cov pid 1 [ . . . . : . . . 80 1 CD4_CANFA- 100.0% 100.0% AVELPCQTSQKKN---------IHFNWRDSSMVQI-LGNQGSFWTVGS----------------SRLKHRVESKKNL--- 2 OX2G_RAT-1 89.5% 11.6% TASLRCSLKTTQEP--------LIVTWQKKK------AVGPENMVTYSK----AHGVVIQP----TYKDRINITEL---- 3 A33_HUMAN-119 92.1% 19.3% SVTLPCTYHTSTSSR---E---GLIQWDKLLL--THTERVVIWPFS--------NKNYIHGE---LYKNRVSISNNA--- 4 HV1D_HUMAN-98 93.4% 13.8% SVRVSCKTSGGTFVD-------YKGLWVRQAP-----GKGLEWVGQIPL-------RFNGEVKNPGSVVRVSVSLKP--- 5 HV2A_HUMAN 92.1% 14.6% PLTLTCTFSGFSLSTS-R----MRVSWIRRPP-----GKALEWLARIBB----BDKFYWST----SLRTRLSISKND--- 6 HV2C_HUMAN 92.1% 13.5% TLTLTCTFSGFSLSGE-T----MCVAWIRQPP-----GEALEWLAWDIL----NDDKYYGA----SLETRLAVSKDT--- 7 HV2G_HUMAN 90.8% 15.9% TLSLTCTVSGSTFSND-------YYTWVRQPP-----GRGLEWIGYVFY------HGTSDDTT--PLRSRVTMLVDT--- 8 HV2I_HUMAN-117 92.1% 16.1% TLSLTCAVFGGSFSG-------YYWSWIRQPP-----GRGLEWIGEINH---SGSTNYKT-----SLKSRVTISLDT--- 9 CD4_RABIT- 89.5% 46.6% IVELPCQSSQKRNS---------VFNWKHAN--------QVKILGNQGS---SSSSFWLKGN--SPLSNRVESKKNM--- 10 MYP0_HETFR 94.7% 19.1% DVTLYCGFWSNEYVSD-----LTTLSWRFRPDN---SRDIISIFHYG------NGVPYIE--KWGQFRGRVEWVGDI--- 11 HV02_CAICR 92.1% 14.8% SLRLSCKGSGFTFSN-------YWLGWVRQAP-----GKALNGSLPLTPL--AAAPTYIP-----GVSGRFTISRDN--- 12 HV11_MOUSE 92.1% 12.5% SVKLSCKASGYTFTS-------YLMHWVNQRP-----GRGLEWIGRIDP--NSGGTTYNE-----HFRSKATLTIDK--- 13 HV1A_HUMAN 90.8% 13.5% SVKVSCKASGGTFSRS-------AIIWVRQAP-----GQGLEWMGGIVPM--FGPPNYAQ-----KFQGRVTITADE--- 14 HV1E_HUMAN-98 92.1% 13.6% SVRVTCKTSGGTFSG-------YTISWVRQAP-----GRGLEWVGSP-------AKWTDPFQGVYIKWERVTVSLKP--- 15 CD4_MACNE- 100.0% 51.3% TVELTCNASQKKN---------TQFHWKNSNQIKI-LGIQGSFLTKGP----------------SKLSDRADSRKSL--- 16 HV34_MOUSE 92.1% 18.9% SMKLSCVASGFTFSN-------YWMNWVRQSP-----EKGLEWVAEIRLK----SHNYAIHYAE-SVKGRFTISRDD--- 17 HV53_MOUSE 92.1% 12.5% SLKLSCAASGFTFSS-------YYMSWVRQTP-----EKRLELVAAINS--NGGSTYYPD-----TVKGRFTISRDN--- 18 VPR2_MOUSE 92.1% 17.0% TIRLSCTLSNDHNIG---I---YSIYWYQQRP-----GHPPRFLLRYFS-----HSDKHQGP---DIPPRFSGSKDT--- 19 HV15_MOUSE-117 