cov pid 1 [ . . . . : . . . 80 1 P41893|PPAL_SCH 100.0% 100.0% KSVLFVCLGNICRSPIAEAVFRKLVTDQN-ISDNWVIDSGAVSDWNVGRSPDPRTLEVLKKNGIHTKHL----ARKLSTS 2 M83656|163596/1 99.3% 45.4% ISVAFVCLGNICRSPMAEAIFKHQVEIQGYSPFFKRIDSFGTSGWHIGETPDPRAVSCLRNHGINTAHK----ARQVTKE 3 E1341032|E13410 99.3% 44.7% ISVAFICLGNFCRSPMAEAIFKHEVEKANLENRFNKIDSFGTSNYHVGESPDSRSSKTCKKHNVPVSHH----AQQINSS 4 P40347|PPAL_YEA 99.3% 50.0% KSVLFVCLGNICRSPIAEAVFRKLVTDQN-ISENWRVDSAATSGYEIGNPPDHRTVSICKQHGVKINHK----GKQIKTK 5 P53433|PTPA_STR 100.0% 40.1% ISVLFVCLGNICRSPMAEAIFRDLAAKKG-LEGKIKADSAGIGGWHIGNPADPRTEAVLADHGYGLDHA----ARQFQQS 6 SPO35016|O35016 94.0% 28.0% NNILVVCVGNICRSPTAERLLQRYHP-------ELKVESAGLGA-LVGKGPHEGTQEILRREGISFDGML---ARQVSEQ 7 P77153|WZB_ECOL 97.3% 30.0% MKLLFVCLGNICRSPAAENIMNAQIDQAG-LGAKIVCDSAGTSSYHVGDSADPTAISVAAEHQLSLEGHC---ARQISRR 8 Q55535|Y328_SYN 95.3% 38.7% NSILVVCTGNICRSPIGERLLRKRLP-------GVKVKSAGVHG-LVKHPPDRRMTESLKKRGYRVQGR----ARQFFPE 9 P75880|YCCY_ECO 97.3% 47.3% KSVLFVCPGNICRSPIAEAVFRKLVTDEK-VSDNWAIDSSAVSDWNVGRPADATAADVAANHGVSLEGHA---GRKLTAE 10 Q46630|AMSI_ERW 92.6% 26.7% KTILVVCIGNICRSPMAQALLRQALP-------GVSVISAGIGA-LSGYPADETASIVANEHGVSLQDHV---AQQLTAD 11 Q45408|EPSP_BUR 90.6% 24.7% KIIYFLCTGNSCRSQMAEGWAKQYLG------DEWKVYSAGIEA----HGADPSAVEVMAQHGIDISEHR---AQQLTGS 12 P45947|ARSC_BAC 85.9% 14.5% MKIAFICTGNSARSQMAEGFAKYYAKKYG---LDLEVYSAGSNP---AKRLNPNAVKAMKEVGIDISNQTSDI---IDSD 13 SPO66910|O66910 83.9% 18.2% STILIVCTGNICRSPIGERYLQQLLP-------SKNISSAGTQA-LVDHEIAPEAIKVMKEKGIDISAQYPKK---LEDI 14 Q48451|YOR5_KLE 92.6% 27.3% KNILVVCIGNICRSPMAEYLLKQNYP-------QLTIHSAGISG-MIGYSADQSAVEVARKNGISLAGHL---GRQFTSK 15 SPO52787|O52787 96.6% 25.3% LHVTFVCTGNICRSPMAEKMFAQQLRHRG-LGDAVRVTSAGTGNWHVGSCADEKAQLCMERIGIDMSPHI---AKKLNAE 16 Q10507|PTPA_MYC 94.6% 31.8% KAVLFVCLGNICRSPACEGICRDMVG------DKLIIDSAATSGFHVGQSADERAAGVLRAHGYPTDHR----AAQVGTE 17 SPO00810|O00810 93.3% 37.3% MDIIFVCTGNTCRSPMAEALFKSIAEREG---LNVNVRSAGVFA-SPNGKPDTRSQKVCKSNGVDISKQR---ARQITKA 18 P39155|YWLE_BAC 92.6% 23.5% KTIYFICTGNSCRSQMAEGWGREILG------EDWNVYSAGIE----THGATPHAVEALFEKHIALNHV----SSPLTEE 19 