cov pid 1 [ . . . . : . . . 80 1 O95376/208-270 100.0% 100.0% EKY-RRYLFRDYVESH--YQLQLCPG-ADC-PMVIRVQ------------------------------------------ 2 O01965/165-226 98.4% 38.1% ATY-RKLIVASYVETN--RLLKWCPG-IDC-GKAVRVS------------------------------------------ 3 Q9UP39/256-317 98.4% 38.1% LKY-QHLITNSFVECN--RLLKWCPA-PDC-HHVVKVQ------------------------------------------ 4 O76924/222-284 100.0% 46.0% DKY-QQFAFKDYVKSH--PELRFCPG-PNC-QIIVQSS------------------------------------------ 5 Q9VT94/208-269 98.4% 28.6% ERY-QQLITNTFVECN--MLMRWCPA-PNC-SHAVKAV------------------------------------------ 6 Q9SKC3/197-260 98.4% 35.4% EKY-SRYILRSYVEDG--KKIKWCPS-PGC-GYAVEFGGS---------------------------------------- 7 O01964/197-258 98.4% 38.1% AKY-RKMMVASYIEIN--ALLKWCPG-VDC-GRTVKVS------------------------------------------ 8 P90662/203-268 100.0% 24.2% TKY-EDFMVRRVLLAD--PDSRWCPG-PDC-SYAVVASG----------------------------------------- 9 Q94981/203-264 98.4% 36.5% VKY-QQLITNSFVECN--QLLRWCPS-VDC-TYAVKVP------------------------------------------ 10 O01963/192-253 98.4% 39.7% SKY-RKLMVASYVEIN--CLLRWCPG-IDC-GKAVKVS------------------------------------------ 11 Q9QUJ5/199-264 100.0% 24.2% EKY-EEFMLRRWLVAD--PDCRWCPA-PDC-GYAVIAFG----------------------------------------- 12 Q22431/198-260 100.0% 49.2% LKY-ERFLLRDMVNSH--PHLKFCVG-NEC-PVIIRST------------------------------------------ 13 Q9MA37/201-263 98.4% 35.9% EKY-YRYFLRSYVEVN--REMKWCPA-PGC-EHAIDFAG----------------------------------------- 14 Q9SKC4/190-251 98.4% 34.9% DKY-YRYFLRSYVEDG--KKMKWCPS-PGC-ECAVEFG------------------------------------------ 15 P91067/161-226 100.0% 25.8% EKY-EAFSLRRYLMTE--ADARWCPA-PDC-GFVFIATK----------------------------------------- 16 O80814/205-267 98.4% 32.8% QKY-TSYFVRSYVEDN--RKTKWCPA-PGC-DYAVNFVV----------------------------------------- 17 Q9NUH2/186-251 100.0% 25.8% HKY-EEFMLRRYLASD--PDCRWCPA-PDC-GYAVIAYG----------------------------------------- 18 Q9SKC2/208-271 98.4% 32.3% DKY-YRYFLRSYVEDG--KKMKWCPS-PGC-EYAVEFG------------------------------------------ 19 Q20871/253-315 100.0% 25.4% AKY-EAHMLEKAIREM--DDSMECPN-ENC-QMVAYLT------------------------------------------ 20 O97226/261-322 98.4% 33.3% EKY-LYTLLHIYIKKS--KDLKKCPN-KPC-PYIIQSV------------------------------------------ 21 Q9SKL2/158-224 98.4% 19.1% EMW-KQKMKEDSIPA---AERIYCPY-PNC-SMLMSKTELSS-------------------------------------- 22 Q9SZ02/194-256 98.4% 32.8% AKF-DRYLLESYIEDN--RMVKWCPSTPHC-GNAIRAE------------------------------------------ 23 Y161_HUMA/91-1 100.0% 25.8% QRY-KKLQFEREVLFD--PCRTWCPA-STC-QAVCQLQDVG--------------------------------------- 24 Q9FHR4/262-328 98.4% 22.1% EMW-KRKMEEDLIPD---AEKIYCPY-RSC-SMLMSKTELS--------------------------------------- 