90.8% 12.4% SVKISCKGSGYTFTD-------YAMHWVKQSH-----AKSLEWIGVI--STYNGNTSYNQ-----KFKGKATMTVDK--- 20 TVA1_HUMAN-113 92.1% 18.1% DVTLDCVYETRDTT--------YYLFWYKQPPS----GELVFLIRRN---------SFDEQN---EISGRYSWNFQK--- 21 CD4_SAISC- 100.0% 52.6% VVELPCETSLKKN---------VPFHWKTSDQIKI-LGVQNYFVTRGQ----------------SKLTDRIDSKKSS--- 22 FPRP_RAT-1 94.7% 19.3% ELVIPCNVSDYDGPS---E---QNFDWSFSSSG----SSFVELASTW-------EVGFPA----QQYRERLQRGDILL-- 23 PGCB_RAT-1 98.7% 14.6% ALAIPCHVHHLRPPPS-RR---AAPGFPRVKWTFLSGDREVEVLVARGL------RVKVNE----AYRFRVALPAYP--- 24 BUTY_BOVIN 92.1% 18.2% DAELPCRLSPNVSAKG------MELRWFREK------VSPAVFVSREGQ------EQEGEEMA--EYRGRVSLVEDH--- 25 BUTY_MOUSE-90 89.5% 15.6% DAELTCGFSPNASSE---Y---MELLWFRQT-------RSTAVLLYRD---GQEQEGQQMT----EYRGRATLATAGL-- 26 MYP0_BOVIN 94.7% 18.0% QVTLYCSFWSSEWVSD-D----LSFTWRYQP---EGGRDAISIFHYAKGQ------PYIDE--VGTFKERIQWVGDP--- 27 HV2H_HUMAN-117 92.1% 14.6% TLTLTCTFSGLSVNTR-G----MSVSWIRQPP-----GKALEWLARIDWD----DDKYYGT----SLETRLTISKDT--- 28 HV22_MOUSE 92.1% 16.7% SLRLSCATSGFTFSD-------FYMEWVRQPP-----GKRLEWIAASRNKANDYTTEYSA-----SVKGRFIVSRDT--- 29 HV2D_HUMAN 92.1% 18.0% TLTLTCTFSGFSLSTS-G----VGVGWIRQRP-----GKALEWLAFINWD---DDNRYSP-----SLRSRLTGTKDT--- 30 CD86_HUMAN 86.8% 15.9% TADLPCQFANSQNQSL-SE---LVVFWQDQEN-----LVLNEVYLGKEK-----FDSVHS-----KYMGRTSFDSDS--- 31 HV62_MOUSE-116 93.4% 14.8% SIALTCTVTGISITT-----GNYRWSWIRQFP-----GNKLEWIGYIYY------SAITSYN--PSPKSRTTITRDT--- 32 HV43_MOUSE 92.1% 16.1% SLSITCTVSGFSLTG-------YGVNWVRQPP-----GKGLEWLGTIWGN---GSTDYNS-----TLKSRLTITKDN--- 33 HV2C_RABIT-112 92.1% 18.8% TLTLTCTVSGFSLSS-------YGVNWVRQAP-----GKGLEWIGYIGTG------TYLAN----WAKSRSTITSNT--- 34 HV2F_HUMAN 92.1% 15.7% TLSLTCIVSGGPIRRT-G----YYWGWIRQPP-----GKGLEWIGGVYYT----GSIYYNP----SLRGRVTISVDT--- 35 KV4B_HUMAN-115 89.5% 14.9% RATINCKSSQSVLYS---SNNKNYLAWYQQKP-----GQPPKLLIYWAST------RES------GVPDRFSGSGSG--- 36 HV01_HETFR-115 92.1% 18.4% SLRLTCKTSGFSLGS-------YYMTWVRQVP-----GQGLEWLVSYHSS----SYQYYAP----EIKDRFTASKDT--- 37 HV47_MOUSE 90.8% 