cov pid 1 [ . . . . : . . . 80 1 Q9U5D8/21-818 100.0% 100.0% -WNTGYQYVYNFEARTVAGIHQ-V----ADQYSGNYIRGKLYAYVEPDNK-------VTFQFQDAKYADFNEHFPEG--W 2 Q9U5D7/21-774 94.4% 55.6% -WKAGQQYTYKIEARTVTGLHQ-V----ADQYSGSLIQGILKVYADSENQ-------LTLQVQDAKYADINQRLHEG--W 3 Q9U5D6/22-808 98.0% 52.1% -WRPGKQYTYQVRGRTLTGIHQ-V----RNQFSGVLLRALLQITVDTETQ-------LTLQLLDPEYADVNQHMSEG--W 4 O02024/20-789 95.7% 49.9% -WKAGTKYTYQIQGRTLTGLHQ-V----ADQYTGVMIQGQLTVRAESDNK-------ATAVIENAKYADLQANLSRG--W 5 Q17083/21-790 95.6% 42.7% -WKTGQEYTYQVRGRTLAALHQ-V----ADQYTGIALKAQLKCQPKGSDA-------LSCNIQRPQVAEIHAQLPGG--W 6 O17428/22-746 89.7% 34.1% -WKTDTEYQYAVRGRTLSALHD-V----ADQYSGIIMRALLTIQPKSDGT-------LEAKVTKARYAQIHTKLPGG--W 7 VIT1_AEDAE/95- 98.0% 34.8% -WMPNYEYVYNVTSKTMTALAE-L----DDQWTGVFTRAYLVIRPKSRDY-------VVAYVKQPEYAVFNERLPHG--Y 8 Q9NAW9/41-851 97.4% 33.7% -WEPNKEYVYNVTTKTMTALPD-L----EDYWTGIVTHGYLVIRPKDHNY-------VVAYIDRPTYAAFNEYLPRG--Y 9 VIT_ANTGR/23-7 88.0% 30.1% -WKDNTEYVYSVNGRTLTGLEE-T----ADQYSGVFLEAKLHLSIRPDGK-------LQGRISEPKFAQILSQLPDG--W 10 Q9U5F1/33-832 97.1% 32.9% -FEADKQYVYKLESRTLTSLNQPS----ASQYTGIVIRATVLMHLKEEGSRPYAHSVAILELNQPEYGKIHGELPGG--W 11 Q9U8M0/20-767 92.9% 31.7% -WDPNRQYVYKVESRAFTALHQ-I----SNQYAGILMRAKLIIQPKTREE-------LHAQLVEVEHSQINKELPSG--W 12 BAB32673/21-77 92.9% 32.5% -WEPGKRYEYHVRGRTLTALHE-V----ANQYSGFRFKGKLVIEPHTPSV-------LRGQLKDTYHMTVHRMLPDG--W 13 O76823/23-734 87.7% 25.1% -LPINSQLDYHVHGRTFSSLFQ-V----ANQYTGILYKARLSLDRNEDQL-------ITGKVTEAQFSPVNTQFSSG--W 14 Q9GR96/33-742 87.5% 22.3% WIPVQRRYTYNVEGRTLSAIHE-V----SNKFTGIFLRGQLILERPEPTL-------IRGQVREAKYAQVNQDFSNG--W 15 VIT_BOMMO/34-7 87.8% 23.6% -WQVGKQYRYEVTSRTLAHLQE-------GPSSGSAFKAQFTIRVKSPGR-------LQAKLENPQHGNFNEQLPD---- 16 Q9GUX5/30-740 87.7% 23.2% -WQDGKVYRYDVKSHTLARLEE-------GPNSGSAFKAHFIIRVKSPGR-------LQAKLENPKHAQIHEQLSY---- 17 Q25269/30-712 84.3% 20.2% -WQNGKQYLYEVNSHTLSHFYE-------GTSSGNAFKANFIIRVTAQGL-------LQAKLEEPRRAQFHQKLDN---- 18 VIT_ACITR/17-5 70.1% 9.4% -FSGSKTYQYKYEGVILTGLPE-K----GLARAGLKVHCKVEISEVAQKT-------YLLKILNPEIQEYNG------IW 19 VTA2_XENLA/24- 70.1% 10.6% -FSESKISVYNYEAVILNGFPE-S----GLSRAGIKINCKVEISAYAQRS-------YFLKIQSPEIKEYNG------VW 20 I50441/24-594 70.1% 9.6% -FNSRRSYLYNYEGSMLNGLQD-R----SLGKAGVRLSSKLEISGLPENA-------YLLKVRSPQVEEYNG------VW 21 JC4956/24-592 70.1% 9.2% -FAASKTYVYKYEALLLGGLPE-E----GLARAGVKVISKVLISAVAENT-------YLLKLVNPEIFEYSG------VW 