----------RVNYSHCEPILDDKQR 16 gi|544161|sp|P3 89.5% 24.4% HN-----------YTNYTNCTERIANGSP 17 gi|2495063|sp|Q 90.8% 29.5% RN-----------YSDYVHCRELVEAESD 18 gi|3695123/1-12 85.5% 15.6% NPKG----------PDLSNCTSHWVNQLA 19 gi|2239297/1-12 85.5% 15.6% NPRG----------PDLSNCTSPWVNQVA 20 gi|4164075/1-11 85.5% 15.6% DPQG----------PDLSNCSSPWVNHIT 21 gi|3800736/1-11 81.6% 15.6% LP------------PELFNCTSGSFVDLK 22 gi|1665821|gnl| 81.6% 20.8% LP------------PNLFNCTSITFSELK 23 gi|3449288|gnl| 88.2% 16.9% LE------------PDFFNCTSPAFRELS 24 gi|3021701|gnl| 82.9% 20.0% EQ------------PSFARCISNEYRHLQ 25 gi|3021699|gnl| 82.9% 16.2% GL------------PSFARCISHEYRYLY 26 gi|2653432|gnl| 82.9% 18.8% EP------------PTYIRCVSIDYRNIQ 27 gi|3098569/1-91 92.1% 20.3% SESYP---------HYVDACMIGENTTKP 28 gi|384010|prf|| 92.1% 23.4% SNPFP---------PYPVACPVPLELLTK 29 gi|134324|sp|P2 92.1% 14.3% SETFP---------RPDLACGVNINNSFN 30 gi|3875964|gnl| 82.9% 15.8% SD------------VNAWNCTRPEYSIMV 31 gi|3098567/1-96 92.1% 19.5% SDPYP---------SYEEACTFEDDSESG 32 gi|2495071|sp|Q 97.4% 27.2% AGKKPGHYENPWGWTNFTVCFKIDYEDAK 33 gi|1053218/1-11 84.2% 17.9% ET------------PDTTNCTHRWVAEME 34 gi|732236|sp|P3 94.7% 23.5% ATPEVNAAA--REHTDYTGCMSNGDVEAR 35 gi|3873813|gnl| 85.5% 19.7% LTEF----------PNSAGCESNWISSRN consensus/100% ...................C......... consensus/90% ..................tC......... consensus/80% ..............s.h.tC.....tp.. consensus/70% t.............sshstCt....ppht