Q01257|ARSC_STA 83.2% 18.3% KKVMFVCKRNSCRSQMAEGFAKTLGA------GKIAVTSCGLES----SRVNPKAIEAMKEVDIDISNHTSDL---IDNH 20 SPP74313|P74313 83.9% 14.4% MRVLFMCTANSCRSILSEAMFNHLAP------PGFEACSAGSQP---SGRVHPTAIAMMEEVGIDISGQTSDP---IENF 21 SPO68022|O68022 84.6% 18.2% PSVLFVCVHNAGRSQMAAGLLTHLAG------DRIEVRSAGTEP---AGQVHPRSLATLEQAGIATHGLYSKG---SEAF 22 SPP71942|P71942 81.9% 17.6% FNVLFICSGNSARSIFAEALLRDLGA------GKFTAHSAGTRP---GTAVNPTAVAAMAEMGIDITANAPTL---LTGG 23 SPO68076|O68076 85.9% 20.8% MKVLFVCIHNTARSVMAEALFNAMAK-------SWKAESAGVEK---AERINPFALEVLSRNGHDTGGLRAKHLSEFQGP 24 SPO28910|O28910 83.9% 15.4% SKVLFICRNNSGRSQMAEGILRAMYG------AHYEVHSAGSDP----KDVDETVKRLLAERGLKAKEK----PRTVDEV 25 SPO27408|O27408 85.2% 14.4% TKFGFVCVQNAGRSQMSTAFAERERERRD-LEDSVEILTGGTHP---ADHISPLTIQVMEEIGVDMTGHRPKS---LREF 26 SPO52030|O52030 83.9% 13.1% MKIGFISKKGAVRALLAEAIAREILKKMG---IKAEVYSAGLEP---ERTVHEEVVEVMGEEGFDLSERTPRE---VSTD 27 SPO66881|O66881 83.9% 17.6% KKVLFLSRSNDCRTKIAEAIFNHISP------NNMLAVSAGIEP---AQDTPREVIEVLKEKGYPTKSLYPKP---IRKI 28 SPO30241|O30241 82.6% 24.2% TKLLFVCLGNICRSPAAEGVFLHLIEQRQ-LTDQFLVDSAGTGGWHVGNPLDLRAVATMRELGLKINGK----PRKFSED consensus/100% ..hhhhs.ts.sRs.hst.hh...............h.o.u.................h.t.th.ht............. consensus/90% .plhhlChtN.sRS.hupthhpt.h........th.h.Ssu.ts....t..p.ts.thhtp.sh.htt........hpt. consensus/80% hplhFlChsN.sRS.hAEshhpp.h........thth.SuGhts...sp.ss.ps.tshtp.Ghshpth.......hpt. consensus/70% hplhFlChGNhCRS.hAEulhpphht.......phplpSAGhps...upssc.pshpshpcpGlshstp.......lppt cov pid 81 . 1 . . . . : . 160 1 P41893|PPAL_SCH 100.0% 100.0% DFKNFDYIFAMDSSNLRNINRVKPQ--GSRAKVMLFGEYASPGV--SKIVDDPYY------GGSDGFGDCYIQLVDFSQN 2 M83656|163596/1 99.3% 45.4% DFVTFDYILCMDESNLRDLNRKSNQVKNCRAKIELLGSYDPQKQ---LIIEDPYY------GNDADFETVYQQCVRCCRA 3 E1341032|E13410 99.3% 44.7% DFKDFDYVIGMDESNVANLRHLKP--RDSKTVVELFGHWKTSDEF-KTIVDDPYY------GGIDGFEYNYKQICHFTDE 4 P40347|PPAL_YEA 99.3% 50.0% HFDEYDYIIGMDESNINNLKKIQP--EGSKAKVCLFGDWNTNDGTVQTIIEDPWY------GDIQDFEYNFKQITYFSKQ 5 P53433|PTPA_STR 100.0% 40.1% WFSRLDLVVALDAGHLRALRRLAPT-ERDAAKVRLLRSYDPAVAGGDLDVPDPYY------GGRDGFEECLEMVEAASTG 