22 Q9W6I2/24-592 70.1% 9.9% -FAPDKTYVYKYEALLLGGLPQ-E----GLARAGIKVSSKVHLSAVTENT-------FLMKLMDPLLHEYAG------IW 23 AAK15158/24-59 70.1% 10.0% -FASSKTYVYKYEAVLMAGLPE-E----GLASAGLKVLSKVLISNIAENT-------YLLKLADPELFEYSG------VL 24 VIT1_FUNHE/22- 70.1% 10.8% -FAAGKTYVYKYEALILGGLPE-E----GLARAGLKISTKLLLSAADQNT-------YMLKLVEPELSEYSG------IW 25 VIT2_FUNHE/24- 70.2% 11.0% -FAPGKTYEYKYEGYILGGLPE-E----GLAKAGVKIQSKVLIGAAGPDS-------YILKLEDPVISGYSG------IW 26 AAK15157/25-59 70.1% 10.9% -FALGKTYTYKYEAVILGGLPE-A----GLAKAGVKLSSKVIISAEAPNT-------FLLKLLDPELYEYSG------IW 27 Q9YGK0/24-592 70.1% 11.1% -FASVKTYMYKYEAVLMGGLPE-E----GLARAGVKIRGKVLISATSAND-------YILKLVDPQLLEYSG------IW 28 VIT1_CHICK/24- 70.1% 10.9% -FGENKVYTYNYESILFSGIPE-K----GLARTGIRIRSEVEISGIGPKL-------CLIRIHSIEAAEYNG------IW 29 VIT_ICHUN/18-5 70.3% 10.9% -FQPGKVYRYSYDAFSISGLPE-P----GVNRAGLSGEMKIEIHGHTHNQ-------ATLKITQVNLKYFLG------PW 30 Q9DFT9/22-590 70.1% 8.5% -LNSQKTYEYKYEGLVQVGREL-P----HLVESALKLRCTFKIIGESPHT-------FVLQVSNVDFEDFNG------IP 31 VIT6_OSCBR/26- 74.2% 11.2% -YRSGREYRYQFNGHLSAGLPI-P----GEENSATRIQSLIRIQPENGDF-------MRLQMTKTRFATSEED----RVL 32 VIT6_CAEEL/34- 74.1% 9.5% -FRAGREYRYLFNGQLSAGLPV-P----STPQGISRLQSQVTLQWTDGNT-------VRMQLQKTRFATSQQESNSMKML 33 VIT1_CAEEL/24- 73.2% 10.5% -FEPKIDYHYKFDGLVLSGLPT-A----SSELSQSRFSARVRIQAVDDRH-------IHLQLVNIHMAASHLP-ESEQIP 34 Q9N4J4/125-718 72.8% 9.9% -FSPKSEYVYKFDGLLLSGLPT-T----FSDASQTLISCRTRLQAVDDRY-------IHLQLIDIQYSASHIP-QSEQWP 35 Q9U572/15-674 79.2% 12.1% -LQPGLEYQYRYSARVASGIPS-I----NRQFAAAGIQADVTVQMAADYS-------VVVQFSNIEVGDLNKVLDCD--- 36 Q9UAR3/16-714 82.6% 9.4% -LHSNLEYQYRYSGRVASGIPF-I----KSQYSGAGFQADVFLQITSTKV-------PFFKISNTMVGEYHDELECD--- 37 APLP_MANSE/39- 65.9% 9.3% -FAAGQKYNYGVEGTVSVYLTG-A----DNQETSLKMLGQASVSAISNCE-------LELSVHNMVLSGPDG-------- 38 Q9U943/40-578 66.5% 8.4% -YQKGQTYTYSFEGTTLTSLPG-T----QGEPVRLKLKATADLSVADDCN-------KVLRLRGVTVSGPDS-------- 39 Q9NDS1/42-586 67.3% 8.8% -YQPEKTYTYQYSGKSRVQLKG-V----DDGVSETEWAARVDLTWISPCD-------VAISFNNMKMDG--A-------- 40 Q9GSG2/42-585 67.2% 8.8% -YQPGKTYTYEYSGKSRIQLKG-V----EGGLTETDWSAQVELSWITPCD-------MVITMKDSKTDG--A-------- 41 Q94907/43-573 65.0% 9.3% -YIPGNYYDYSFDSILTIGASSDVP--NDSDDTSLKVSGSAKIFAKGNCG-------YTLQLSSVKVTN----------- 42 Q9VLA0/86-645 65.9% 8.7% FNYGEQLYKYQYTVAVRTEFAG-----SGDNSSDLLLKSDLEIFFPKPCEG-------YLRINDAKLYDTLDELNDNESD 