25 Q9NA31/191-252 98.4% 36.5% AAY-RKLIISSYVETN--SQLKWCPG-AGC-GKAVKGE------------------------------------------ 26 O80984/227-292 98.4% 19.4% KMW-EQKTKDELIPVM---DRVYCPN-PRC-STLMSETELSG-------------------------------------- 27 O94793/4-65 98.4% 30.2% ARY-DRLLLQSSLDLM--ADVVYCPR--PC-CQLPVMQ------------------------------------------ 28 Q9VP72/320-380 95.2% 35.9% DRY-QRFATEEYVLQ---AGGVLCPQ-PGC-GMGLLVE------------------------------------------ 29 Q9V5P3/44-150 100.0% 16.8% KKH-HRYRLNREIELD--KTRTWCPR-AGC-ETICTVGAAAQPGQSSVICQMDESPSTSQ-------------------- 30 Q9LZH2/223-291 98.4% 18.6% AIW-KQRIEEELILV---AERVYCPN-PRC-SGLMSKTELSTS------------------------------------- 31 Q9JI90/290-351 98.4% 30.2% ARY-DRLLLQSTLDLM--ADVVYCPR--PC-CQLPVMQ------------------------------------------ 32 Q9SJT6/254-320 98.4% 23.5% EFW-KRKIEEDLVPA---ADKIYCPY-RRC-SMLMSKTALS--------------------------------------- 33 O75188/1376-14 92.1% 29.0% SKY-EKALLRGYVESC--SNLTWCTNPQGC-DRILCRQGLGC-------------------------------------- 34 Q9LVX0/190-254 98.4% 31.8% DRY-DRFLIESYVEDN--NMVKWCPSKPHC-GSAIRKI------------------------------------------ 35 13548331/148-2 98.4% 27.9% EMY-ENYILESFMECHK-ATIKWCPA-SGC-EYAVELQEDGN-------------------------------------- 36 Q9M1F0/231-298 98.4% 17.4% AMW-ELRIEEESIPV---AERVYCPN-PLC-SSLMSVTKLSN-------------------------------------- 37 O81849/271-348 100.0% 15.4% TTF-KSFEEANVCSKN--NGKIYCPY-PNC-SFLLDPQECLSSGRAS--------------------------------- 38 YMG8_YEAS/272- 95.2% 22.9% ERY-EKMFYNQAATR----LSKYCPY--AC-VTCRRCDSWCT-------------------------------------- 39 Q9M1E9/241-308 98.4% 17.4% AMW-ELRIEEESIPV---EERVYCPN-PRC-SSLMSVTKLSN-------------------------------------- 40 Q9M1G0/73-138 98.4% 14.9% ELW-KHMMKEESIPL---AKRIYCPY-INC-STLMSKTEIS--------------------------------------- 41 Q9N4U3/110-176 100.0% 29.9% SKY-ESFSIRMALCRI--QDVRWCPA-PDC-GFAVIVPN----------------------------------------- 42 Q9JM64/313-377 95.2% 26.5% NRY-QQYGAEECVLQM---GGVLCPR-PGC-GAGLLPE------------------------------------------ 43 Q9US46/246-308 96.8% 21.5% NRY-KELEEKRRYEND--SNIIFCPR-SFCQGPSKRD------------------------------------------- 44 O60260/313-377 95.2% 26.5% NRY-QQYGAEECVLQM---GGVLCPR-PGC-GAGLLPE------------------------------------------ 45 Q9M1F3/168-235 98.4% 20.3% EMW-QQRIKEDLIPV---TGRIYCPN-SRC-SALMSETELSI-------------------------------------- 46 Q9SV27/1628-16 98.4% 25.4% DEL-ISASLSAFVTSSD-GKLRFCST-PDC-PSIYRVAG----------------------------------------- 47 Q9P3U4/197-264 98.4% 31.9% DRY-HRLLDRSFVDDN--DHLRWCPA-PDC-EFAIECHV----------------------------------------- 48 Q9LSS2/368-441 98.4% 16.0% KLW-QQRLQENAIPV---TERVYCPY-PRC-SALMSKTKISESAK----------------------------------- 