cov pid 1 [ . . . . : . . . 80 1 FA12_BOVIN/1-8 100.0% 100.0% ASCYDDRDRGLSYRGMAGTTLSGAPCQSWAS--EATYWNVTAEQVLNW---GLGDHAFCR---NPDN--DTRPWCFI-WK 2 HGFA_HUMAN/1-8 97.6% 44.3% ERCFLG--NGTGYRGVASTSASGLSCLAWNS--DLLYQELHVDSVGAAALLGLGPHAYCR---NPDN--DERPWCYV-VK 3 URT1_DESRO/1-8 97.6% 29.5% ATCYEG--QGVTYRGTWSTAESRVECINWNS--SLLTRRTYNGRMPDAFNLGLGNHNYCR---NPNG--APKPWCYV-IK 4 UROT_BOVIN/2-0 97.6% 39.8% GDCYTG--NGLAYRGTRSHTKSGASCLPWNS--VFLTSKIYTAWKSNAPALGLGKHNHCR---NPDG--DAQPWCHV-WK 5 Q14520/1-87 97.6% 34.8% DDCYVG--DGYSYRGKMNRTVNQHACLYWNS--HLLLQENYNMFMEDAETHGIGEHNFCR---NPDA--DEKPWCFI-KV 6 UROK_BOVIN/1-8 96.5% 36.0% KTCYQG--NGHSYRGKANRDLSGRPCLAWDSP-TVLLKM-YHAHRSDAIQLGLGKHNYCR---NPDN--QRRPWCYV-QI 7 UROK_CHICK/1-8 92.9% 28.9% SICYSG--NGEDYRGMAE----DPGCLYWDHP-SVIRWGDYHADLKNALQLGLGKHNYCR---NPNG--RSRPWCYT-KR 8 HGFL_HUMAN/2-0 92.9% 29.5% AACVWC--NGEEYRGAVDRTESGRECQRWDLQHPHQHPF-EPGKFLDQG----LDDNYCR---NPDG--SERPWCYT--T 9 HGF_HUMAN/2-0 92.9% 30.7% VECMTC--NGESYRGLMDHTESGKICQRWDHQTPHRHKF-LPERYPDKG----FDDNYCR---NPDG--QPRPWCYT--L 10 PLMN_BOVIN/1-8 92.9% 28.4% DKCMHC--SGENYEGKIAKTMSGRDCQAWDSQSPHAHGY-IPSKFPNKN----LKMNYCR---NPDG--EPRPWCFT--T 11 HGFL_HUMAN/3-0 92.9% 31.5% VSCFRG--KGEGYRGTANTTTAGVPCQRWDAQIPHQHRF-TPEKYACKD----LRENFCR---NPDG--SEAPWCFT--L 12 HGF_HUMAN/3-0 92.9% 29.2% TECIQG--QGEGYRGTVNTIWNGIPCQRWDSQYPHEHDM-TPENFKCKD----LRENYCR---NPDG--SESPWCFT--T 13 PLMN_BOVIN/3-0 92.9% 26.1% YQCLKG--TGKNYGGTVAVTESGHTCQRWSEQTPHKHNR-TPENFPCKN----LEENYCR---NPNG--EKAPWCYT--T 14 PLMN_PETMA/1-7 78.8% 28.4% TACVKG--TGEGYRGTAALTVSGKACQAWASQTPGDVYS-------CQG----LVSNYCR---NPDG--EKLPWCYT--- 15 PLMN_BOVIN/5-0 94.1% 32.6% ADCMIG--TGKSYRGKKATTVAGVPCQEWAAQEPHQHSIFTPETNPQSG----LERNYCR---NPDGD-VNGPWCYT--M 16 PLMN_BOVIN/4-0 92.9% 36.4% QDCYHG--NGQSYRGTSSTTITGRKCQSWSSMTPHRHLK-TPENYPNAG----LTMNYCR---NPDA--DKSPWCYT--T 17 THRB_BOVIN/1-8 92.9% 28.1% GNCAEG--VGMNYRGNVSVTRSGIECQLWRSRYPHKPEI-NSTTHPGAD----LRENFCR---NPDGS-ITGPWCYT--T 18 Q91001/1-81 91.8% 27.3% GNCAAN--LGQNYRGTINYTKSGIECQVWTSKYPHIPKF-NASIYPD------LTENYCR---NPDNN-SEGPWCYT--R 19 HGF_HUMAN/1-83 92.9% 24.7% RNCIIG--KGRSYKGTVSITKSGIKCQPWSSMIPHEHSF-LPSSYRGKD----LQENYCR---NPRGE-EGGPWCFT--S 20 Q01973/1-83 92.9% 32.6% HKCYNS--TGVDYRGTVSVTKSGRQCQPWNSQYPHTHTF-TALRFPELN----GGHSYCR---NPGNQ-KEAPWCFT--L 21 Q01974/1-83 94.1% 