43 178812/46-598 67.8% 10.1% -FKHLRKYTYNYEAESSSGVPG-----TADSRSATRINCKVELEVPQLCS-------FILKTSQCTLKEVYGFNPE---- 44 Q9NDN7/26-625 73.2% 11.8% -WDKEVIYNWKALVKAGTNLPT-------SYASHFVLEGKIHVQANSNAT--------HVKITDLSYKLYNG-------I 45 Q9VF21/28-475 54.8% 7.0% ----NKQMLYEYEGNVLVGAKPQDEGHQAPPTTGWIVRGKLTLQRQSELVLA-----AALVIDDVTLNNSGE-------- 46 Q9U785/36-565 65.5% 7.8% --KAQSTYVYSLDAKTVLTPRD-------SQK--VTIKADAEVAIVSSCE-------AVLRLQNVAIDGVPN-------- 47 Q9VIH3/38-567 64.9% 7.7% -FKLQNQVILQELGRDSSSAET-------SYT----FETDLKINSVWSGD--------EDQLLEVFISGSK--------- 48 MTP_MESAU/28-5 66.4% 8.9% -LNNERLYKLTYSTEVFLDGGKGK----LKDSVGYRISSDVDVVLLWRNPDGDDDQLIQVTITAVNVENVNQQRGEKSIF consensus/100% .........h...s......................h...h.h..................h.t..h............. consensus/90% .h..t..Y.Yphpu...sth............st.hhps.h.l.....t........h.hph.p..h.t..t........ consensus/80% .atstppY.Yphpuhhhssl.t......t.t.sshhhpupl.lp..s.t........hhhpl.psphtt.tt........ consensus/70% .atssppYhYphpuhhhsul.p......stthsuhhhpupl.lpshstst.......hhhplppsphtphpt........ cov pid 81 . 1 . . . . : . 160 1 Q9U5D8/21-818 100.0% 100.0% ATDLHHYQFSYKSFPIKND--------------------VFQVYFN-NGLVDK--LFVYKDIPHWELNFIKAIASQFQTD 2 Q9U5D7/21-774 94.4% 55.6% ATYIPESQANYKGFPAKNQ--------------------PFQLLLS-NGVVQK--MVVDKDIPTWELNFLKGIASQFQVD 3 Q9U5D6/22-808 98.0% 52.1% ATKLPEEQVEYKPYPLRNT--------------------PFQLLMK-NGVVDK--MVVEKNLPAGDVNFYKAIASQLQVD 4 O02024/20-789 95.7% 49.9% DSEIQENELQYNELPISKD--------------------PFEIHFR-NGVIEK--MVVNKDIPQWQLNFYKSIASQFQVD 5 Q17083/21-790 95.6% 42.7% DSPLPEKKTNYQKFELSEK--------------------PFEIKFK-NGVIDD--LVVEKSLPTWQVNIIKSIASQLQVD 6 O17428/22-746 89.7% 34.1% NSEIPDHKLEMKQFPMSEK--------------------VFEIKMK-HGVVRD--LIVDKDVPTWEVNVLKSIVSQLQVD 7 VIT1_AEDAE/95- 98.0% 34.8% ATKFYHDMFKFQPMPMSSK--------------------PFGIRYH-KGAIKG--LYVEKTIPNNEVNILKAWISQLQVD 8 Q9NAW9/41-851 97.4% 33.7% RTELSRFNLKWQPMPFSSK--------------------PFGIYYN-KGAVKG--FYVEKTVPNHEVNMLKGWVSQLQLD 9 VIT_ANTGR/23-7 88.0% 30.1% KSEIPDSQISYKQLQLSQK--------------------PFQLVLE-NGLIKR--LIVEKDTLNWEANIIKSIVSQFQMD 10 Q9U5F1/33-832 97.1% 32.9% RGQLPG-DITMKPLYLNSS--------------------PVEVHYR-NGVVDS--IRVSKNMPTYELNIIKSIVSQLQFD 11 Q9U8M0/20-767 92.9% 31.7% DQEIEIHD--WQQLSALKD--------------------AFAIILQ-NGHIVN--VKVKDSTPNWAVNILKGILSTLQVN 12 BAB32673/21-77 92.9% 