6 SPO35016|O35016 94.0% 28.0% DLDDFDYIIAMDAENIGSLRSMAGF--KNTSHIKRLLDYVEDSD--LADVPDPYY--------TGNFEEVCQLIKTGCEQ 7 P77153|WZB_ECOL 97.3% 30.0% LCRNYDLILTMEKRHIERLCEMAP---EMRGKVMLFGHWDNEC-----EIPDPYR------KSRETFAAVYTLLERSARQ 8 Q55535|Y328_SYN 95.3% 38.7% DFAEFDLILAMDGDNYRNILAQDPA-GQYHHKVKMICDYTEKFG--DREVPDPYY------GGQAGFEHVIDLLEDACGN 9 P75880|YCCY_ECO 97.3% 47.3% MARNYDLILAMESEHIAQVTAIAP---EVRGKTMLFGQWLEQK-----EIPDPYR------KSQDAFEHVYGMLERASQE 10 Q46630|AMSI_ERW 92.6% 26.7% MCRDSDLILVMEKKHIDLVCRINP---SVRGKTMLFGHWINQQ-----EIADPYK------KSRDAFEAVYGVLENAAQK 11 Q45408|EPSP_BUR 90.6% 24.7% LVNRADLILVMGGAQKREIQARHP---SKTGSVFRLGEMEQF------DIDDPYR------KQMMAFEDALAMIQRGVDA 12 P45947|ARSC_BAC 85.9% 14.5% ILNNADLVVTLCGDAA-DKCPMTPP----HVKREHWG------------FDDPARAQGTEEEKWAFFQRVRDEIGNRLKE 13 SPO66910|O66910 83.9% 18.2% PLNEMDLIITLCGGAK-ESCPTVP-----GARQEHWD------------LPDPAAYEGSEEERLEFFRKVRDEIEKRVIK 14 Q48451|YOR5_KLE 92.6% 27.3% LSKEYELILVMEKNHIEQISNIAP---EARGKTMLFGHWLEQR-----DIPDPYR------KSEEAFASVFKLIEQSALL 15 SPO52787|O52787 96.6% 25.3% LLKQADLILVMSQNQQKHIEQTWP---FAKGKTFRLGHWQGK------NIPDPYQ------HDQAFFDETSLLIQTCVAD 16 Q10507|PTPA_MYC 94.6% 31.8% HLA-ADLLVALDRNHARLLRQLG----VEAARVRMLRSFDPRSGTHALDVEDPYY------GDHSDFEEVFAVIESALPG 17 SPO00810|O00810 93.3% 37.3% DFSKFDVIAALDQSILSDINSMKPS--NCRAKVVLFNPPN--------GVDDPYY-------SSDGFPTMFASISKEMKP 18 P39155|YWLE_BAC 92.6% 23.5% LMESADLVLAMTHQHKQIIASQFG---RYRDKVFTLKEYVTGSH---GDVLDPFG------GSIDIYKQTRDELEELLRQ 19 Q01257|ARSC_STA 83.2% 18.3% ILKQSDLVVTLCSDAD-DNCPILPP----NVKKEHWG------------LEDPAG------KEWSEFQRVRDEIKLAIEN 20 SPP74313|P74313 83.9% 14.4% NADDYDVVISLCGCGVNLPPEWVT-----QEIFEDWQ------------LEDPDG------QSLEVFRTVRGQVKERVEN 21 SPO68022|O68022 84.6% 18.2% EGAPPDIVITVCDAAAGEACPLYLG----AALKAHWG------------LADPSALDGDEALRDAAFHATLARIEQRCRA 22 SPP71942|P71942 81.9% 17.6% QVQSSDVVITMGCGDA---CPYFP-----GVSYRNWK------------LPDPAG------QPLDVVRMIRDDIADRVQA 23 SPO68076|O68076 85.9% 20.8% AAPQMEFVFTVCDTAAAEDCPPWPG----QPITGHWG------------LPDPVKATGTEAERALVFAQTYGALRRRIAA 