cov pid 1 [ . . . . : . . . 80 1 IOV7_CHICK/1-59 100.0% 100.0% NCSLYASGIGKDGTSWVACPRN-------------------LKPVCGTDGSTYSNECGICLYNRE---------HGANVE 2 IOV7_CHICK_1/1- 100.0% 59.3% DCSKYPSTVSKDGRTLVACPRI-------------------LSPVCGTDGFTYDNECGICAHNAE---------QRTHVS 3 IOVO_CHICK/1-59 100.0% 45.8% DCSRFPNATDKEGKDVLVCNKD-------------------LRPICGTDGVTYTNDCLLCAYSIE---------FGTNIS 4 O13274/1-49 83.1% 32.2% DCQGYGS----------ACTKE-------------------YRPICGSDDVTYENECLFCAAKRE---------NRWGIL 5 IOVO_COTJA/1-50 84.7% 33.9% DCSEYPKP---------ACPKD-------------------YRPVCGSDNKTYSNKCNFCNAVVE---------SNGTLT 6 257598/1-51 86.4% 35.6% ICEHMTESP--------DCSRI-------------------YDPVCGTDGVTYESECKLCLARIE---------NKQDIQ 7 IPST_ANGAN/1-51 86.4% 33.9% SCGEMSAMH--------ACPMN-------------------FAPVCGTDGNTYPNECSLCFQRQN---------TKTDIL 8 IAC2_HUMAN/1-50 84.7% 42.4% NCSQYRLP---------GCPRH-------------------FNPVCGSDMSTYANECTLCMKIRE---------GGHNIK 9 IOVO_MELGA/1-59 100.0% 47.5% DCSRYPNTTSEEGKVMILCNKA-------------------LNPVCGTDGVTYDNECVLCAHNLE---------QGTSVG 10 IPS1_RAT/1-49 83.1% 35.6% NCPKQIM----------GCPRI-------------------YDPVCGTNGITYPSECSLCFENRK---------FGTSIH 11 IPSG_PANLE/1-54 91.5% 44.1% NCSQYNR-----KGSGIACSKQ-------------------LKPICGIDHKTYSNECMFCLLNQN---------KQFQIR 12 IPSG_MELME/1-54 91.5% 42.4% NCSKYNA-----KGSQFACSRH-------------------LDPVCGTDHRTYSNECMFCMLTQN---------KRFSVR 13 G671745/1-49 83.1% 32.2% KCYNELN----------GCTKI-------------------YDPVCGTDGNTYPNECVLCFENRK---------RQTSIL 14 IOV7_CHICK_3/1- 100.0% 42.4% DCSKYKTSTLKDGRQVVACTMI-------------------YDPVCATNGVTYASECTLCAHNLE---------QRTNLG 15 IAC1_BOVIN/1-49 83.1% 30.5% DCKVYTE----------ACTRE-------------------YNPICDSAAKTYSNECTFCNEKMN---------NDADIH 16 Q22452/1-46 78.0% 30.5% KCSE-------------QCTMN-------------------SAHVCGTDGKTYLNECFLKLAACK---------EQKDIL 17 G1911820/1-51 86.4% 35.6% ACSNYDLKK--------GCAKI-------------------FDPVCGTDNILYSNECLLCFQNLQ---------RKTNVR 18 IAC2_BOVIN/1-52 88.1% 25.4% DCAEFKDPKV-------YCTRE-------------------SNPHCGSNGETYGNKCAFCKAVMK---------SGGKIN 19 IELA_ANESU/1-46 78.0% 27.1% DCPL-------------ICTMQ-------------------YDPVCGSDGITYGNACMLLGASCR---------SDTPIE 20 IPSG_CANFA/1-49 83.1% 27.1% ECTEYSD----------MCTMD-------------------YRPLCGSDGKNYSNKCSFCNAVKK---------SRGTIF 21 IOV7_CHICK_5/1- 88.1% 23.7% HCREFQKVSP-------ICTME-------------------YVPHCGSDGVTYSNRCFFCNAYVQ---------SNRTLN 22 AGRI_RAT/1-47 79.7% 30.5% VCKKN------------ACPAT-------------------VAPVCGSDASTYSNECELQRAQCN---------QQRRIR 23 O35679/1-51 86.4% 32.2% FCEHMAELP--------NCPQT-------------------PNLICGTDGLTYENECHLCLTRMK---------TMKDIQ 24 Q26057/1-47 78.0% 28.3% QCPT-------------ICTQQ-------------------YDPVCGTDGKTYGNSCELGVAACNN--------PQLNLK 