32.5% DQKFEERESNWERVGMKNK--------------------PFEVHVG-NEFQFN-KLIVTEDTPVWETNMIKGVLSQIQVN 13 O76823/23-734 87.7% 25.1% DESVPDEKLHWDVVPMSQQ--------------------PFQIELN-SRGEVR-KLRVNKFVELWEINMIKAIISQLQVV 14 Q9GR96/33-742 87.5% 22.3% KQNIPDSQLKWKDLPLRQD--------------------TFDAHINDTSGEVE-ILYVNSQLQLWEVNVIKGLLSQIQLT 15 VIT_BOMMO/34-7 87.8% 23.6% PRELP-VDLKYQPTPNIDK--------------------VFEIEID-GGRIVS--LDFPTSVPVPQENLIKGLISALQLD 16 Q9GUX5/30-740 87.7% 23.2% ERDVP-ENLKYQPVQNLDK--------------------PFEISFD-GGRINT--FNLPSSVSLQHENLLKGLISTLQLD 17 Q25269/30-712 84.3% 20.2% KMQIP-ADLKYTNVVNLDQ--------------------PFEISFD-GGRILS--LRLPEVLSVANENLLKGLISTLQVD 18 VIT_ACITR/17-5 70.1% 9.4% PKAPFYPASKLTQALASQL--------------------TQPIKFQYRNGQVG-DIFASEDVSDTVLNIQRGILNMLQLT 19 VTA2_XENLA/24- 70.1% 10.6% PKDPFTRSSKLTQALAEQL--------------------TKPARFEYSNGRVG-DIFVADDVSDTVANIYRGILNLLQVT 20 I50441/24-594 70.1% 9.6% PRDPFTRSSKITQVISSCF--------------------TRLFKFEYSSGRIG-NIYAPEDCPDLCVNIVRGILNMFQMT 21 JC4956/24-592 70.1% 9.2% PKDPFVPAAKLTSALAAQF--------------------SIPIKFEYAKGVVG-KVLAPTAVSETVLNVHRGILNILQLN 22 Q9W6I2/24-592 70.1% 9.9% PKDPFVPATKLTSALAAQL--------------------QIPIKFEYANGVVG-KVFAPAGVSPTVLNLHRGILNILQLN 23 AAK15158/24-59 70.1% 10.0% PKDPFIPANMLKEALASQL--------------------ATPIKFEYANGVVG-KVYSPEGISTTVLNIFRGVLNILQLN 24 VIT1_FUNHE/22- 70.1% 10.8% PKDPAVPATKLTAALHLSS--------------------QFPSSLNTPMVFVG-KVFAPEEVSTLVLNIYRGILNILQLN 25 VIT2_FUNHE/24- 70.2% 11.0% PKEVFHPATKLTSALSAQL--------------------LTPVKFEYANGVIG-KVFAPPGISTNVLNVFRGLLNMFQMN 26 AAK15157/25-59 70.1% 10.9% PTDPFVPATKLTSALAAQL--------------------LTPIKFQYANGVVG-AIFAPAGVSTTVLNVFRGVLNLLQLN 27 Q9YGK0/24-592 70.1% 11.1% PKDPFHPATKLTTALATQL--------------------STPIKFEYTNGVVG-RLAAPPGVSTTVLNIYRGIINLLQLN 28 VIT1_CHICK/24- 70.1% 10.9% PTSSFSRSLKLTQALTGQL--------------------SIPIKFEYSNGHVG-NLMAPDSVSDDGLNIYRGILNILELS 29 VIT_ICHUN/18-5 70.3% 10.9% PSDSFYPLTAGYDHFIQQL--------------------EVPVRFDYSAGRIG-DIYAPPQVTDTAVNIVRGILNLFQLS 30 Q9DFT9/22-590 70.1% 8.5% GKSVFSPSKNITKYLSAEI--------------------SQPIISEYSKGQIT-DIRTAPGVSNTVVNIVRGILGFLQVT 31 VIT6_OSCBR/26- 74.2% 11.2% SFENMNEVP-VSEKVEKVL--------------------SLPIRFSYRHGMVG-EIEFSTEEQTWSSNIKKAVVNMLQVN 32 VIT6_CAEEL/34- 74.1% 9.5% PFERFEEVERMNREHQELL--------------------SMPVEFDYEHGLVR-EIRFAENDQPWSENIKRAVINMLQVN 33 VIT1_CAEEL/24- 73.2% 