Family alignment for the IGc2 domain, displayed in

                     cov    pid  1 [        .         .         .         .         :         .         .         . 80 
 1 ALC_MOUSE-308P 100.0% 100.0%    LLSLTCLVRAFNPKEVLVRWL--HGNE-ELSPESYLVFEPLKEPGEGATTYLVTSVLRVSAE-TWKQGDQYSCMVGHEAL    
 2 MUC_SUNMU-421P  97.5%  42.5%    SASITCLVKDFSPPDVFVQWQ-HHGQ--PVDPKHYVTSNPTPEP-QNPGLYFVHSILTVSEK-DWSSGESFSCVVGHEAL    
 3 B2MG_MELGA-83P  88.6%  16.2%    KNVLNCFAAGFHPPKISITLM-KDGV----PMEGAQYSDMSFN---DDWSFQRLVYADF----TPSSDAVYTCKVDHETL    
 4 LAC2_MOUSE-89P  92.4%  23.8%    KATLVCLISNFSPSGVTVAWK-ANGT---PITQGVDTSNPTKE----GNKFMASSFLHLTSD-QWRSHNSFTCQVTHEGD    
 5 B2MG_PIG-103Q0  87.3%  20.0%    PNYLNCYVSGFHPPQIEIDLL-KNGE-----KMNAEQSDLSFS---KDWSFYLLVHTEF----TPNAVDQYSCRVKHVTL    
 6 MUC_MESAU-418P  97.5%  41.2%    SATVTCLVKGFSPADIFVQWL-QRGQ--PLSQDKYVTSAPMREP-QAPHLYFTHSVLTVTEE-EWNSGETYTCVVGHEAL    
 7 KAC_MOUSE-90P0  94.9%  20.0%    GASVVCFLNNFYPKDINVKWK-IDGS---ERQNGVLNSWTDQDS--KDSTYSMSSTLTLTKD-EYERHNSYTCEATHKTS    
 8 TCC3_MOUSE-94P  88.6%  22.2%    TGTYLCILEKFFPDVIRVYWKDKNG----NTILDSQEGDTLKT----KGTYMKFSWLTVP---ERSMGKEHRCIVKHENN    
 9 HB2L_CHICK-171  89.9%  28.8%    TDRLACYVTGFYPPEIEVKWF-QNGQ---EETERVVSTDVIQN---GDWTYQVLVVLEI----SPRHGDSYVCQVEHTSL    
10 GC1_HUMAN-312P  92.4%  32.5%    QVSLTCLVKGFYPSDIAVEWE-SNGQ----PENNYKTTPPVLD---SDGSFFLYSKLTVDKS-RWQQGNVFSCSVMHEAL    
11 HA2Z_HUMAN-193  89.9%  18.8%    PNILICIVDNIFPPVINITWL-RNGQ---TVTEGVAQTSFYSQ---PDHLFRKFHYLPF----VPSAEDVYDCQVEHWGL    
12 HA2S_MOUSE-171  89.9%  18.8%    PNTLICFVDNIFPPVINITWL-RNSK---SVTDGVYETSFLVN---RDHSFHKLSYLTF----IPSDDDIYDCKVEHWGL    
13 CD11_MOUSE-285  89.9%  21.5%    HRQLVCHVSGFYPKPVWVMCM--RGDQ---EQQGTHRGDFLPN---ADETWYLQATLDV----EAGEEAGLACRVKHSSL    
14 GCAB_MOUSE-317  92.4%  30.0%    EFSLTCMITGFLPAEIAVDWT-SNGR----TEQNYKNTATVLD---SDGSYFMYSKLRVQKS-TWERGSLFACSVVHEVL    
15 ALC2_HUMAN-304 100.0%  60.8%    LVTLTCLARGFSPKDVLVRWL--QGSQ-ELPREKYLTWASRQEPSQGTTTFAVTSILRVAAE-DWKKGDTFSCMVGHEAL    
16 KACB_RABIT-89P  94.9%  17.5%    TATIVCVANKFYPSDITVTWK-VDGT---TQQSGIENSKTPQSP--EDNTYSLSSTLSLTSA-QYNSHSVYTCEVVQGSA    
17 GCAM_MOUSE-312  92.4%  31.2%    QVTLTCMVTDFMPEDIYVEWT-NNGK----TELNYKNTEPVLD---SDGSYFMYSKLRVEKK-NWVERNSYSCSVVHEGL    
18 HA2P_RABIT-164  89.9%  21.2%    PNTLICHIDKFFPPVLNVTWL-RNGQ---PVTEGVSETVFLAS---TEFRFRKFHYLAF----VPSAADVYDCRVEHWGL    