25 IACS_PIG/1-52 88.1% 27.1% DCDVYRSHLF-------FCTRE-------------------MDPICGTNGKSYANPCIFCSEKLG---------RNEKFD 26 Q26057_1/1-47 78.0% 33.3% QCPS-------------ICPLD-------------------YNPVCGTDGKTYSNLCALRIEACNN--------PHLNLR 27 O00468/1-46 78.0% 25.4% ECLQ-------------ACSSL-------------------YDPVCGSDGVTYGSACELEATACT---------LGREIQ 28 IOV7_CHICK_6/1- 98.3% 47.5% DCTQYLSNTQN-GEAITACPFI-------------------LQEVCGTDGVTYSNDCSLCAHNIE---------LGTSVA 29 Q13086/1-46 78.0% 27.1% ACQF-------------QCHTN-------------------YIPVCGSNGDTYQNECFLRRAACK---------HQKEIT 30 Q26057_2/1-45 76.3% 32.2% RCPS-------------ICPLN-------------------YKPVCGSDLKTYGNSCQLNAAIC----------RNPSLK 31 E1360384/1-44 74.6% 28.8% PC---------------NCFRN-------------------FNPVCGTDGKTYGNLCMLGCAAET---------KVPGLK 32 Q22452_1/1-45 76.3% 28.8% VCP--------------SCTDE-------------------FKEVCGSDGKTYSNECRLQNAACM---------AQKNIF 33 E254691/1-43 72.9% 30.5% RC---------------ACPKI-------------------YYPVCGTDGETYPNLCVLECHMR----------MNPGLQ 34 E1360384_1/1-44 74.6% 30.5% PC---------------ECPRA-------------------LHRVCGSDGNTYSNPCMLNCAKHE---------GNPDLV 35 Q92033/1-47 79.7% 30.5% PGEKA------------ACTLE-------------------YAPVCGSDGITYDNKCLFCVAKRD---------SGNTIT 36 Q95011/1-43 72.9% 28.8% DC---------------DCPSV-------------------IRPVCGTDNVTYNNLCFLRCVQR----------TNEDLL 37 IOVO_EUDEL/1-48 81.4% 33.9% DCSGYPKP---------ACTLE-------------------FFPLCGSDNQTYSNKCAFCNAAV-----------EKNVT 38 AGRI_CHICK_1/1- 78.0% 22.0% ECQQ-------------VCQGR-------------------YDPVCGSDNRTYGNPCELNAMACV---------LKREIR 39 AGRI_CHICK_2/1- 74.6% 28.6% QC---------------VCPRCEQQP---------------LAQVCGTDGLTYDNRCELRAASCQ---------QQKSIE 40 O00468_2/1-46 78.0% 25.4% VCPS-------------ECVAL-------------------AQPVCGSDGHTYPSECMLHVHACT---------HQISLH 41 O75770/1-56 94.9% 35.6% NCDDFKKGE---RDGDFICPDY-------------------YEAVCGTDGKTYDNRCALCAENAK---------TGSQIG 42 AGRI_CHICK_3/1- 78.0% 27.1% VCPT-------------ECVPS-------------------SQPVCGTDGNTYGSECELHVRACT---------QQKNIL 43 E254691_4/1-43 72.9% 25.4% ECD---------------GDE--------------------YKPVCGSDDITYDNNCRLECASIS---------SSPGVE 44 O00468_3/1-47 78.0% 26.7% VCDF-------------SCQSVP------------------GSPVCGSDGVTYSTECELKKARCE---------SQRGLY 45 AGRI_DISOM/1-48 79.7% 28.3% ECPPS------------ICPKNK------------------QFKVCGSDGVTYANECQLKTIACR---------QGSVIN 46 Q90844/1-48 78.0% 27.9% VCAP-------------DCSNITW-----------------KGPVCGLDGKTYRNECALLKARCK---------EQPELE 47 FRP_HUMAN/1-46 78.0% 27.1% LCIE-------------QCKPH-------------------KRPVCGSNGKTYLNHCELHRDACL---------TGSKIQ 48 G3764055/1-44 74.6% 23.7% DCS---------------GLPA-------------------RLQVCGSDGATYRDECELRAARCR---------GHPDLS 49 AGRI_RAT_4/1-48 