10.5% SLNSMEQRE-LSEEYKQML--------------------KLPLRAQLRNGLIA-ELQFDKEDAEWSKNMKRAVVNMISFN 34 Q9N4J4/125-718 72.8% 9.9% KIESLEQRE-LSDELKELL--------------------ELPFRAQIRNGLVS-EIQFSSEDAEWSKNAKRSILNLFSLR 35 Q9U572/15-674 79.2% 12.1% LRAPLPIEYHPLEDYVDLL--------------------EKPFRVIMNESHVP-SYMEGPEEPIWISNVRKGFVNIFRVP 36 Q9UAR3/16-714 82.6% 9.4% TRAPLPIEYHPLVEGKELL--------------------EKPFQAIPGEQRGE-EHLVGPAEPAWITNIKKAIVRAFSIP 37 APLP_MANSE/39- 65.9% 9.3% -------KKYPCPQGIEK---------------------PVRFSYQ-DGRVGP-EICAAEDDSRRSLNIKRAIISLLQAE 38 Q9U943/40-578 66.5% 8.4% -------KNYANLKDLEAH--------------------PVLANFK-GSSINK-QLCSEDGVNQSSLNIKQAILSLLQTP 39 Q9NDS1/42-586 67.3% 8.8% -------RGPIAARTLERH--------------------PLVVAVV-DGRV-Q-HVCAHPDDEPWAINLKKGVASAFQNS 40 Q9GSG2/42-585 67.2% 8.8% -------TVPGASRFLERY--------------------PLVVAVT-DGKV-H-HVCSHPDDDTWSINLKKGVASAFQNS 41 Q94907/43-573 65.0% 9.3% ------TKESVEKKILNSI--------------------QKPVQFTLVSGILEPQICSDSSDLDYSLNIKRAVVSLLQSG 42 Q9VLA0/86-645 65.9% 8.7% SSEKTKEYDYYDNLANEESESQNYDNMHPKSSDFNVDLTKNLLRFAFHDGLIS-EVCPQEQETPWVLNIKKGILSAFQNT 43 178812/46-598 67.8% 10.1% GKALLKKTKNSEEFAAAMS--------------------RYELKLAIPEGK-QVFLYPEKDEPTYILNIKRGIISALLVP 44 Q9NDN7/26-625 73.2% 11.8% LNHVQEHEAHSVPLHLKELEH------------------VFKIIYDTKGLAIG--IVTEAQEKEFSRNIKKAIATIFQMD 45 Q9VF21/28-475 54.8% 7.0% ------KFLQNKEMYPPYK--------------------PFKIALTKDGAISH--VVFKEGDPIWSMNFKRAIASVLQFQ 46 Q9U785/36-565 65.5% 7.8% ------GAELAAELAAKS----------------------FAFGYF-NGRILG--VCPANDDQDWSLNVKKAIVSALQVQ 47 Q9VIH3/38-567 64.9% 7.7% ------VDASGKARSITRIP-------------------DRPFYISLVRGQPD-KVIAHTSKDQSLLNLERGIASLLQLR 48 MTP_MESAU/28-5 66.4% 8.9% KGKTTPKIIGKDNLEALQR----------------------PVLLHLVRGKVK-EFYSYENEPVGIENLKRGLASLFQMQ consensus/100% .......................................................h...........Nh.puhht.h... consensus/90% ...........t............................h.h.ht..th..t..h....t......Nhh+ulhs.hph. consensus/80% .......t..hp.h..tp......................h.h.hp.tthh.t..lhs.tt.s.h.hNhh+ulhs.hQhs consensus/70% .tp....thphpth.hpph....................sh.lphp.ssshht..lhs.ps.ssh.hNlh+ullshhQhs cov pid 161 . . . 2 . . . . 