15.9% TLSLTCSVTGDSITSD-------YWNWIRKFP-----GNKLEHMGYISY----SGSTYYNP----SLKSRISITRDT--- 38 CD8A_BOVIN-121 92.1% 20.7% KVELQCELLQSGMAT--------GCSWLRHIP---GDDPRPTFLMYLSA------QRVKLAE---GLDPRHISGAKV--- 39 LV2K_HUMAN-91 89.5% 13.1% SITISCTGTTSDVGG------YDFVSWYQQHP-----GKAPKLLIYDVN------SRPS------GISNRFSGSK----- 40 LV6B_HUMAN 92.1% 15.7% TVTMSCTRTSDSIASN-------YVQWYRQRP-----GGAPTTLIYDTN------QRP------YGVPNRFSGSFDS--- 41 HV01_XENLA-114 92.1% 18.4% SLRLTCTVSGFELTS-------YYVYWIRQPP-----RKTLEWIGVVRT---DGSTAIAD-----SLKNRVTITKDN--- 42 HV1C_HUMAN-112 93.4% 11.5% SVRVSCKASGYTFID-------SYIHWIRQAP-----GHGLEWVGWINP------NSGGT-----NYAPRFQGRVTM--T 43 HV3V_HUMAN-96 92.1% 14.0% SLKLSCTASGFSYSN-------YVMTWVRQAP-----GKGLEWVTNIRP---DETEKFY------SDSVRFTVSRDN--- 44 PD1_HUMAN-124 88.2% 18.6% NATFTCSFSNTSESF--------VLNWYRMSP-----SNQTDKLAAFPE-----DRSQPGQ----DCRFRVTQLPNG--- 45 HV03_CAICR 92.1% 15.9% SLRLSCKASGFTFSD-------TWMAWARQPP-----GKGLQWVGEING--NSETIRYAP-----EVKGRLTISRDN--- 46 BUTY_HUMAN-126 92.1% 17.0% DAELPCRLSPNASAEH------LELRWFRKK------VSPAVLVHRDGR------EQEAEQMP--EYRGRATLVQDG--- 47 PVR_CERAE- 85.5% 17.2% SVTLPCYLQVPGMEET-HV---SQLTWSRH-------GESGSMAVFHQT----QGPNYSEPKRLEFVAARLGTELRD--- 48 MOG_HUMAN-129 90.8% 20.2% EVELPCRISPGKNAT------GMEVGWYRPP------FSRVVHLYRNG-----KDQDGDQA-P--EYRGRTELLKDAI-- 49 KV14_RABIT-90 89.5% 18.3% TVTISCQASQSVYS--------NNLSWFQQKP-----GQPPKLLIYKA-------STLAS-----GVPSRFKGSG----- 50 CD8B_RAT-1 97.4% 16.7% TAKMSCEAKTFPKG--------TTIYWLRELQDSN-KNKHFEFLASRT------STKGI------KYGERVKKNMT---- 51 KV3J_HUMAN-110 88.2% 19.3% RVTLSCRASQSVSS--------SYLTWYQQKP-----GQAPRLLIYG--------ASTRAT----SIPARFSGSG----- 52 PVR_MOUSE-132 92.1% 18.7% TVELPCHLLPPTTER------VSQVTWQRLD-----GTVVAAFHPSF-------GVDFPNSQ---FSKDRLSFVRARP-E 53 HV01_CAICR-117 93.4% 12.6% SLRLSCKASGFTFGG-------YGMFWVRQAP-----GKGLDWVATINT---DGSSQWYS----PAVQGKFTISRGN--- 54 KV3I_MOUSE-114 88.2% 14.0% RATISCRASESVDSYG-----NSFMHWYQQKP-----GQPPKLLIYL-------ASNLES-----GVPARFSGSG----- 55 CD8B_MOUSE 94.7% 