74.6% 25.4% QC---------------VCPRCEHPP---------------PGPVCGSDGVTYLSACELREAACQ---------QQVQIE 50 E1360384_4/1-44 74.6% 27.1% TC---------------QCDDT-------------------FQPVCGDDEITYRNLCHLECATFT---------TSPGVE 51 Q22452_2/1-46 78.0% 23.7% ECPN-------------RCEDV-------------------MRPVCATNGETFDNECEMKKKSCE---------TKSMIK 52 LDTI_HIRME/1-38 64.4% 32.2% VC---------------ACPKI-------------------LKPVCGSDGRTYANSCIARC---------------NGVS 53 AGRI_RAT_5/1-50 74.6% 23.1% QC---------------ICPTLTCPE-------------ANSTKVCGSDGVTYGNECQLKAIACR---------QRLDIS 54 Q95011_1/1-47 78.0% 28.3% NCSM-------------ECDNS-------------------YDPLCGTNGVTFTNACSLQKEICES--------ANSTIE 55 IBD3_HIRME/1-38 64.4% 25.4% EC---------------VCTKE-------------------LHRVCGSDGVTYDNECLATCHGA---------------S 56 Q62288/1-43 72.9% 22.0% PCPV--------------AQ---------------------SAMVCGSDGHTYTSKCKLEFHACS---------TGKSLN 57 AGRI_CHICK_5/1- 74.6% 27.1% PE---------------NCPSK-------------------REPVCGDDGVTYASECVMGRTGAI---------RGLEIQ 58 Q13086_1/1-43 72.9% 22.0% DCS---------------GYS--------------------FNPVCASDGSSYNNPCFVREASCI---------KQEQID 59 QR1_COTJA/1-49 74.6% 21.9% ACPS---------------TKD-------------------YKRVCGTDNKTYDGTCQLFGTKCQLEGTK----MGRQLH 60 Q22452_3/1-47 79.7% 20.3% QCPNY------------GDSVE-------------------SSPVCSSHGVDYQSSCHLRHHACE---------SKTNIT 61 Q92743/1-45 69.5% 23.8% VCAS-------------------------------------SEPVCGSDANTYANLCQLRAASRRSERL-----HRPPVI 62 Q95011_2/1-45 76.3% 22.0% ACQM-------------PCTDD-------------------KHPICASDFSTYENLCQFRKQKCL----------DSELE 63 AGRI_RAT_7/1-47 78.0% 21.7% LCPT-------------TCFGA------------------PDGTVCGSDGVDYPSECQLLSHACA---------SQEHIF 64 O75705/1-46 76.3% 26.7% TCK--------------QCPVV------------------YPSPVCGSDGHTYSFQCKLEYQACV---------LGKQIS 65 AGRI_CHICK_6/1- 74.6% 21.5% HC---------------ECPSPLCSEAN-------------MTKVCGSDGVTYGDQCQLKTIACR---------QGQLIT 66 Q16270/1-47 72.9% 20.6% VC---------------VCKSR--------------------YPVCGSDGTTYPSGCQLRAASQRAE-----SRGEKAIT 67 Q22452_4/1-46 78.0% 27.1% DCPS-------------YEMEE-------------------GKEVCGTDGVTYSSECHMKKSACH---------QSKFVM 68 SPRC_CHICK/1-56 81.4% 22.4% VCQDPS-----------SCPAHSGV----------------FEKVCGTDNKTYDSSCHFFATKCTLEGTK----KGHKLH 69 AGRI_CHICK_7/1- 72.9% 28.8% SCSGVA-----------------------------------ESIVCGSDGKDYRSECDLNKHACD---------KQENVF 70 FSA_MOUSE_1/1-4 76.3% 22.0% ICPE------------PSSS---------------------EQYLCGNDGVTYSSACHLRKATCL---------LGRSIG 71 AGRI_CHICK_8/1- 79.7% 23.7% SCDR------------ITCDGT-------------------YRPVCARDSRTYSNDCERQKAECH---------QKAAIP 72 D1022580/1-62 98.3% 34.9% VCASRASGTAPEGTGLCVCAQR--------------------GAVCGSDGRSYSSICALRLRARHAPRA-----HHGHLH 73 Q92563/1-46 76.3% 