240 1 Q9U5D8/21-818 100.0% 100.0% VQGQNLKKSKFNDVPKG----NQLTGIFKTWEDSVNGEYEVMNEVSVLPEYLIESQPELAPLPHLRNE-G-EFYELLKTR 2 Q9U5D7/21-774 94.4% 55.6% TQGKNLKESKLNSVPHG----EQDSGVFTTMEESTNGKYETIYEVSVLPEYILQSKPELAPLEHLKGD-G-EHYKVVKTR 3 Q9U5D6/22-808 98.0% 52.1% TQGVNLKQSKLNNVPQG----GQQNGVYKTYEDSINGVYETIYEFYPLPEYVLQSRPELVPQPQLKET-GDEVYTVEKTR 4 O02024/20-789 95.7% 49.9% TQGKNLKDSKINLVPSGQ--SGEPMGVYKTMEDSVNGIYETLYDISVLPEYILQARPELAPLPHLKGD-G-EFIEVVKTR 5 Q17083/21-790 95.6% 42.7% TQGENAMKSRYNQEPEG----DQAYATYKAMEDTVTGECEVLYDISPLPEYVLQTKPELAPVPQLKGS-G-QIIDIVKTS 6 O17428/22-746 89.7% 34.1% TQGENLMASKYNQEPED----EGVTAMFKTMEDTVGGRCEVLYDINPLPEFVLQKRPELVPMPDIRGD-G-EIIDIVKTK 7 VIT1_AEDAE/95- 98.0% 34.8% TRGANLMHSSKPIHPSK----NEWNGHYKVMEPLVTGECETHYDVNLIPAYMIQAHKQWVPQGQLRGE-DDQFIQVTKTQ 8 Q9NAW9/41-851 97.4% 33.7% TQGAYVIKSEFNQFPEN----NTLTGVYKTMEPSVTGECETLYDVNPVPEFHFQSHKEWVPQPQWLEE-DQHVFHVVKSR 9 VIT_ANTGR/23-7 88.0% 30.1% LQGENALQNPTSSFPTN----EYMDAVFKTMEETVTGKTETIYDIHRLPEYLVQSQPWIAPQYKLKGE-G-DLIEVIKSK 10 Q9U5F1/33-832 97.1% 32.9% TEGENIQKSRSNSLFDN---SDDPVVTFKTMEASVTGKCETLYDFSPLLKQELMENPKLAPRVGLSKLNDIGLFRVVKTI 11 Q9U8M0/20-767 92.9% 31.7% TQADNLVRHRYNILPNA----STDSAVYSIRETTITGECEVEYDVSPLPALPLLQHPELAPLSNVNDN----VIDIEKTQ 12 BAB32673/21-77 92.9% 32.5% LKEVGPDPRDE----QE----DRLRKIFKVHESSVTGRCEVLYDITPITKFNMLPQP-LVEIEEENVN----VLQVMKTQ 13 O76823/23-734 87.7% 25.1% VDEDKK--------------------VYRVFESTVTGRCEALYEVDHLYPTTYLNPW---QWTQQHDT----KLRIMKTH 14 Q9GR96/33-742 87.5% 22.3% TQPSFKP-------------------VYRVKESIITGRCHTLYDFSPLLKTEMK------LWNYLDND----NLQVTRTQ 15 VIT_BOMMO/34-7 87.8% 23.6% TSAHRVIHDSQNNYDRE-----QQQGLFRKMETDVTGDCETLYTVSPVASEWRRELP--KFANEQDP------VEVTKST 16 Q9GUX5/30-740 87.7% 23.2% LSTHRNIHGSQDSYDRE-----QKQGLFRKMETDVTGDCETLYSVSPVASEWRRELP--KFASQEDP------IEITKSK 17 Q25269/30-712 84.3% 20.2% LTNYRLVNRSQDSYDKN-----SQQGLFSKFETDVTGDCETVYSVSPVNAEWRREVP--HFASDSAP------IQITKSK 18 VIT_ACITR/17-5 70.1% 9.4% IKTTQN--------------------VYGLQENGIAGICEASYVIQEDRKANKI-------------------I-VTKSK 19 VTA2_XENLA/24- 70.1% 10.6% IKKSQD--------------------VYDLQESSVGGICHTRYVIQEDKRGDQI-------------------R-IIKST 20 I50441/24-594 70.1% 9.6% IKKSQN--------------------VYELQEAGIGGICHARYVIQEDRKNSRI-------------------Y-VTRTV 21 JC4956/24-592 70.1% 9.2% IKKTQN--------------------VYELQEAGAQGVCKTHYVIREDAKAERI-------------------H-LTKSK 22 Q9W6I2/24-592 70.1% 9.9% LKKTQN--------------------IYELQEAGVQGVCRTHYAINEDTKANHI-------------------I-VTKSK 23 AAK15158/24-59 70.1% 10.0% IKKTQN--------------------VYELQEAGAQGVCSTLYAITEDEKADRI-------------------L-LTKTR 