24 SPO28910|O28910 83.9% 15.4% NLDDFDLIVTVCEESS---CVVLPT----DKPVTRWH------------IENPAG------KDEGTYRRVLAEIEERVKK 25 SPO27408|O27408 85.2% 14.4% EGEKFDIVASLCDEA----CPVFLG----GERYLHAE------------FPDPRG------ADIDTLRRIRDEISDWIKK 26 SPO52030|O52030 83.9% 13.1% ELESCDIVATMGCST----LELDAE----TVDVRDWA------------LDDPDG------QEMEQVREIRDDIEQRVVD 27 SPO66881|O66881 83.9% 17.6% PYKSLDVVVILDNEIKD-KCPFEIS----HKRRENLH------------IDEPKN------LSIPELRRIRDKIEEELKK 28 SPO30241|O30241 82.6% 24.2% MVSDFDAIVEFDE----------------LGVGEFWD------------VKKPSS--------AEEYREVRSEIWRRVEE consensus/100% .....-hlh.htt......................h.............h.pP.............h......h...... consensus/90% .htp.Dhlhshttt...............t..h..ht............l.-P.............ht.hht.l.t...t consensus/80% .hpphDhllshsttt....p.h.s.....tshh.hht............l.DPhh......tt.t.aptsht.lppthtt consensus/70% .hpphDlllshspptht..p.hhs.....pschhhht............lsDPhh......tp.tsFcpshs.lpptspt cov pid 161 ] 164 1 P41893|PPAL_SCH 100.0% 100.0% FLKS 2 M83656|163596/1 99.3% 45.4% FLEK 3 E1341032|E13410 99.3% 44.7% FLKQ 4 P40347|PPAL_YEA 99.3% 50.0% FLKK 5 P53433|PTPA_STR 100.0% 40.1% LLAA 6 SPO35016|O35016 94.0% 28.0% LLAS 7 P77153|WZB_ECOL 97.3% 30.0% WAQA 8 Q55535|Y328_SYN 95.3% 38.7% LLTS 9 P75880|YCCY_ECO 97.3% 47.3% WAKR 10 Q46630|AMSI_ERW 92.6% 26.7% WVNA 11 Q45408|EPSP_BUR 90.6% 24.7% WVPR 12 P45947|ARSC_BAC 85.9% 14.5% FAET 13 SPO66910|O66910 83.9% 18.2% LMEE 14 Q48451|YOR5_KLE 92.6% 27.3% WAEK 15 SPO52787|O52787 96.6% 25.3% WTKH 16 Q10507|PTPA_MYC 94.6% 31.8% LHDW 17 SPO00810|O00810 93.3% 37.3% FLTE 18 P39155|YWLE_BAC 92.6% 23.5% LAKQ 19 Q01257|ARSC_STA 83.2% 18.3% FKLR 20 SPP74313|P74313 83.9% 14.4% LIAK 21 SPO68022|O68022 84.6% 18.2% FLGL 22 SPP71942|P71942 81.9% 17.6% LIAE 23 SPO68076|O68076 85.9% 20.8% FVDL 24 SPO28910|O28910 83.9% 15.4% LVGE 25 SPO27408|O27408 85.2% 14.4% EFNP 26 SPO52030|O52030 83.9% 13.1% LFDE 27 SPO66881|O66881 83.9% 17.6% LFGV 28 SPO30241|O30241 82.6% 24.2% LVKR consensus/100% .h.. consensus/90% hht. consensus/80% hhtt consensus/70% hhtp