49 Q9FFP1/158-227 98.4% 31.0% EMY-ERYIWRSYIEGNKVLMIKQCPA-RNC-DYVIEFHQE---------------------------------------- 50 Q9FFN9/158-230 98.4% 29.7% EMY-VEYILRSYIEGNKVLEIKYCPA-QDC-NYVIEFHQKNH-------------------------------------- 51 Q9M1F9/224-291 98.4% 18.8% EMW-EKRIKEESIPV---CDRFHCPN-PRC-WALMSKTELT--------------------------------------- 52 13561001/90-15 100.0% 30.3% QLY-QRLKFEREVHLD--PYRTWCPV-ADC-QTVCPVASS---------------------------------------- 53 Q9M1F6/134-200 98.4% 17.6% EMW-EQRIKEESIPV---CNRFHCPN-PKC-WALMSKTELT--------------------------------------- 54 Q9HBZ6/195-328 100.0% 30.6% EKY-RRYLFRDYVESH--YQLQLCPG-ADC-PMVIRVQEPRARRVQCNRCNEVFWFQVSSDVSRTHRLCHNPEMAHEVSK 55 Q9LUM2/164-228 98.4% 21.2% DRW-EKILCESLISS---WDKFYCPF-KDC-SAMMVNNENG--------------------------------------- 56 Q9LVW9/161-225 98.4% 24.2% DCW-KEHFTVRINEDN--NMVKWCPSTPHC-GNAIRNI------------------------------------------ 57 Q9FFN8/106-174 98.4% 28.6% AMY-ELYILKSYREKYLGWKLKLCPA-RGC-NYVIEFHLAS--------------------------------------- 58 CAC28847/315-3 100.0% 23.5% KRY-VTLKYKTELESD--KNTIYCPR-QWCNGAARGVSK----------------------------------------- 59 Q9LFF2/183-246 98.4% 20.0% DRW-GDALCEAVVMR---SKKFYCPY-KDC-SALVFLEES---------------------------------------- 60 Q9NE54/216-281 100.0% 28.8% EQI-HRKYLTSFVETC--PTLHWCPNPQGC-AAVIYAP------------------------------------------ 61 Q9NA71/882-946 100.0% 20.0% RRL-TDRAKQLLIQTN--EDLAACPS-ADC-VGILSKSD----------------------------------------- 62 Q9LQM5/446-504 93.7% 20.6% ERW-ETLMLQKTLESM--TDVAYCP---RC-ETPCIED------------------------------------------ 63 CAC36346/36-10 93.7% 23.3% IKY-KYFLELGRIDS----STKPCP---QC-KHFTTFKKKG--------------------------------------- 64 Q9VM88/2106-21 95.2% 22.7% ELF-QRKLRDRSLLQD--PNFKWCI---QC-SSGFFAR------------------------------------------ 65 Q9HFI3/651-712 98.4% 19.0% RRY-DELATRAALGNI--PNFRWCKS-SKC-NSGQIDD------------------------------------------ 66 ENSP00000/224- 95.2% 15.9% ALF-HKKLTEGVLMRD--PKFLWCA---QC-SFGFIYE------------------------------------------ 67 O01964/270-330 92.1% 20.0% KKCNDDSETSNWINS----NTKECP---KC--MATIEK------------------------------------------ 68 Q9P3U4/276-334 92.1% 17.6% QKCQDDSETANWIHA----NTKECP---KC-STTIEKN------------------------------------------ 69 Q9FHR4/337-397 92.1% 18.2% ERL-VNDMMLKVLAND--QMWRQCS---EC-KHMIELT------------------------------------------ 70 Q20871/354-417 92.1% 21.9% KALEERFLNRGWLEE----NSKQCP---KC--LVYIEK------------------------------------------ 71 O01963/257-324 92.1% 18.8% KKCQDDSETMNWINA----NTKDCP---KC--MIPIEK------------------------------------------ 72 O01965/238-298 92.1% 17.1% KKCNDDSETSNWINA----NTKECP---KC--MITIEK------------------------------------------ consensus/100% ..h....................C.....C.................................................. consensus/90% thh..ph..tt.l.......hh.CP...tC...hh............................................. consensus/80% tha.pphhhpphl......thhhCP...tC.thhh..t.......................................... consensus/70% ppa.pphhhpphl.s....phhaCPt..pC.shhh.hp.......................................... cov pid 81 . 