24 VIT1_FUNHE/22- 70.1% 10.8% IKKTHK--------------------VYDLQEVGTQGVCKTLYSISEDARIENI-------------------L-LTKTR 25 VIT2_FUNHE/24- 70.2% 11.0% IKKTQN--------------------VYDLQETGVKGVCKTHYILHEDSKADRL-------------------H-LTKTT 26 AAK15157/25-59 70.1% 10.9% IKKTQN--------------------VYELQEAGTQGACRTHYVISEDVKTERL-------------------H-LTKTK 27 Q9YGK0/24-592 70.1% 11.1% VKKTQN--------------------VYEMQESGAHGVCKTNYVIREDARAERI-------------------H-LTKTK 28 VIT1_CHICK/24- 70.1% 10.9% LKKMQH--------------------SYSIQEAGIGGICNTTYAIQENKKANLV-------------------D-VTKSK 29 VIT_ICHUN/18-5 70.3% 10.9% LKKNQQ--------------------TFELQETGVEGICQTTYVVQEGYRTNEM-------------------A-VVKTK 30 Q9DFT9/22-590 70.1% 8.5% VKTTQS--------------------FYELIELGIHGLCQSSYTVDEDSNPKEL-------------------I-VTRIV 31 VIT6_OSCBR/26- 74.2% 11.2% LVKKGMSEKNEY------ETEHDNDFFLSN-ERTLEGECEVAYTKIE-KSEKEQ-------------------Q-WTKSI 32 VIT6_CAEEL/34- 74.1% 9.5% ILKKEKYEGAEK------SDNQEPTFSFTNVERTLEGECEVLYTVEEIKKEDKQ-------------------R-WAKSI 33 VIT1_CAEEL/24- 73.2% 10.5% PIAPRNEIEKIESSYDKEEQSEENTSFF-TNEKTLEGDCQVAYTVIR--EQKKT-------------------I-ITKSI 34 Q9N4J4/125-718 72.8% 9.9% KSAPVDEMSQDQ----KDMESDKDSLFFNVHEKTMEGDCEVAYTIVQ--EGGKT-------------------I-YTKSV 35 Q9U572/15-674 79.2% 12.1% LFWS---TELHSTKLN-----------YGAVEETLVGRCQNWYTSMKLPVNLAEE------------------VNVQREH 36 Q9UAR3/16-714 82.6% 9.4% PIMANAGRQVDAFKRTT----------YSHNGTFIHGDCMCWYSMIHLNKEEAAR------------------ENRQREA 37 APLP_MANSE/39- 65.9% 9.3% QKPS--------------------------VQVDVFGVCPTEVSSSQEGGA----------------------VLLHRSR 38 Q9U943/40-578 66.5% 8.4% NTKSSTV-----------------------SEVDVFGICPTNVRHSQRGDV----------------------TVISKTR 39 Q9NDS1/42-586 67.3% 8.8% IPSLSTVSS-----------------GMTVTETDVVGKCPTTYQIETEGEK----------------------VIVVKEK 40 Q9GSG2/42-585 67.2% 8.8% LPSNSTINS-----------------GQNITETDVVGKCPTRYEVQDHGDT----------------------VIMIKEK 41 Q94907/43-573 65.0% 9.3% IEAEH--------------------------EVDVFGMCPTHTSTSKVGNAN----------------------IITKAR 42 Q9VLA0/86-645 65.9% 8.7% MMRFDVDAN--------------------TTETDVSGQCQVQYALEDTDSSYVT---------------------IRKTK 43 178812/46-598 67.8% 10.1% PETEEAK--------------------QVLFLDTVYGNCSTHFTVKTRKGNVAT--------------------EISTER 44 Q9NDN7/26-625 73.2% 11.8% ESVLKQVHHHP--------------HSFVIKEHSIYGHFDVDYTIKPHQN-------------------------EIEVH 