14.8% TAKMSCEVKSISKLT--------SIYWLRERQD--PKDKYFEFLASWSS---SKGVLYGE-----SVDKKRNIILES--- 56 HV1F_HUMAN 92.1% 15.9% SARLSCKVSGDDFNT-------YDIHWVRQAP-----GRGLEWMAVVHPS--DDRTTYGP-----RSQARFTVTRDS--- 57 HV1H_HUMAN 92.1% 13.8% SVRISCKASGYAFEN-------YYIHWVRQAP-----GLGLEWMGIFNPV----AGAVSSE----KFRDRLVMSSDT--- 58 KV2E_HUMAN 88.2% 14.9% PASISCRSSQSLLHSN-GY---NYLDWYLQKP-----QQSPQLLIYL-------GSNRAS-----GVPDRFSGSGS---- 59 HV37_MOUSE 92.1% 12.5% SLKLSCAASGFDFSR-------YWMSWVRQAP-----GKGLEWIGEINP--DSSTINYTP-----SLKDKFIISRDN--- 60 HV3K_HUMAN 92.1% 15.9% SLRLSCSSSGFIFSS-------YAMYWVRQAP-----GKGLEWVAIIWD--DGSDQHYAD-----SVKGRFTISRDN--- 61 CD8A_CANFA-121 90.8% 14.8% QVELQCQVLLSTAAP--------GCSWLYQRN--EPAARPVFLMYI-------SQSRAKPAE--GLDTKHISGQKK---- 62 HV3U_HUMAN 92.1% 14.8% SLRLSCAASGFNFHE-------YNMHWLRQGP-----GKGPEWVSTITW--NGGSVLYAD-----SVKGRFAISRDN--- 63 PLK_BOVIN-141 89.5% 19.1% NVTLPCKFYRDPTAFG-SGTHKIRIKWTKLT---SDYLKEVDVFVS----MGYHKKTYG------GYHGRVFLKGG---- 64 A1BG_HUMAN 88.2% 11.0% GGHYTCRYRLHDN----------QNGWSGD-------SAPVELILS---DETLPAPEFSP-XX-PLEGARFALVRED--X 65 C166_CARAU 92.1% 11.8% SGIYKCSLLDNDVM---ESTQFVTVSFLDV--SLTPTGKVLKNVGE------NLIVSLDKNA---SSEAKVTWTKDN--- 66 CD28_HUMAN 88.2% 18.0% AVNLSCKYSYNLF-------SREFRASLHK-----GLDSAVEVCVV--------YGNYSQQLQV-YSKTGFNCDGKL--- 67 CD86_MOUSE 89.5% 14.0% TAYLPCPFTKAQN----ISLSELVVFWQDQQ-----KLVLYEHYLG--------TEKLD------SVNAKYLGRTSF--- 68 CTL4_HUMAN 94.7% 7.5% FIPVFCKAMHVAQPAVVLASSRGIASFVCEYA-SPGKATEVRVTVL--RQADSQVTEVCAATY--MMGNELTFLDDSICT 69 THY1_MOUSE 85.5% 12.8% NLRLDCRHENNTK-----DNSIQHEFSLTRE-------KRKHVLSG--------TLGIEH-----TYRSRVTLSNQ---- consensus/100% .h.h.C...............................................................t.......... consensus/90% thpl.Cth................h.W.p.............hhh........................+hth....... consensus/80% shplsCphpt.t............htWhpp.......tp.hphhh............h.......thtsRhphthp.... consensus/70% slplsCphos.shst........hhtWhcp.......spthchlhhh.........th.......thpsRhshsts.... cov pid 81 . 