Family alignment for the KNOX1 domain, displayed in 

                                                             cov    pid  1 [        .         .         .         .       ] 48
 1 29760.GSVIVG00015017001_from_108_to_152                100.0% 100.0%    EAIKAKIIAHPQYSNLLEAYMDCQK--VGAPPEV-VERLAAVRQEFES   
 2 39947.LOC_Os03g51690.2_from_102_to_146                 100.0%  73.3%    EAIKAKIISHPHYSSLLAAYLDCQK--VGAPPEV-AARLTAVAQDLEL   
 3 59689.fgenesh2_kg.6__2861__AT4G08150.1_from_128_to_172 100.0%  73.3%    EAMKAKIIAHPHYSTLLQAYLDCQK--IGAPPEV-VDRITAARQDFEA   
 4 29760.GSVIVG00025931001_from_77_to_121                 100.0%  57.8%    CSMKAKIMAHPHYPRLLAAYVNCQK--VGAPPEV-VARLEEACASEEA   
 5 15368.BRADI2G11540.1_from_36_to_80                     100.0%  48.9%    ELMKAQIASHPRYPTLLSAYIECRK--VGAPPEV-ASLLEEIGRERRA   
 6 39946.BGIOSIBCE023580_from_89_to_133                   100.0%  68.9%    ESIKAKIMAHPQYSALLAAYLDCQK--VGAPPEV-LERLTATAAKLDA   
 7 3702.AT1G70510.1-P_from_67_to_111                      100.0%  46.7%    SVIKSKIASHPLYPRLLQTYIDCQK--VGAPMEI-ACILEEIQRENHV   
 8 3694.gw1.VIII.416.1_from_67_to_111                     100.0%  53.3%    SLVKAKIASHPSYPRLLEAYIDCQK--VGAPPQI-ARFLDEIRRENDL   
 9 29760.GSVIVG00022604001_from_49_to_93                  100.0%  44.4%    DLIKSQIVNHPRYPNLVSAYIECRK--VGAPPEM-ASLLEEIGRESQP   
10 39946.BGIOSIBCE012450_from_60_to_104                   100.0%  64.4%    DAIKAKIMSHPLYPALLRAFIDCQK--VGAPPEV-VGRLSALAGELDS   
11 29760.GSVIVG00016046001_from_78_to_122                 100.0%  55.6%    SAIRAKIATHPLYPKLLHAYIECQK--VGAPPEV-AYLLEEIRRGSEL   
12 3702.AT1G23380.2-P_from_83_to_129                      100.0%  51.1%    TVIKAKIACHPSYPRLLQAYIDCQKKQVGAPPEI-ACLLEEIQRESDV   
13 3694.gw1.XII.1352.1_from_9_to_53                       100.0%  55.6%    CAIRAKIASHPLYPKLLEAYIDCQK--VGAPPEM-AYLLDEIRLVNDV   
14 4558.Sb01g009460.1_from_83_to_127                      100.0%  53.3%    DPIKAKIVSHPRYHRLLAAFLDCHK--VGCPPEA-AEEIAAAAREREA   
15 39947.LOC_Os03g56140.1_from_79_to_123                  100.0%  53.3%    AAMKAEIMSHPQYSALLAAYLGCKK--VGAPPDV-LTKLTAVPAAQQQ   
16 3694.gw1.133.237.1_from_3_to_47                        100.0%  46.7%    DAIKTQIANHPRYPDLVSAHLECQK--VGAPPEM-VSLLEAIGRGNYK   
17 39946.BGIOSIBCE012453_from_67_to_111                   100.0%  53.3%    AMIKAKIMSHPLYPSLLRAFVDCKK--VGAPPEV-VGRLSSLAVVTDE   
18 59689.fgenesh2_kg.2__183__AT1G62990.1_from_27_to_71    100.0%  26.7%    RQMKGEIATHPMYEQLLAAHVACLR--VATPIDQ-LPIIEAQLSQSHH   
19 3694.grail3.0013043901_from_156_to_200                 100.0%  31.1%    AKCKADILAHPLYDQLLSAHVACLR--IATPVDQ-LPRIDAQLAQSQQ   
20 3702.AT4G32040.1-P_from_116_to_160                     100.0%  31.1%    ASYKAAILRHPMYEQLLAAHVACLR--VATPVDQ-IPRIDAQLSQLHT   
21 4558.Sb04g005620.1_from_45_to_89                       100.0%  37.8%    EREKAAIAAHPLYERLLEAHVACLR--VATPVDQ-LPRIDAQIAARPP   
22 39946.BGIOSIBCE005884_from_40_to_84                    100.0%  35.6%    EREKAAVAAHPLYERLLEAHVACLR--VATPVAQ-LPRLDEADSASAR   
23 4558.Sb01g048970.1_from_61_to_105                      100.0%  22.2%    QLLKGEIAVHPLCEQLVAAHVGCLR--VATPIDH-LPLIDAQLAQSSG   
24 3218.JGI59235_from_267_to_311                          100.0%  31.1%    ARDKFLIVAHPLYPDLLNAHASCLR--VGTPVDQ-LPHIEAQLTQARH   
25 3218.JGI129619_from_19_to_63                           100.0%  24.4%    IRNRALIVNHPLYPEMLMNHAACLR--VGTPVDQ-LPSIEAQLAQAPN   
26 70448.Q01AF4_from_67_to_108                             93.3%  35.6%    EEMTLAIRAHPMYARLVEAYYECRK--IGAHGDA-AVALE---REKDA   
27 3218.JGI145866_from_160_to_204                         100.0%  28.9%    PELRAAIIDHPFYPEMVLAHVRVFK--IGAPRRL-INKLDDLTRKFQQ   
28 436017.A4RWJ2_from_6_to_47                              93.3%  35.6%    EEMTLAVRAHPMYPRLVEAYYECRQ--IGAEGDV-LEALD---RERDA   
29 3694.fgenesh4_pg.C_LG_XII000013_from_24_to_67           95.6%  37.0%    EALKKRISSHPLYGLLVQTHIDCLK--VGTVGDVD--RIPRVRPNLSC   
30 29760.GSVIVG00017886001_from_87_to_132                 100.0%  26.1%    KMLKRRISCHPLYGFLVEAHLDCLK--VSLSLSLCAHKSDEKKRHNQP   
31 3702.AT1G14760.1-P_from_31_to_75                        97.8%  23.9%    EILKKRISSHPLYGLLLHSHLNCLK--VCS-GDFDSPEIMNTADDLAL   
   consensus/100%                                                          ...p..l..HP.h..hl.sahts.p..ls...t...............   
   consensus/90%                                                           t..+ttIhsHP.Y.tLltuahtC.+..luss.c..h.hltt..tt.t.   
   consensus/80%                                                           t.hKstIhsHPhYspLltAaltC.+..VusPs-..h.hlpt.htt.p.   
   consensus/70%                                                           phhKupIhsHPhYspLLtAalsC.K..VGsPs-h.hshlpthhtptp.