cov    pid  1 [        .         .         .         .         :         . ] 62
 1 9796.ENSECAP00000007042_from_4001_to_4044 100.0% 100.0%    SQPTDAALSEASPIQSLNRALRETLLARPAAVQPTV---------------PEQC---QGAP   
 2 9361.ENSDNOP00000014469_from_3997_to_4041 100.0%  75.6%    SKLTDAATSEASPIQSLNRALKETLLVRPAAGQAMV---------------PEQC--QGVAP   
 3 10141.ENSCPOP00000009878e_from_590_to_635 100.0%  21.7%    KRSQDGLVARPSPLHCLESSLRGILPAKPLRFTCLS---------------SDGE-DLRPEP   
 4 9986.ENSOCUP00000018350_from_596_to_639   100.0%  27.3%    RWLQDGAPTRPSPLHCLETSLREILPVRPLRFACLA---------------LSSS---DGED   
 5 10116.ENSRNOP00000040855c_from_588_to_631 100.0%  20.5%    QWPQEETATMPSPLHRLENSLKGILPMRPLRFTCVT---------------GPGP---SPSP   
 6 9615.ENSCAFP00000006644b_from_613_to_656  100.0%  22.7%    RWLQDGAAMKPSPLHCLENSLKGILPGRPLRFACLA---------------GPSP---SPSP   
 7 9598.ENSPTRP00000033989_from_599_to_642   100.0%  22.7%    RWLPEGSAPKPSPLHCLESALRGILPVRPLRFACVA---------------GPSP---SPSP   
 8 6945.ISCW024217-PA_from_77_to_120         100.0%  15.9%    QTEQPYTPAETSATERLIASLKTIKPKQPVTPAHTA---------------ASEQ---PPSP   
 9 10141.ENSCPOP00000009878d_from_370_to_414  97.7%  13.0%    GPEAQACRVSSSPLEALEACLKGISTSALS-PPQPP---------------ATSW-SRTLQP   
10 10116.ENSRNOP00000040855a_from_369_to_413  97.7%  13.0%    GPMALASRTSSSPLEALEACLKGIPPGGSS-PLQSL---------------AISW-SRSPQP   
11 9544.ENSMMUP00000022569_from_374_to_418    97.7%  17.4%    GPEAQAASASSSPLEALEACLKGIPPSGSS-PSQLP---------------ATSC-SQNPQP   
12 9986.ENSOCUP00000018350_from_368_to_412    97.7%  13.0%    GPVAQAGRASSSPLEALEACLKGIPPSVSS-LPQPL---------------AASW-SQSPQP   
13 9685.ENSFCAP00000010620_from_362_to_406    97.7%  15.2%    GPVAQAGSASSSPLEALEACLKGIPLSGSL-PPQPP---------------ATSG-FRSPQP   
14 9361.ENSDNOP00000012682_from_370_to_413    97.7%  13.3%    GLVAQASSASSSPLEALEACLKGIPLKASL-PPQPL---------------TTSW--SRSLQ   
15 9615.ENSCAFP00000006644d_from_98_to_142   100.0%  24.4%    SPDVAAVTVETCPLGGLLSCLPETPTGWPSMAATSS---------------SSSS--SSGLP   
16 9598.ENSPTRP00000033989_from_100_to_143   100.0%  25.0%    ASPEAAAAREPCPLRGLLSCLPDGPTSRPHLATTPT---------------DSSC---SSGP   
17 9796.ENSECAP00000012515_from_92_to_135    100.0%  25.0%    ASPEAAVAMETCPLQGLLDCLPDTPVSRPSLATTPS---------------GSSS---SSGP   
18 10141.ENSCPOP00000009878a_from_98_to_141  100.0%  15.9%    ASLQAAVPVGICPLQGLLSCLPDSPVSQPSLATTPS---------------SSSS---SSGP   
19 9685.ENSFCAP00000010620_from_249_to_311    97.7%  14.5%    WGVKSEAASGDCPLQGLLNCLKEIPETPHG-RPSPSGVQEDPGAYRRSSGGPRPPQTPPPGP   
20 9615.ENSCAFP00000006644c_from_262_to_302   97.7%  20.5%    WEVKTEAVSGACPLQGLLNCLKEIPEAPHR-RSGPS---------------GVRD---PQLQ   
21 9796.ENSECAP00000012515_from_247_to_288    97.7%  20.5%    WGVKSEAVSGDCPLQGLLNCLKEIPEAQLR-HPTPS---------------GVGV---PQLP   