1 ] 107 1 CD4_CANFA- 100.0% 100.0% --WDQGSFPLVIKDLEVADSGIYFCDT 2 OX2G_RAT-1 89.5% 11.6% ---GLLNTSITFWNTTLDDEGCYMCLF 3 A33_HUMAN-119 92.1% 19.3% ---EQSDASITIDQLTMADNGTYECSV 4 HV1D_HUMAN-98 93.4% 13.8% ---SFNQAHMELSSLFSEDTAVYYCAR 5 HV2A_HUMAN 92.1% 14.6% ---SKNQVVLIMINVNPVDTATYYCAR 6 HV2C_HUMAN 92.1% 13.5% ---SKNQVVLSMNTVGPGDTATYYCAR 7 HV2G_HUMAN 90.8% 15.9% ---SKNQFSLRLSSVTAADTAVYYCAR 8 HV2I_HUMAN-117 92.1% 16.1% ---SKNLFSLKLSSVTAADTAVYYCAR 9 CD4_RABIT- 89.5% 46.6% --WDQGSFPLVIKDLRMDDSGTYICEV 10 MYP0_HETFR 94.7% 19.1% ---SKHDGSIVIRNLDYIDNGTFTCDV 11 HV02_CAICR 92.1% 14.8% ---ARALLHLDMSDLRPEDTGRYHCER 12 HV11_MOUSE 92.1% 12.5% ---PSSTAYMQLSSLTSEDSAVYYCAR 13 HV1A_HUMAN 90.8% 13.5% ---STNTAYMELSSLRSEDTAFYFCAG 14 HV1E_HUMAN-98 92.1% 13.6% ---SFNQAYMELVNLFNEDGAVYYCAR 15 CD4_MACNE- 100.0% 51.3% --WDQGHFSMIIKNLKIEDSDTYICEV 16 HV34_MOUSE 92.1% 18.9% ---SKSSVYLQMNNLRAEDTGIYYCST 17 HV53_MOUSE 92.1% 12.5% ---AKNTLYLQMSSLKSEDTALYYCAR 18 VPR2_MOUSE 92.1% 17.0% ---ARNLGYLSISELQPEDEAVYYCAV 19 HV15_MOUSE-117 90.8% 12.4% ---SSSTVHMELARLTSEDSANLYCAR 20 TVA1_HUMAN-113 92.1% 18.1% ---STSSFNFTITASQVVDSAVYFCAL 21 CD4_SAISC- 100.0% 52.6% --WDRGSFPLLIKDARIEDSETYICEV 22 FPRP_RAT-1 94.7% 19.3% RRTANDAVELHIKNVQPSDQGHYKCST 23 PGCB_RAT-1 98.7% 14.6% --ASLTDVSLVLSELRPNDSGVYRCEV 24 BUTY_BOVIN 92.1% 18.2% --IAEGSVAVRIQEVKASDDGEYRCFF 25 BUTY_MOUSE-90 89.5% 15.6% ---LDGRATLLIRDVRFSDQGEYRCLF 26 MYP0_BOVIN 94.7% 18.0% ---HRKDGSIVIHNLDYGDNGTFTCDV 27 HV2H_HUMAN-117 92.1% 14.6% ---SKNQVVLKVTNMDPADTATYYCAR 28 HV22_MOUSE 92.1% 16.7% ---SQSILYLQMNALRAEDTAIYYCAR 29 HV2D_HUMAN 92.1% 18.0% ---SRNQVVLTITNMDPVDSGTYFCAH 30 CD86_HUMAN 86.8% 15.9% -------WTLRLHNLQIKDKGLYQCII 31 HV62_MOUSE-116 93.4% 14.8% ---SKNQFFLEMNSLTAEDTATYYCAR 32 HV43_MOUSE 92.1% 16.1% ---SKSQVFLKMNSLQTDDTARYYCAS 33 HV2C_RABIT-112 92.1% 18.8% ---NENTVTLKMTSLTGADTATYFCGS 34 HV2F_HUMAN 92.1% 15.7% ---SRNQFSLNLRSMSAADTAMYYCAR 35 KV4B_HUMAN-115 89.5% 14.9% -----TDFTLTISSLQAEDVAVYYCQQ 36 HV01_HETFR-115 92.1% 18.4% ---SNNIFALDMKSLKTEDTAMYYCAR 37 HV47_MOUSE 90.8% 