cov    pid  1 [        .         .         .         .         :         .         .         . 80 
 1 IRF7_MOUSE/1-1 100.0% 100.0%    RGVQRVLFGDWLLGEVSSGQYEG-LQWLNEARTVFRVPWKHFGRRDLD-EEDAQIFKAWAVARGRWPPSGVNL-PPPEAE    
 2 24|O75924/1-12  97.6%  75.0%    RAAPRVLFGEWLLGEISSGCYEG-LQWLDEARTCFRVPWKHFARKDLS-EADARIFKAWAVARGRWPPSSRGGGPPPEAE    
 3 IRF3_CHICK/1-1  89.4%  43.9%    GDAQKLRFGPWLLNAVSSGLYRG-LCWIDPDRRIFRIPWKHNARKDVT-SSDVEIFKAWAKASGRYEGNAEDP-------    
 4 |HSIFNRF1A_1/1  90.2%  27.8%    MPITRMRMRPWLEMQINSNQIPG-LIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYKAGEKEPDP-----    
 5 IRF2_CHICK/1-1  90.2%  27.8%    MPVERMRMRPWLEEQINSNTIPG-LKWINKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKYQSGVDKPDP-----    
 6 78|O57578/1-11  90.2%  34.9%    MHPRRVRLKPWLVAQVDSGMYPG-LIWLNREAKRFQIPWKHATRHSPRQEEENTIFKAWAVETGKYQEGADEPDP-----    
 7 IRF5_HUMAN/1-1  90.2%  33.3%    TPPRRVRLKPWLVAQVNSCQYPG-LQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGKYTEGVDEADP-----    
 8 56|ICSB_HUMAN/  89.4%  35.7%    DRNGGRRLRQWLIEQIDSSMYPG-LIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFKEG-DKAEP-----    
 9 19|Q99419/1-11  90.2%  35.7%    VSCGNGKLRQWLIDQIDSGKYPG-LVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKFREGIDKPDP-----    
10 IRTF_HUMAN/1-1  89.4%  32.5%    RARCTRKLRNWVVEQVESGQFPG-VCWDDTAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYKEG-DTGGP-----    
11 IRF3_HUMAN/1-1  90.2%  37.9%    MGTPKPRILPWLVSQLDLGQLEG-VAWVNKSRTRFRIPWKHGLRQDAQ-QEDFGIFQAWAEATGAYVPGRDKPDL-----    
12 46|P88946/1-11  89.4%  16.8%    ASEGKASIKDWIVCQVNSGKFPG-VEWEDEERTRFRIPVTPLADPCFEWRRDGELGVVYIRERGNMPVDASFKG------    
13 AAD21384/1-113  89.4%  15.9%    GGPSAMGLREWIVTHANLATYSG-LFWADDEKTRVVLATTTPWSVGFDYLRDGKMYEDYCNQRNIPLPSGRSRL------    
14 AAD21388        89.4%  17.5%    PSRYGMALKEWLTFKADSGLYPG-LFWADEQKTRLVLAATPPSFPNYDYQRDGQHYDAYCELRHIPLPSGRSRL------    
15 AAD21389/1-113  90.2%  16.8%    MAERDMDLKAWFIEAVESKRYPG-VEWDDEDKTIIRVPWNRCTDSRVDEDYNK-IFDDFCSARGVCQTG--SHAQKFK--    
16 AAD21385/1-115  91.9%  20.8%    MAGRGVDIRAWLVAAVESGEYRG-LVWENEDKTVVRVPWNKVTADRSVWNSEK-FFDDYCNMRGICQGEKPSHYGRFR--    
17 AAD21390/1-116  92.7%  15.2%    RVNRPSGLRAWLLDCCDNDKHPG-MHWLDEEKTLVRLPWNHLKGAGGVSDDERNMYLDYCQFKGIRQTGNRRLSVREC--    
18 AAD21386/1-119  92.7%  19.2%    RVTKPSSLRGWLVECCETGRHPG-MRWVDEERTLIRIPWNHDRGSRGVEEAEKNIFIDYCRSRGILHAAGRELTAKEC--    
19 AAD21391        84.6%  10.4%    IEITHNHLRRWIISNLEANTFPEHLCWCDEEKRSFRISW-HRGMSGMQ------PVVAYCLDR-DLECG-RQHNVSEC--    
   consensus/100%                  .......hh.Wh..thp.t.h.t.h.W.s.tt..h.lsh......t.........h.sah..p.....t...........    