22 9600.ENSPPYP00000020364_from_256_to_301    97.7%  18.2%    GAVKTEAVSGDCPLQGLLNCLKELPEAQDR-HPSPS---------------GVAN---RRLQ   
23 10116.ENSRNOP00000040855d_from_255_to_300  97.7%  19.1%    CPVKTEAAPGDCPLQGLLNCLKEIPKAPDQ-RPSPS---------------GASDLQLQEDP   
24 10141.ENSCPOP00000009878f_from_254_to_301  97.7%  14.3%    WPVKTEAALGDCPLQGLLNCLKEIPKTHDR-YPSPS-------------RAGHSLVQEDPGP   
25 9913.ENSBTAP00000013482_from_254_to_295    95.5%  22.7%    WAVKTEAASGDCPLQSLLNCLKEIPEARDR-HPSPL---------------GASD----PRL   
26 9986.ENSOCUP00000018350_from_252_to_293    95.5%  20.5%    WPVKTETASGDCPLQGLLNCLKEIPEARGR-HPNPS---------------RARD----PQP   
27 9544.ENSMMUP00000022569_from_486_to_537    97.7%  20.5%    QQPGKGSPPGSSPLQGLENCLKEIPVPVLR-PAWPC---------------SSAA---DRGP   
28 9361.ENSDNOP00000012682_from_485_to_532    97.7%  25.0%    HQPGKGSPFGSSPLQGLENCLKEIPGPRPQ-PAWSW---------------SLAA---DGGL   
29 9796.ENSECAP00000012515_from_484_to_526    97.7%  22.7%    RPPGKGSPVGSSPLQGLENCLREIPVPGPQ-PAWSW---------------SSAG---DRGP   
30 10141.ENSCPOP00000009878c_from_478_to_525  97.7%  25.0%    QHSGKGCPPGSSPLQGLENCLREISVSRPQ-PSQPC---------------PSAV---DRAL   
31 10116.ENSRNOP00000040855b_from_487_to_529  97.7%  20.5%    QRLGKGYAPGNSPLQGLENCLREIPVPRPQ-AAWPC---------------SSAV---NRGL   
32 10141.ENSCPOP00000009878b_from_193_to_235  97.7%  18.2%    ESKGPRVSPGTSPLQGLINCLKDILMPGPQ-CPDLS---------------PGSV---PPPL   
33 10090.ENSMUSP00000110219_from_194_to_236   97.7%  31.8%    GSMGTGTLPENSPLQGLINCLKEILVPRPQ-HRGTA---------------PDLP---PSLP   
34 9986.ENSOCUP00000018350_from_191_to_233    97.7%  22.7%    GTPGAGTSPGSSPLQGLISSQKEIPVPRPQ-HPEVA---------------PKPL---PPPP   
35 9615.ENSCAFP00000006644a_from_200_to_242   97.7%  20.5%    GTGAIGLSPGNSPLEGLINCLKEILMPGPQ-NPEVS---------------PGLP---PPVP   
36 9913.ENSBTAP00000013482_from_192_to_235   100.0%  22.7%    GAGAVSISPGHSPLQGLINCLKEILEPGPQGPEGPR---------------SSPP---PPAP   
37 9685.ENSFCAP00000010620_from_190_to_232    97.7%  22.7%    GPMGTGISPGSSPLQGLINCLKEILVPGPQ-HPEVS---------------PRSL---PPVP   
38 9544.ENSMMUP00000022569_from_198_to_240    97.7%  25.0%    GTSEAGISPGNSPLQGLINCLKEILVPGPQ-HPETS---------------PSFL---PPLP   
   consensus/100%                                             ...........sshttL.ts..t.......................................   
   consensus/90%                                              ...t.t...tssPLpsL.ssL.th..s........................s..........   
   consensus/80%                                              t..tttssstssPLpuL.ssL+tI..sts...stss...............s.t....s...   
   consensus/70%                                              t..tpussstssPLpuL.sCLK-I..stsp..spss...............ssus...sstP