1 . . . . ] 150 1 O95376/208-270 100.0% 100.0% -------------------------EPRARRVQCN-----RCNEVFCFKCRQ-MY-------HAPT--DC 2 O01965/165-226 98.4% 38.1% -------------------------HWEPRLVVC------SCGSRFCFSCGH-DW-------HEPV--NC 3 Q9UP39/256-317 98.4% 38.1% -------------------------YPDAKPVRC------KCGRQFCFNCGE-NW-------HDPV--KC 4 O76924/222-284 100.0% 46.0% -------------------------EISAKRAICK-----ACHTGFCFRCGM-DY-------HAPT--DC 5 Q9VT94/208-269 98.4% 28.6% -------------------------CAEPRAVLC------KCGHEFCFACGE-NW-------HEPA--SC 6 Q9SKC3/197-260 98.4% 35.4% -------------------------ESSSYDVSC------LCSYRFCWNCSE-DA-------HSPV--DC 7 O01964/197-258 98.4% 38.1% -------------------------HGEPRLVVC------TCGSRFCFSCGQ-DW-------HEPV--NC 8 P90662/203-268 100.0% 24.2% -------------------------CASCPRIRCERP---GCDVQFCYHCKA-EW-------HPDQ--TC 9 Q94981/203-264 98.4% 36.5% -------------------------YAEPRRVHC------KCGHVFCFACGE-NW-------HDPV--KC 10 O01963/192-253 98.4% 39.7% -------------------------HWEPRLVVC------SCGTCFCFSCGQ-NW-------HEPL--NC 11 Q9QUJ5/199-264 100.0% 24.2% -------------------------CASCPKLTCGRE---GCGTEFCYHCKQ-IW-------HPNQ--TC 12 Q22431/198-260 100.0% 49.2% -------------------------EVKPKRVTCM-----QCHTSFCVKCGA-DY-------HAPT--SC 13 Q9MA37/201-263 98.4% 35.9% -------------------------GTESYDVSC------LCSHSFCWNCTE-EA-------HRPV--DC 14 Q9SKC4/190-251 98.4% 34.9% -------------------------ESSGYDVAC------LCSYRFCWNCSE-DA-------HSPV--DC 15 P91067/161-226 100.0% 25.8% -------------------------CAACPQLKCQRP---DCGTLFCYHCKR-EW-------HSNQ--TC 16 O80814/205-267 98.4% 32.8% -------------------------GSGNYDVNC------RCCYSFCWNCAE-EA-------HRPV--DC 17 Q9NUH2/186-251 100.0% 25.8% -------------------------CASCPKLTCERE---GCQTEFCYHCKQ-IW-------HPNQ--TC 18 Q9SKC2/208-271 98.4% 32.3% -----------------------VNGSSSYDVSC------LCSYKFCWNCCE-DA-------HSPV--DC 19 Q20871/253-315 100.0% 25.4% -------------------------DSQRNLVECS-----YCNYSFCNLCKG-TF-------HGVS--RC 20 O97226/261-322 98.4% 33.3% -------------------------MLNNNNVIC------KCGYHFCFECLH-EF-------HRPL--LC 21 Q9SKL2/158-224 98.4% 19.1% ------------------------ESDLSNDRSCV-----KCCGLFCIDCKV-PS-------HSDL--SC 22 Q9SZ02/194-256 98.4% 32.8% -------------------------DDKLCEVEC------SCGLQFCFSCLC-QA-------HSPC--SC 23 Y161_HUMA/91-1 100.0% 