31.8% HQCYNG--SGMDYRGTASTTKSGHQCQPWALQHPHSHHL-SSTDFPEL----GGGHAYCR---NPGGQ-MEGPWCFT--Q 22 Q17576/1-80 89.4% 24.7% HWCYVN--SGTQYEGTVAQTSSGKQCAPWIDSTSRDFNV---HRFPELM----NSKNYCR---NPGGK-KSRPWCYS--K 23 Q07153/1-83 92.9% 27.0% RMCYNN--NGRFYQGSVNVTASGISCQRWSEQAPHFHRR-LPEIFPELA----NSDNFCR---NPGGE-SERPWCYT--M 24 O02001/1-83 92.9% 21.3% YDCRNG--NGRFYMGTMNVSKSGIPCQRWDTQYPHKHFQ-PPLVFHQLL----EGENYCR---NAGGE-EPHPWCYT--V 25 Q25101/1-85 95.3% 30.3% SECFDI-ENPESYQGAISRTLGGETCQSWDLQTPHKHKY-TSSNYPNSG---LAGNNYCR---NPDQD-WRGPWCYT--T 26 PLMN_BOVIN/2-0 91.8% 27.3% LECKTG--NGQTYRGTTAETKSGVTCQKWSATSPHVPKF-SPEKFPLAG----LEENYCR---NPDND-ENGPWCYT--T 27 PLMN_ERIEU/2-0 91.8% 26.1% SECKVG--NGKYYRGTVSKTKTGLTCQKWSAETPHKPRF-SPDENPSEG----LDQNYCR---NPDND-PKGPWCYT--M 28 HGFL_HUMAN/1-8 91.8% 27.3% RTCIMN--NGVGYRGTMATTVGGLPCQAWSHKFPNDHKY-TPTLRNG------LEENFCR---NPDGD-PGGPWCYT--T 29 Q90865/1-81 91.8% 25.0% RECIVA--NGTSYRGTRDTTERGLRCQHWQATTPHDHRF-LPSLRNG------LEENYCR---NPDRD-KRGPWCYT--V 30 Q91691/1-81 91.8% 25.0% RDCVAG--NGNTYRGTVSKTKSGRTCQRWRLKFPHDHKF-SPIHWPE------LEENYCR---NPDSD-PEGPWCYT--T 31 HGFL_HUMAN/4-0 92.9% 29.2% QDCYHG--AGEQYRGTVSKTRKGVQCQRWSAETPHKPQF-TFTSEPHAQ----LEENFCR---NPDGD-SHGPWCYT--M 32 Q91691/4-0 90.6% 23.3% PDCYHG--NGELYSGRVSKTRKGIKCRRWEEKRNDLELS---LDQPYLVP---LEENYCR---NPDRD-SHGPWCYT--M 33 HGF_HUMAN/4-0 91.8% 25.6% QDCYRG--NGKNYMGNLSQTRSGLTCSMWDKNMEDLHRH--IFWEPDASK---LNENYCR---NPDDD-AHGPWCYT--G 34 THRB_BOVIN/2-0 92.9% 28.1% ETCVPD--RGREYRGRLAVTTSGSRCLAWSSEQAKALSK-DQDFNPAVP----LAENFCR---NPDGD-EEGAWCYV--A 35 Q91001/2-0 91.8% 28.1% QPCESE--KGMLYTGTLSVTVSGARCLPWASEKAKALLQ-DKTINPEVK----LLENYCR---NPDAD-DEGVWCVI--D 36 Q90504/1-81 90.6% 25.8% VPCVRR--EGRDYRGDLNITWTGKPCLPWRGSYSNFLPS-QFTTAG-------LTSNYCR---NPDGD-SEGVWCYT--K 37 Q24488/1-78 87.1% 25.8% ENCYWE--DGSTYRGVANVSASGKPCLRWSWLMKEISDF------PEL-----IGQNYCR---NPGSV-ENSPWCFV--D 38 O00318/1-81 88.2% 22.0% GGCFWD--NGHLYREDQTSPAPGLRCLNWLDAQSGLASA------PVSG---AGNHSYCR---NPDED-PRGPWCYVS-G 39 Q17797/1-80 84.7% 19.4% RECIARD---KEYSGTANRTSDGKMCLMWNDPTVLFRRE------RDLE---ILNHNFCRFVNDADGKKSATPVCYT--- 40 O08762/1-82 84.7% 23.3% RRCGAG-------ESWGNATNLGVPCLHWDEVPPFLERS-PPASWAELR---GQPHNFCR---SPDG--SGRPWCFYR-N consensus/100% ..C...........t..t....t..C..W...........................saCR...sstt.....shCh.... consensus/90% ..Ch.t..tG..YpG.hs.s.tGh.C..Wt...s............t......htpsaCR...NPss...ttPWCas... consensus/80% tpCh.s..pG.tYcGphshT.sGh.C..Wst..st.h.........t......htcNaCR...NPss..tttPWCas..h