23.3% ICK--------------PCHMAQ------------------LASVCGSDGHTYSSVCKLEQQACL---------SSKQLA 74 Q22452_5/1-49 78.0% 22.6% VCSY-------------NCPANPPL----------------SARICGENGVLYPSLCHLQLASCQ---------KGAPIS 75 Q95011_3/1-52 78.0% 27.7% ECNN-------------ACPKE-------------------YSPVCASNGQNIVNECELDKIRCLVENN---VTTGDKLV 76 FSA_MOUSE_2/1-5 83.1% 27.9% RCSLCDE----------LCPDSKS-----------------DEPVCASDNATYASECAMKEAACS---------SGVLLE 77 Q95011_4/1-47 72.9% 20.6% NCDI--------------SV---------------------FSPVCDTEGVTHANMCLMDQNACIQMKK-----NKKTIQ 78 Q22452_6/1-49 78.0% 19.4% ECKA-------------RCRVV-------------------TDVVCGSDHVSYSSFCHLSVRSCVLAK------NGVRLR 79 O75770_1/1-55 93.2% 22.0% ECAEYREQM---KNGRLSCTRE-------------------SDPVRDADGKSYNNQCTMCKAKL----------EREAER 80 Q95011_5/1-50 79.7% 17.7% DCPKP------------NCPTD-------------------GQPVCDSAGNLHGNLCEFTYSRCIAAS------KGHQIH 81 O75770_2/1-56 94.9% 27.1% TCDEFRSQM---KNGKLICTRE-------------------SDPVRGPDGKTHGNKCTMCKEKLE---------REAAEK 82 Q95011_6/1-49 76.3% 21.0% -CDT-------------NCPSD-------------------FSPVCDSKGSTHQNICHFGVKRCIAERT-----FGDVLT 83 Q95011_7/1-50 78.0% 22.2% ICPR-------------TCSRD-------------------VKPVCDEANNTHQNLCHFQQYNCNMRKL-----GIRSPY 84 Q95011_8/1-51 79.7% 20.6% ACSIK------------ECDKS-------------------WDPVCDTRNRTHKNVCQFKFFACKINKI-----DGSVID 85 Q95011_9/1-54 81.4% 18.5% ECCA-----------LASCPKT-------------------GQPVCDSRGRTHDSLCHFHNSKCIFDKI---HTQNTTLT 86 O75770_3/1-56 94.9% 23.7% TCDEFRRLL---QNGKLFCTRE-------------------NDPVRGPDGKTHGNKCAMCKAVFQ---------KENEER 87 O75770_4/1-56 94.9% 22.0% FCKEYEKQV---RNGRLFCTRE-------------------SDPVRGPDGRMHGNKCALCAEIFK---------RRFSEE consensus/100% .t..........................................hps.t...h...C.h..................... consensus/90% .C................s.......................t.lCusss.sa.s.C.ht...h...........t..l. consensus/80% .C................Cs......................t.VCGo-s.TYss.C.hphtth..........tt.tlt consensus/70% tC................Cst....................hpPVCGoDGhTYsstCthptttpp.........pttplp cov pid 81 ] 87 1 IOV7_CHICK/1-59 100.0% 100.0% KEYDGEC 2 IOV7_CHICK_1/1- 100.0% 59.3% KKHDGKC 3 IOVO_CHICK/1-59 100.0% 45.8% KEHDGEC 4 O13274/1-49 83.1% 32.2% VGHRGAC 5 IOVO_COTJA/1-50 84.7% 33.9% LNHFGKC 6 257598/1-51 86.4% 35.6% IVKDGEC 7 IPST_ANGAN/1-51 86.4% 33.9% ITKDDRC 8 IAC2_HUMAN/1-50 84.7% 42.4% IIRNGPC 9 IOVO_MELGA/1-59 100.0% 47.5% KKHDGEC 10 IPS1_RAT/1-49 83.1% 35.6% IQRRGTC 11 IPSG_PANLE/1-54 91.5% 44.1% KLYDDKC 12 IPSG_MELME/1-54 91.5% 42.4% ILQDNNC 13 G671745/1-49 83.1% 32.2% IQKSGPC 14 IOV7_CHICK_3/1- 100.0% 42.4% KRKNGRC 15 IAC1_BOVIN/1-49 83.1% 30.5% FNHFGEC 16 Q22452/1-46 78.0% 30.5% VWKRGNC 17 G1911820/1-51 86.4% 35.6% IKRRGTC 18 IAC2_BOVIN/1-52 88.1% 