   consensus/90%                   .......ht.Wl..thp.s.h.G.h.W.sttcphh.lsh...h..t.....p..hh.sas..pt....s..t........    
   consensus/80%                   hs.tt.tht.Wlltphpss.a.G.l.W.scp+phhplPWp+.tttshp.pt-t.ha.sas..pGhh..u.pp........    
   consensus/70%                   hs.tthpl+.WLltplsSspasG.lhW.sc-+phhplPWpHssppshs.pt-tthFcsas..pGhh.su.cp.t......    

                     cov    pid 81          .         1         .         .      ] 127
 1 IRF7_MOUSE/1-1 100.0% 100.0%    AAERRERRGWKTNFRCALHSTGRFILRQDNSG-DPVDPHKVYELSRE    
 2 24|O75924/1-12  97.6%  75.0%    TAER---AGWKTNFRCALRSTRRFVMLRDNSG-DPADPHKVYALSRE    
 3 IRF3_CHICK/1-1  89.4%  43.9%    -------AKWKTNFRCALRSTHMFMLLEDRSK-CNDDPHKVYAVASG    
 4 |HSIFNRF1A_1/1  90.2%  27.8%    -------KTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPP    
 5 IRF2_CHICK/1-1  90.2%  27.8%    -------KTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPL    
 6 78|O57578/1-11  90.2%  34.9%    -------AKWKAQLRCALNKSREFKLMYDGTKEVPMNPVKIYEVCDI    
 7 IRF5_HUMAN/1-1  90.2%  33.3%    -------AKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSN    
 8 56|ICSB_HUMAN/  89.4%  35.7%    -------ATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVPE    
 9 19|Q99419/1-11  90.2%  35.7%    -------PTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVPE    
10 IRTF_HUMAN/1-1  89.4%  32.5%    -------AVWKTRLRCALNKSSEFKEVPERGRMDVAEPYKVYQLLPP    
11 IRF3_HUMAN/1-1  90.2%  37.9%    -------PTWKRNFRSALNRKEGLRLAEDRSK-DPHDPHKIYEFVNS    
12 46|P88946/1-11  89.4%  16.8%    -------TRGRRRMLAALRRTRGLQEIGKGIS-QDGHHFLVFRVRKP    
13 AAD21384/1-113  89.4%  15.9%    -------GQAKARLLGAIRKSAYFIEEKDVLRRSFSFANVVFRLRSD    
14 AAD21388        89.4%  17.5%    -------CQARGRLLGAVRKSKYFEEDKEFPTDQFPFTALVFRLRSS    
15 AAD21389/1-113  90.2%  16.8%    -------KIRMLYAVRSHRYLRELTPPSKAGG-VSGERYRLFQLLPE    
16 AAD21385/1-115  91.9%  20.8%    -------KMRFLYDMRHHKSIRELKFINKAYG-RPGARYRLFRLLPE    
17 AAD21390/1-116  92.7%  15.2%    -------KNWLASAIRHSQTVEDVSTEENLSA-PAPNRCRVIRLLPI    
18 AAD21386/1-119  92.7%  19.2%    -------KNWLSSAIRHSQTVSDVSTKDNLST-PYPDRCRIIRLLPI    
19 AAD21391        84.6%  10.4%    -------RKRLLRVLRENAGFE--QDDARATT-TRFGGERFFYLRPA    
   consensus/100%                  .........hh...htt.t.........p..........hhh.h...    
   consensus/90%                   .........hhh.hhtt.pt...h....p..t.......hlhth...    
   consensus/80%                   .......tthhtphhpthpp.t.h....chst...st.h+laplhs.    
   consensus/70%                   .......tph+sphhsAhpp.pthp.htctst.p.spsh+laclhs.