consensus/70% tpChts..sGpsYRGshshThuGhtC..Wspt.sphhph...t.hsph.....hpcNYCR...NPDu..pptPWCYT..h cov pid 81 . ] 98 1 FA12_BOVIN/1-8 100.0% 100.0% GDRLS-WNYCRLA-PCQA 2 HGFA_HUMAN/1-8 97.6% 44.3% DSALS-WEYCRLE-ACES 3 URT1_DESRO/1-8 97.6% 29.5% AGKFT-SESCSVP-VCSK 4 UROT_BOVIN/2-0 97.6% 39.8% DRQLT-WEYCDVP-QCVT 5 Q14520/1-87 97.6% 34.8% TNDKVKWEYCDVS-ACSA 6 UROK_BOVIN/1-8 96.5% 36.0% GLKQF-VQFCMVQ-DCSV 7 UROK_CHICK/1-8 92.9% 28.9% RYSIQ-ETPCSTIEKCER 8 HGFL_HUMAN/2-0 92.9% 29.5% DPQIE-REFCDLP-RCGS 9 HGF_HUMAN/2-0 92.9% 30.7% DPHTR-WEYCAIK-TCAD 10 PLMN_BOVIN/1-8 92.9% 28.4% DPQKR-WEFCDIP-RCTT 11 HGFL_HUMAN/3-0 92.9% 31.5% RPGMR-AAFCYQIRRCTD 12 HGF_HUMAN/3-0 92.9% 29.2% DPNIR-VGYCSQIPNCDM 13 PLMN_BOVIN/3-0 92.9% 26.1% NSEVR-WEYCTIP-SCES 14 PLMN_PETMA/1-7 78.8% 28.4% ------TEYCNVP-SCTG 15 PLMN_BOVIN/5-0 94.1% 32.6% NPRKP-FDYCDVP-QCES 16 PLMN_BOVIN/4-0 92.9% 36.4% DPRVR-WEFCNLK-KCSE 17 THRB_BOVIN/1-8 92.9% 28.1% SPTLR-REECSVP-VCGQ 18 Q91001/1-81 91.8% 27.3% DPTVE-REECPIP-VCGQ 19 HGF_HUMAN/1-83 92.9% 24.7% NPEVR-YEVCDIP-QCSE 20 Q01973/1-83 92.9% 32.6% DENFK-SDLCDIP-ACDS 21 Q01974/1-83 94.1% 31.8% NKNVR-MELCDVP-SCSP 22 Q17576/1-80 89.4% 24.7% PMGQE--EYCDVP-QCPS 23 Q07153/1-83 92.9% 27.0% DRDIR-WEFCNVP-QCIN 24 O02001/1-83 92.9% 21.3% DESVR-WQHCDIP-MCPD 25 Q25101/1-85 95.3% 30.3% NEFMR-WDYCDIP-ICSN 26 PLMN_BOVIN/2-0 91.8% 27.3% DPDKR-YDYCDIP-ECE- 27 PLMN_ERIEU/2-0 91.8% 26.1% DPEVR-YEYCEII-QCE- 28 HGFL_HUMAN/1-8 91.8% 27.3% DPAVR-FQSCGIK-SCRE 29 Q90865/1-81 91.8% 25.0% DPNVR-HQSCGIK-KCED 30 Q91691/1-81 91.8% 25.0% DKNIR-HQYCGIK-KCED 31 HGFL_HUMAN/4-0 92.9% 29.2% DPRTP-FDYCALR-RCAD 32 Q91691/4-0 90.6% 23.3% DPNTP-FDYCAIK-PCEG 33 HGF_HUMAN/4-0 91.8% 25.6% NPLIP-WDYCPIS-RCEG 34 THRB_BOVIN/2-0 92.9% 28.1% DQPGD-FEYCDLN-YCEE 35 Q91001/2-0 91.8% 28.1% EPPY--FEYCDLH-YCDS 36 Q90504/1-81 90.6% 25.8% GVEGTDVDYCQLN-YCES 37 Q24488/1-78 87.1% 25.8% SSRERIIELCDIP-KCAD 38 O00318/1-81 88.2% 22.0% EAGVPEKRPCEDL-RCPE 39 Q17797/1-80 84.7% 19.4% KPNEL--SQCYIP-PCPE 40 O08762/1-82 84.7% 23.3% AQGKVDWGYC----DCGQ consensus/100% .......t.C.....C.. consensus/90% t......p.C.h...C.. consensus/80% s.th..hphCtl...Ctt consensus/70% s.php.h-aCsl..tCtp