25.4% LKHRGKC 19 IELA_ANESU/1-46 78.0% 27.1% LVHKGRC 20 IPSG_CANFA/1-49 83.1% 27.1% LAKHGEC 21 IOV7_CHICK_5/1- 88.1% 23.7% LVSMAAC 22 AGRI_RAT/1-47 79.7% 30.5% LLRQGPC 23 O35679/1-51 86.4% 32.2% IMKDGQC 24 Q26057/1-47 78.0% 28.3% IAYKGAC 25 IACS_PIG/1-52 88.1% 27.1% FGHWGHC 26 Q26057_1/1-47 78.0% 33.3% VDYQGEC 27 O00468/1-46 78.0% 25.4% VARKGPC 28 IOV7_CHICK_6/1- 98.3% 47.5% KKHDGRC 29 Q13086/1-46 78.0% 27.1% VIARGPC 30 Q26057_2/1-45 76.3% 32.2% KLYDGPC 31 E1360384/1-44 74.6% 28.8% LLHNGRC 32 Q22452_1/1-45 76.3% 28.8% VKYNSAC 33 E254691/1-43 72.9% 30.5% LHHYGHC 34 E1360384_1/1-44 74.6% 30.5% QVHKGPC 35 Q92033/1-47 79.7% 30.5% IEREGPC 36 Q95011/1-43 72.9% 28.8% FFYNGTC 37 IOVO_EUDEL/1-48 81.4% 33.9% LNHIGEC 38 AGRI_CHICK_1/1- 78.0% 22.0% VKHKGPC 39 AGRI_CHICK_2/1- 74.6% 28.6% VAKMGPC 40 O00468_2/1-46 78.0% 25.4% VASAGPC 41 O75770/1-56 94.9% 35.6% VKSEGEC 42 AGRI_CHICK_3/1- 78.0% 27.1% VAAQGDC 43 E254691_4/1-43 72.9% 25.4% LKHEGPC 44 O00468_3/1-47 78.0% 26.7% VAAQGAC 45 AGRI_DISOM/1-48 79.7% 28.3% ILHQGPC 46 Q90844/1-48 78.0% 27.9% VQYQGKC 47 FRP_HUMAN/1-46 78.0% 27.1% VDYDGHC 48 G3764055/1-44 74.6% 23.7% VMYRGRC 49 AGRI_RAT_4/1-48 74.6% 25.4% EAHAGPC 50 E1360384_4/1-44 74.6% 27.1% VKHEGEC 51 Q22452_2/1-46 78.0% 23.7% VKHQGTC 52 LDTI_HIRME/1-38 64.4% 32.2% IKSEGSC 53 AGRI_RAT_5/1-50 74.6% 23.1% TQSLGPC 54 Q95011_1/1-47 78.0% 28.3% VAYTGMC 55 IBD3_HIRME/1-38 64.4% 25.4% VAHDHAC 56 Q62288/1-43 72.9% 22.0% SLCDGPC 57 AGRI_CHICK_5/1- 74.6% 27.1% KVRSGQC 58 Q13086_1/1-43 72.9% 22.0% IRHLGHC 59 QR1_COTJA/1-49 74.6% 21.9% LDYMGAC 60 Q22452_3/1-47 79.7% 20.3% VKFFGRC 61 Q92743/1-45 69.5% 23.8% VLQRGAC 62 Q95011_2/1-45 76.3% 22.0% VLFKGKC 63 AGRI_RAT_7/1-47 78.0% 21.7% KKFNGPC 64 O75705/1-46 76.3% 26.7% VKCEGHC 65 AGRI_CHICK_6/1- 74.6% 21.5% VKHVGQC 66 Q16270/1-47 72.9% 20.6% QVSKGTC 67 Q22452_4/1-46 78.0% 27.1% TAFEGKC 68 SPRC_CHICK/1-56 81.4% 22.4% LDYIGPC 69 AGRI_CHICK_7/1- 72.9% 28.8% KKFDGAC 70 FSA_MOUSE_1/1-4 76.3% 22.0% LAYEGKC 71 AGRI_CHICK_8/1- 79.7% 23.7% VKHSGPC 72 D1022580/1-62 98.3% 34.9% KARDGPC 73 Q92563/1-46 76.3% 23.3% VRCEGPC 74 Q22452_5/1-49 78.0% 22.6% EMPPSHC 75 Q95011_3/1-52 78.0% 27.7% KDYDGEC 76 FSA_MOUSE_2/1-5 83.1% 27.9% VKHSGSC 77 Q95011_4/1-47 72.9% 20.6% VSYQGQC 78 Q22452_6/1-49 78.0% 19.4% VATKGPC 79 O75770_1/1-55 93.2% 22.0% KNEYSRS 80 Q95011_5/1-50 79.7% 17.7% IATEENC 81 O75770_2/1-56 94.9% 27.1% KRKRMKT 82 Q95011_6/1-49 76.3% 21.0% IDKFEVC 83 Q95011_7/1-50 78.0% 22.2% LRYLRPC 84 Q95011_8/1-51 79.7% 20.6% IAHSGAC 85 Q95011_9/1-54 81.4% 18.5% LDYQGKC 86 O75770_3/1-56 94.9% 23.7% KRKEEED 87 O75770_4/1-56 94.9% 22.0% NSKTDQN consensus/100% ......s consensus/90% h...s.C consensus/80% h.htG.C consensus/70% httpGtC