25.8% -------------------------LQTPQPVQCK-----ACRMEFCSTCKA-SW-------HPGQ--GC 24 Q9FHR4/262-328 98.4% 22.1% -----------------------REAEQSNVRACI-----KCSELFCIDCKV-PW-------HSDL--SC 25 Q9NA31/191-252 98.4% 36.5% -------------------------PSDREPAVC------TCGERFCFACAQ-DW-------HDPL--SC 26 O80984/227-292 98.4% 19.4% -------------------------LNIGVRRCCV-----KCGEPFCVKCKV-SW-------HNNL--SC 27 O94793/4-65 98.4% 30.2% -------------------------EPGCTMGICS-----SCNFAFCTLCRL-TY-------HGVS--PC 28 Q9VP72/320-380 95.2% 35.9% --------------------------PDCRKVTCQN----GCGYVFCRNCLQ-GY-------HIG---EC 29 Q9V5P3/44-150 100.0% 16.8% ---SYSPQQEVAGNGSTGAAAGNGAPVLSVSVHCP-----SCKDEFCGLCKK-AY-------HPNI--SC 30 Q9LZH2/223-291 98.4% 18.6% -----------------------TEEDVSTRTCCV-----KCGEPFCINCKV-PW-------HSNL--SC 31 Q9JI90/290-351 98.4% 30.2% -------------------------EPGGTMAICS-----SCNFAFCTLCRL-TY-------HGLS--PC 32 Q9SJT6/254-320 98.4% 23.5% -----------------------RETDQSNVRACI-----KCCRLFCIDCKV-PS-------HAGL--SC 33 O75188/1376-14 92.1% 29.0% ------------------------------GTTCS-----KCGWASCFNCSFPEA-------HYPA--SC 34 Q9LVX0/190-254 98.4% 31.8% -----------------------EDGHDVVEVGC------SCGLQFCFSCLS-ES-------HSPC--SC 35 13548331/148-2 98.4% 27.9% -------------------------EDNVISVVC------LCGHTFCWTCGL-ES-------HRPV--SC 36 Q9M1F0/231-298 98.4% 17.4% -----------------------STREDVTMRTCV-----KCGEPFCINCKL-PW-------HSNL--SC 37 O81849/271-348 100.0% 15.4% -------------------SSSSTQSENSCCVECP-----VCERFVCVDCGV-PW-------HASM--SC 38 YMG8_YEAS/272- 95.2% 22.9% -----------------------KEDLDDAMIQCQ-----KCHFVFCFDCLH-AW-------HGYN-NKC 39 Q9M1E9/241-308 98.4% 17.4% -----------------------STREDVTMRSCV-----KCGEPFCINCKL-PW-------HSNL--SC 40 Q9M1G0/73-138 98.4% 14.9% ------------------------RSNKSNDRACI-----KCSGLVCIDCKV-PW-------HSDL--SC 41 Q9N4U3/110-176 100.0% 29.9% -------------------------GQKCPRIKCQRP---GCGREFCFKCRK-VW-------HEGT-RTC 42 Q9JM64/313-377 95.2% 26.5% --------------------------QGQRKVTCEGGNGLGCGFVFCRDCKE-AY-------HEG---EC 43 Q9US46/246-308 96.8% 21.5% --------------------------PGQKLAICQ-----KCDFAFCSFCQA-TW-------HGDL-SPC 44 O60260/313-377 95.2% 26.5% --------------------------PDQRKVTCEGGNGLGCGFAFCRECKE-AY-------HEG---EC 45 Q9M1F3/168-235 98.4% 20.3% -----------------------STKEDEVRRCCF-----KCGQIFCIKCKV-SW-------HSNL--SC 46 Q9SV27/1628-16 98.4% 25.4% -----------------------PQESGE-PFICG-----ACHSETCTRCHL-EY-------HPLI--TC 47 Q9P3U4/197-264 98.4% 31.9% --------------------TQASLSSVVPTVTC------NCGKQFCFGCGH-DN-------HQPT--IC 48 Q9LSS2/368-441 98.4% 16.0% --------------------SLLSLYPKSGVRRCV-----ECRGLFCVDCKV-PW-------HGNL--SC 49 Q9FFP1/158-227 98.4% 31.0% ---------------------NDDDDEYSLNVVC------ICGHIFCWRCRL-ES-------HRPV--SC 