15.9% ---SKNQYYLQLNSVTSEDTATYYCTS 38 CD8A_BOVIN-121 92.1% 20.7% ---SGTKFQLTLSSFLQEDQGYYFCSV 39 LV2K_HUMAN-91 89.5% 13.1% ---SGNTASLTISGLQAEDEADYYCSS 40 LV6B_HUMAN 92.1% 15.7% ---SSNSASLTISGLTNDDTAMYFCQS 41 HV01_XENLA-114 92.1% 18.4% ---GKKQVYLQMNGMEVKDTAMYYCTS 42 HV1C_HUMAN-112 93.4% 11.5% RDASFSTAYMDLRSLRSDDSAVFYCAK 43 HV3V_HUMAN-96 92.1% 14.0% ---ARNSVSNSMFLQRVEDTATYYCAR 44 PD1_HUMAN-124 88.2% 18.6% -----RDFHMSVVRARRNDSGTYLCGA 45 HV03_CAICR 92.1% 15.9% ---TQNLLFLQISSLKPEDTATYYCAR 46 BUTY_HUMAN-126 92.1% 17.0% --IAKGRVALRIRGVRVSDDGEYTCFF 47 PVR_CERAE- 85.5% 17.2% -------ASLRMFGLRVEDEGNYTCLF 48 MOG_HUMAN-129 90.8% 20.2% ---GEGKVTLRIRNVRFSDEGGFTCFF 49 KV14_RABIT-90 89.5% 18.3% ---SGTQFTLPISGVECDDAATYYCQG 50 CD8B_RAT-1 97.4% 16.7% LSFNSTLPFLKIMDVKPEDSGFYFCAM 51 KV3J_HUMAN-110 88.2% 19.3% ---SGTDFTLTISSLQPEDFAVYYCQQ 52 PVR_MOUSE-132 92.1% 18.7% TNADLRDATLAFRGLRVEDEGNYTCEF 53 HV01_CAICR-117 93.4% 12.6% ---SQNMLYLQMSSLTPEDTATYYCAR 54 KV3I_MOUSE-114 88.2% 14.0% ---SRTDFTLTIDPVEADDAATYYCQQ 55 CD8B_MOUSE 94.7% 14.8% --SDSRRPFLSIMNVKPEDSDFYFCAT 56 HV1F_HUMAN 92.1% 15.9% ---STTTVYMELTALISADTAIYYCAR 57 HV1H_HUMAN 92.1% 13.8% ---SANTVSMQLRNLRSDDTGRYFCAR 58 KV2E_HUMAN 88.2% 14.9% ----GTDFTLKISRVEAEDVGVYYCMQ 59 HV37_MOUSE 92.1% 12.5% ---AKNTLYLQMSKVRSEDTALYYCAR 60 HV3K_HUMAN 92.1% 15.9% ---SKNTLFLQMDSLRPEDTGVYFCAR 61 CD8A_CANFA-121 90.8% 14.8% ---TDSTYSLTLSRFRKEDEGYYFCSV 62 HV3U_HUMAN 92.1% 14.8% ---AQKTLYLQLNILRPEDTAFYYCAK 63 PLK_BOVIN-141 89.5% 19.1% ---SDNDASLVITDLTLEDYGRYKCEV 64 A1BG_HUMAN 88.2% 11.0% X-PAGTEALFELHNISVADSANYSCVY 65 C166_CARAU 92.1% 11.8% ---RKLDKLPDFSKLTYSDAGLYVCDV 66 CD28_HUMAN 88.2% 18.0% ---GNESVTFYLQNLYVNQTDIYFCKI 67 CD86_MOUSE 89.5% 14.0% ---DRNNWTLRLHNVQIKDMGSYDCFI 68 CTL4_HUMAN 94.7% 7.5% GTSSGNQVNLTIQGLRAMDTGLYICKV 69 THY1_MOUSE 85.5% 12.8% ---PPYIKVLTLANFTTKDEGDYFCEL consensus/100% ...........h......p.t.h.C.. consensus/90% .....t.h.h.h.thp.tDtu.YhC.. consensus/80% ...stsph.hphpslp.tDpuhYhCth consensus/70% ...spsph.LplpslpspDsuhYhCth