19 LAC1_RAT-89_P2  92.4%  27.5%    KATLVCMVTDFYPGVMTVVWK-ADGT---PITQGVETTQPFKQ----NNKYMATSYLLLTAK-AWETHSNYSCQVTHEEN    
20 B2MG_MUSCR-81P  88.6%  17.5%    PNILNCYVSQFHPPHIEIEML-KNGK----KIPEIEMSDLSFS---KDWSFYILAHTEF----TPTDSDTYSCRVTHVSM    
21 KAC_RANCA-90P1  92.4%  23.8%    SASTVCLVDKFYPGGAQVTW---KGDNK-VISSGVDTSDKIKD---KDNTYSMSSTLTMSS--EEFKYSTMTCEVTHPTL    
22 ALC_RABIT-263P  98.7%  51.2%    QVTLTCLVRGFSPKDVLVSWR-HQGQ--EVPEDSFLVWKSMPESSQDKATYAITSLLRVPAE-DWNQGDTYSCMVGHEGL    
23 RNG6_MOUSE-206  88.6%  22.5%    PNTLVCFISNLFPPTLTVNWQ-LHSA----PVEGASPTSISAV---DGLTFQAFSYLNF----TPEPFDLYSCTVTHEID    
24 GC3M_MOUSE-85P  88.6%  22.5%    SVTLGCLVKGYFPEPVTVKWN--YGAL----SSGVRTVSSVLQ----SGFYSLSSLVTVPS-STW-PSQTVICNVAHPAS    
25 LAC_CHICK-89P2  91.1%  23.8%    KATLVCLINDFYPSPVTVDWV-IDGS----TRSGETTAPQRQ----SNSQYMASSYLSLSAS-DWSSHETYTCRVTHNGT    
26 TCB2_MOUSE-96P  94.9%  23.5%    KATLVCLARGFFPDHVELSWW-VNGK---EVHSGVSTDPQAYKE--SNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL    
27 EPC_MOUSE-396P  97.5%  33.8%    KRTLTCLIQNFFPEDISVQWL-GDGK--LISNSQHSTTTPLKSNG-SNQGFFIFSRLEVAKT-LWTQRKQFTCQVIHEAL    
28 B2MG_BRARE-103  88.6%  20.0%    PNTLICYVSSFHPPDISIELL-KNGQ----VMSDTKQTDLAFE---KGWQFHLTKSVAF----TPEKGDEYTCSVRHMKE    
29 HVCS_HETFR-192  92.4%  22.5%    FATVLCSIIDFHPESITVSWL-KDGQ---HMESGFVTSPTCG----VNGTFSATSRLTVPAR-EWFTNKVYTCQVSHQGV    
30 GCC_RAT-311_P2  92.4%  32.5%    KVSLTCMVTSFYPASISVEWE-RNGE----LEQDYKNTLPVLD---SDESYFLYSKLSVDTD-SWMRGDIYTCSVVHEAL    
31 GC1M_MOUSE-306  92.4%  30.0%    KVSLTCMITDFFPEDITVEWQ-WNGQ----PAENYKNTQPIMN---TNGSYFVYSKLNVQKS-NWEAGNTFTCSVLHEGL    
32 LAC_RABIT-90P0  93.7%  27.5%    KATLVCLISDFYPRTVKVNWK-ADGN---SVTQGVDTTQPSKQS---NNKYAASSFLHLTAN-QWKSYQSVTCQVTHEGH    
33 GC2_CAVPO-312P  94.9%  31.2%    KVSVTCLIINFFPADIHVEWA-SNRV--PVSEKEYKNTPPIED---ADGSYFLYSKLTVDKS-AWDQGTVYTCSVMHEAL    
34 HB2Q_MOUSE-205  89.9%  26.2%    HNTLVCSVTDFYPAKIKVRWF-RNGQ---EETVGVSSTQLIRN---GDWTFQVLVMLEM----TPHQGEVYTCHVEHPSL    
35 1B12_HUMAN-287  89.9%  22.5%    EATLRCWALGFYPAEITLTWQ-RDGE---DQTQDTELVETRPA---GDRTFQKWAAVVV----PSGEEQRYTCHVQHEGL    
36 KAC_HUMAN-90P0  94.9%  22.5%    TASVVCLLNNFYPREAKVQWK-VDNA----LQSGNSQESVTEQDS-KDSTYSLSSTLTLSKA-DYEKHKVYACEVTHQGL    
37 GCB_MOUSE-318P  92.4%  32.5%    DVSLTCLVVGFNPGDISVEWT-SNGH----TEENYKDTAPVLD---SDGSYFIYSKLNMKTS-KWEKTDSFSCNVRHEGL    
   consensus/100%                  ...h.C.h.th.P..h.l.h....t........t................a.h...h.h.........t.h.C.s.....    