50 Q9FFN9/158-230 98.4% 29.7% --------------------DGADQEDYGFNVVC------LCGHIFCWRCML-ES-------HKPV--TC 51 Q9M1F9/224-291 98.4% 18.8% ----------------------ESTEEDGVRRCCY-----KCRKHFCINCKV-PW-------HSNL--SC 52 13561001/90-15 100.0% 30.3% ------------------------DPGQPVLVECP-----SCHLKFCSCCKD-AW-------HAEV--SC 53 Q9M1F6/134-200 98.4% 17.6% -----------------------ESTDDGVRRCCS-----KCRKPFCIDCNV-SW-------HSNL--SC 54 Q9HBZ6/195-328 100.0% 30.6% TTLKQPTTLVLTLKTVPSATSAFEKDGGCNHMQCS-----KCKHDFCWMCLG-DWK-T----HGSEYYEC 55 Q9LUM2/164-228 98.4% 21.2% -------------------------DANVTQTECR-----SCHRLFCVQCKV-TW-------HAGI--GC 56 Q9LVW9/161-225 98.4% 24.2% -----------------------KDDGDVDEVEC------SCGLQFCFSCLS-ES-------HSPC--SC 57 Q9FFN8/106-174 98.4% 28.6% -----------------------EDEEHSLNIVC------LCGHIFCWRCML-ES-------HRPV--TC 58 CAC28847/315-3 100.0% 23.5% -----------------------PYNATDLLAICE-----DCNFAFCSRCHQ-SW-------HGEF-VRC 59 Q9LFF2/183-246 98.4% 20.0% -------------------------EVKMKDSECP-----HCHRMVCVECGT-QW-------HPEM--TC 60 Q9NE54/216-281 100.0% 28.8% -----------------------VPPLQGQGVRCL-----LCNRSYCLRCSY-EP-------HRPA--TC 61 Q9NA71/882-946 100.0% 20.0% ------------------------DGLISEFKKCE-----ACDRSYCRKCLA-EP-------HPDD--TC 62 Q9LQM5/446-504 93.7% 20.6% ---------------------------EEQLALCF-----KCYFSFCTLCKE-KR-------HVGV--AC 63 CAC36346/36-10 93.7% 23.3% ------------------HIPTPSRSESKYKIQCP-----TCQFVWCFKCHS-PW-------HEGV--NC 64 Q9VM88/2106-21 95.2% 22.7% --------------------------PKQKRLICP-----DCGSVTCAQCRK-PWERQ----HEGS--SC 65 Q9HFI3/651-712 98.4% 19.0% --------------------------VRCVRFKCK-----ACKNSHCIKHDV-PW-------HSGE--TC 66 ENSP00000/224- 95.2% 15.9% --------------------------REQLEATCP-----QCHQTFCVRCKR-QQ-------HRGR--SC 67 O01964/270-330 92.1% 20.0% -------------------------NGGCNQITCKNT---GCKFQFCWMCLG-PWTV-----HANAWYKC 68 Q9P3U4/276-334 92.1% 17.6% --------------------------GGCNHMTCK-----KCKYEFCWVCLG-PWTE-----HGNNWYTC 69 Q9FHR4/337-397 92.1% 18.2% --------------------------EGCNHITC------RCGYEFCYRCGH-KWTKY----HHY---SC 70 Q20871/354-417 92.1% 21.9% -------------------------DEGCNKMHCT-----KCNASFCWLCSK-TLNNVDPYSHYSEKGSC 71 O01963/257-324 92.1% 18.8% -------------------------NGGCNRMLCTNS---GCRYEFCWMCLE-PWTK-----HGYQ-YAC 72 O01965/238-298 92.1% 17.1% -------------------------DGGCNHMTCKNT---ACRFEFCWMCLG-PWEP-----HGSSWYSC consensus/100% .................................C.......C....C..p............H......C consensus/90% ...............................h.C.......Ct..aCh.C............H.....tC consensus/80% ...........................ts..h.C......tCt..FChtCt...h.......Hts...sC consensus/70% .........................t.ts.thtC......tCth.FChpCt..ta.......Htsh..sC