cov    pid  1 [        .         .         .         .         :         .         .       ] 78
 1 hyp360_Am1/1-60 100.0% 100.0%    SVPIFAY-------DYNGEFIG----SYDSIDKASKALNV-------ISKTISQNRDTG--NLVYN-----LYYFYST   
 2 hyp360_Am2/1-60 100.0%  43.4%    AELVFAY-------DIDGNLIG----KYSSGGEASKALGV-------STSSINKGKNTG--KLISN-----KFCFFST   
 3 Q0130_Sc/1-58    98.1%  22.2%    KTGVFIF-------DLNNNYIM----TVGGQAKTAKYFNV-------KTSEVVRHIRN--KTIFLN-----KYYLKPT   
 4 Q0255p_2/1-60    98.1%  22.2%    NVGVFVY-------DLNNTLIM----TFTGYRPAATYFNC-------SKHEIAKYIKN--GNVFMN-----KYILKNI   
 5 ORF1_WILSU       98.1%  24.6%    KGGMFMY-------DKNKTFIG----YISSIKNTEIYFLKLGYMHGAKRTSMSKYATN--NKLFLN-----NYYLYKS   
 6 Param_1/1-60     98.1%  20.0%    AKKVYQY-------DMDGKYIG----WFDSCEEAARHLEK------SDGSDISKCARG--KRKTAY-----KFRWSYE   
 7 PBCV128/1-59     98.1%  20.4%    AKCVYQF-------DMNGNFIQ----SFQTVAEAAEYLGK-------VHGGIASCARG--DRNSAY-----GFRWSST   
 8 PBCV/133-0       98.1%  18.5%    SKIVYQY-------DLDGMYID----KFRSCREAGRSLGK-------GHKYITECVRD--ERQDVY-----GFRWSYD   
 9 endoDNAase_SP82  96.2%  24.1%    IRPVISI-------SPEGVIR-----HHRSITQASKETGV-------TNASISNNLNK--GSRLMS-----GYRFLYK   
10 endoDNAase_phiE  96.2%  18.5%    KRPVISI-------SPDGVEK-----YHGSIMEASRYTGV-------GNSSIWKALNK--GSVLAS-----GYKFKHA   
11 GIYCOI_Pa/1-60   96.2%  33.3%    IKAVFVY-------DINRKFIG----KYDGVTDAQKALNL-------SHSTIKKYAKL--GAVYGG------YIFSYE   
12 hyp360_Am3/1-60  98.1%  35.2%    AKATFVY-------DSDNNFVG----EFGSVRAAAKALNI-------PKSTANAHVDD--GYLIGG-----KYYFYSS   
13 Y03E_BPT4/1-0    98.1%  28.1%    GKPIYQY-------DLNGNFIR----KYRCITDAAEDMSY------SCSTSIKQCVDG-KRKTAGG----FQWKYYYS   
14 ORF_TRIPA        94.3%  13.0%    GKPTYMY-------SGDKSTLL---FIFDSTRDAARQLGI-------AVNSLTLVLKT--IERSK------GIISLI-   
15 Y03E_BPT4/2-0    98.1%  18.5%    NVPVFQY-------DTTGKLLR----VFPRIKDAAVSVKG-------CMSNIKKCISG--KSKIAY-----GYVWAYS   
16 e11_bIL170/1-58  98.1%  13.0%    FKKVIQL-------DLNDNVLN----EFESMVQAEQETGV-------SRRNISSCCNG--KRKSAG-----RFKWRKK   
17 YG31_BPSP1/1-57  96.2%  16.7%    QKPIIVI-------SPDGIEK-----EYPSTKCACEELGL-------TRGKVTDVLKG--HRIHHK-----GYTFRYK   
18 Y04I_BPT4/1-56   94.3%   9.3%    TKTVIGY-------SPDGNTI-----ELTGATEIRNAGFF--------HSAVYKCCKG--IQSIHK-----GYTWKYK   
19 SGC1_Nc2/1-59    98.1%  14.8%    PLGVGIY-------DLEDNLIL----KFSNNVELAKYLGI-------SKVTVGKYLNS--GLVYNK-----TYRFKPI   
20 GIYND1_Pa/1-0    96.2%  21.1%    PVYLYTYS----EGSLKDNYI-----KFESINKLSQYLNI-------SRETINIYLNT--YVPYKS-----NIFLTDL   
21 GIYND1_PA/1-0    96.2%  24.6%    TIYTYSLHKQGDHEAINPAYI-----KYNSIGEASKMEKI-------AYGTILLFRDT--NLPFRG-----KLYFTKP   
22 ORF_Che/1-59     98.1%  25.9%    SKPLGLY-------DTNNQLLK----EFESITEASMYFKC-------DRKKISRYLKS--SKNFNG-----LGYLKQV   
23 ORF3_Che/1-61   100.0%  29.6%    PAPINLV-------DSDGKILA----SFKSISAAAKHYGG-------CRKHLSQHVDKP-NMKYKG-----LGYLKSV   
24 SGC3_Pa2/1-59   100.0%  29.6%    TRPVVLY-------NLNGTVYG----EYSTILDAAKSINC-------DEKTIRRALKTE-KRLVKR-----QWIVKDF   
25 GIYCytb_Pa/1-61  98.1%  20.0%    RAISFVVN------DLEKKTLT----EFSSLRAAARELHI-------AEVSIKKYLNN--SKLFKN-----RYIFTSK   