   consensus/90%                   ...lhChh.ta.P..l.lth...put.......th.......t....s..a.h.shlth.........p.hsC.V.H.s.    
   consensus/80%                   .solsChlpsFhP..ltlpW...pGp.....tpsh.ps..h.p...ts.pa.h.uhLph....t.pttp.asCpV.H.sh    
   consensus/70%                   psoLsChlpsFaPtslpVpWh..sGp.....ppshpsos.h.p...tstoahhhShLpl....p.pptssaoCpVtHpul    

                     cov    pid 81   ] 83 
 1 ALC_MOUSE-308P 100.0% 100.0%    PMN    
 2 MUC_SUNMU-421P  97.5%  42.5%    PLS    
 3 B2MG_MELGA-83P  88.6%  16.2%    KEP    
 4 LAC2_MOUSE-89P  92.4%  23.8%    TVE    
 5 B2MG_PIG-103Q0  87.3%  20.0%    DKP    
 6 MUC_MESAU-418P  97.5%  41.2%    PHM    
 7 KAC_MOUSE-90P0  94.9%  20.0%    TSP    
 8 TCC3_MOUSE-94P  88.6%  22.2%    KGG    
 9 HB2L_CHICK-171  89.9%  28.8%    QQP    
10 GC1_HUMAN-312P  92.4%  32.5%    HNH    
11 HA2Z_HUMAN-193  89.9%  18.8%    DAP    
12 HA2S_MOUSE-171  89.9%  18.8%    EEP    
13 CD11_MOUSE-285  89.9%  21.5%    GGQ    
14 GCAB_MOUSE-317  92.4%  30.0%    HNH    
15 ALC2_HUMAN-304 100.0%  60.8%    PLA    
16 KACB_RABIT-89P  94.9%  17.5%    SPI    
17 GCAM_MOUSE-312  92.4%  31.2%    HNH    
18 HA2P_RABIT-164  89.9%  21.2%    DAP    
19 LAC1_RAT-89_P2  92.4%  27.5%    TVE    
20 B2MG_MUSCR-81P  88.6%  17.5%    KEP    
21 KAC_RANCA-90P1  92.4%  23.8%    TPA    
22 ALC_RABIT-263P  98.7%  51.2%    AEH    
23 RNG6_MOUSE-206  88.6%  22.5%    RYT    
24 GC3M_MOUSE-85P  88.6%  22.5%    KTE    
25 LAC_CHICK-89P2  91.1%  23.8%    SIT    
26 TCB2_MOUSE-96P  94.9%  23.5%    SEE    
27 EPC_MOUSE-396P  97.5%  33.8%    QKP    
28 B2MG_BRARE-103  88.6%  20.0%    TKK    
29 HVCS_HETFR-192  92.4%  22.5%    TQS    
30 GCC_RAT-311_P2  92.4%  32.5%    HNH    
31 GC1M_MOUSE-306  92.4%  30.0%    HNH    
32 LAC_RABIT-90P0  93.7%  27.5%    TVE    
33 GC2_CAVPO-312P  94.9%  31.2%    HNH    
34 HB2Q_MOUSE-205  89.9%  26.2%    KSP    
35 1B12_HUMAN-287  89.9%  22.5%    PKP    
36 KAC_HUMAN-90P0  94.9%  22.5%    SSP    
37 GCB_MOUSE-318P  92.4%  32.5%    KNY    
   consensus/100%                  ...    
   consensus/90%                   ...    
   consensus/80%                   p..    
   consensus/70%                   pt.