26 coII_Pa/1-59     96.2%  29.1%    LVNIYEKS------DSKGFQLIG---SFVSIRRAAKFLGI-------SSNTIRLYINS--GKIFKD-----RYKFTS-   
27 SGC3_Pa/2-0     100.0%  20.0%    SMKVEVT-------NVDTKEVT----VYSSISAAAKALGY-------RQPSLSLYLKENRSKPFKG-----KYLFKLV   
28 SGC3_Pa/1-0     100.0%  18.2%    GIEVEVT-------DLKTNTTT----TYHAIRAAARALDI-------DKRYIEHYIYLKQNKPVLG-----RYTFKLN   
29 COI6_Pa/1        98.1%  12.7%    SKSLYMY-------NRDMTNLYF---FSTQQIDFIRKLNI-------HHTTFTKHLEN--GTFYLG-----KYLFSRM   
30 COI6_Pa/2        96.2%  11.7%    SKAVILT-------DVNNLENTI---VLPSLGKCVEYLQDKG--LSASQVSLVKYINS--GKAYKG------YLCKLP   
31 COIi4_Aa/1-57    98.1%  14.8%    AYPVYVY-------NSYKKLVV----IFPSVSTLAKLIKS-------NHSTIVDIIKE--QTIFRG-----EWYFTNL   
32 SPO1_PBCV1/1-59  98.1%  16.4%    SLPVIAT-------NVSSKEVS----YFSSLHEAAEKIKG------ANFKHISACINK--DRKTHA-----GYIWSPP   
33 ORF41_r1t/1-57   88.7%  13.8%    LSWLYVI-------ETI---------EFKSISETAKYFNC-------TIGNISLMLEK--GTIGQRGI-TRGYQFSYK   
34 GIYND1_Pa/2-0    98.1%  21.1%    KVWVYSI-------DTKSNIVKN---IYNSIGETIKILNV-------SHNLVNNHLDK---WIPGGIK--NNYLFSNE   
35 GIYND1_PA/2-0    98.1%  17.5%    KVWAYDAL------TLDLIKGS----PFESKTQASNILGI-------SRNVINYFIDT---KKAEGIK--GTYLFSRP   
36 GIYND1_Pa/3-0    96.2%  20.7%    NVWIYNAN------TLELIG------NFNSIKKAADYFNV-------DYRSLINHLDTK-EAINKGGK--FIYLFKNE   
37 GIYND1_PA/3-0    98.1%  16.9%    KVYAYNAI------TLDLINNE----PFSSLSDTADYFNV-------NYRTITRHLDT---KFATKQNNMSVYFFKKV   
38 orf36.1_SPP1/1-  98.1%  19.6%    KSPIKVT-------LVDPRTKKHL--PFYSMGAASRFLGH-------HSGYISRKVGN--GNFEAD-----GYIIKLE   
39 hyp301_Amm1/1-6 100.0%  24.1%    KIRVLIL-------DTQSNTVD----IFDNTVLASEFIDV-------HKGTISKNIKSG--RLLYNR----YLILKIF   
40 ORF6_Che/1-57    98.1%  13.2%    AKGVKLL-------DTVNGTIK----YFDTTTQCAEYLKM-------HRSNLSNVLYG---SGLYK-----HYKVSFV   
41 GIYND1_Pa/4-0    96.2%  32.2%    SIWVYKYV------DDKLTLINDNKPSYISKLSLSKDLKI-------SVKTINKYLDS--NESYKG------YYFYSI   
42 hyp211_Amm1/1-5  96.2%  16.4%    SRVVYKID------DNTKEVLA----TYVSRKAAGEANKL-------SDGVLSRRINK--RVVENG------VFFSYE   
43 GIYND1_PA/4-0    98.1%  10.3%    EIWVYKLD-----KQGKLILLPDQ--PFKTKREAVRVLHM-------HHTVITKYMDT--GTEYKG-----LLLYSTP   
44 e20_bIL170/1-51  94.3%  11.1%    IKRALGI-------KVKWNGK-----EFRSFSDLAKYVGV-------SHQSVSRNYSK--GYKLKG------YIIEVV   
45 e37_bIL170/1-52  94.3%   7.3%    GKKYSSK-------KIIWNDI-----VFESVSEFCRKTGY------KSTSGIAKSVRK--GWKVKG------HLISYL   
46 TEV2_BPT4        92.5%  18.9%    IHPVPEY--------VKINDN-----IYKSFVDAAKDLKL-------HPSRIKDLCLD---DNYPN------YIVSYK   
47 Q36230           98.1%  21.3%    KGGVFMY-------DKNKVFIG----YISSMKNTEIYFAKLGYLHGAKRTSMGKYSVN--NKLFLN-----NYYLYKS   
   consensus/100%                   ......h......................t...h.................h....................h.....   
   consensus/90%                    .h.h..h.......p.p..........h.sh.thtp.hth.......t.t.l...htt..............hhh...   
   consensus/80%                    .h.lh.h.......s.p...h......atuhtpssc.hth.......ptttltphhpt...t.hht......ahht..   
   consensus/70%                    th.lh.h.......shptphl......apShtpsuchhth.......spsslsphlps..tphhts.....tahhp..