45 Q9VF21/28-475 54.8% 7.0% MKSSG---------------------AFVVDELGIHGTCRTEYFVSNRTNYIS----------------------IRKTP 46 Q9U785/36-565 65.5% 7.8% FDENKD----------------------KVEETDFSGTCPTEYRKIRSDDDNT--------------------VVMEKRK 47 Q9VIH3/38-567 64.9% 7.7% LDASQE------------------------EELDVSGLCRVSYNVKSSTKVEKT--------------------KRDCSL 48 MTP_MESAU/28-5 66.4% 8.9% LSSG------------------------TTNEVDISGDCKVTYQAQQ--D------------------------KVVKTK consensus/100% ..................................h.G.h.s....................................p.. consensus/90% ...............................E.sh.G.h.s.a.h....t.........................h.+p. consensus/80% hpttp......................hth.E.sltG.Cps.Ythp...p.........................lhKot consensus/70% hptpp.....................haph.EsslpG.CpshYslp...p..h....................h.lhKop cov pid 241 : . . . . 3 . . 320 1 Q9U5D8/21-818 100.0% 100.0% NFSSSNRH--LVYRYGFNGHEG-WDAGTNQMGNFLSRTSQSRIILSG----------------KLNRFTIQSSVTTEKVL 2 Q9U5D7/21-774 94.4% 55.6% NFSNSDHH--IVYRYGMSGHEG-WSEGSNTMGNLLARTSESIIVLSG----------------KYNRYTIQSSWTTEKVL 3 Q9U5D6/22-808 98.0% 52.1% NFSSSDYH--IVYRYGMNGHEG-WTAGTNQMGNMLSRSSTSRIVITG----------------ALNKYTIQYSDTIEKVL 4 O02024/20-789 95.7% 49.9% NFSNSNQH--VIYRFGSSGHEG-WEAGTNQMGDFLSRSSQSRVILSG----------------KLNRYTIQSAVTTEKVL 5 Q17083/21-790 95.6% 42.7% NFSNCEQR--MGYHFGITGETD-WEAGSNSMGDFLAKSSVSRVVISG----------------SLDRYTIQSSVTTNKIV 6 O17428/22-746 89.7% 34.1% NYSNCEQR--SGYHFGIPGTNK-WEPSSGASGNFLSRSSVSRVIVTG----------------NLKSFTIQSSVSTNKVI 7 VIT1_AEDAE/95- 98.0% 34.8% NFDRCDQR--MGYHFGFTGYSD-FRPNTNQMGNVASKSLVSYMYLTG----------------NWYNFTIQSSSMINKVA 8 Q9NAW9/41-851 97.4% 33.7% NFDHCEQR--MGFHFGFSGFSD-FKPNTNQMGNIMTKSEVTQMYLTG----------------NWYNYTIQSVSTVNKVV 9 VIT_ANTGR/23-7 88.0% 30.1% NYTNARDR--PSYHYGFGEIEE-SEPTANKMGQFFIRQSNSRAILTG----------------KPSRYIIQSTYTVNKIM 10 Q9U5F1/33-832 97.1% 32.9% NYDNCKLR--SAYNFGFNQVPASWKPGTNGMENSPVRSTVTNAIMTG----------------KRQRYNLESVETVNEVI 11 Q9U8M0/20-767 92.9% 31.7% NFSNCKRR--PAVHYGLAGIPD-LEPGQNQMGDFLARSSVSRVVISG----------------TLNKFTVQSSVTTNQVV 12 BAB32673/21-77 92.9% 32.5% NFTDCKKL--PSYVHGFYNFHN-VFPAQNKAG-FMSRSQQTRTIVSRNK--------------ETGRFTIRSSVTFHEVV 13 O76823/23-734 87.7% 25.1% QFTNCRHN--SAYKLHFNAFEY-FHLKQHKPETFLSNSAVSRVIADGD---------------NLKNFTFYSGETIHKIV 14 Q9GR96/33-742 87.5% 22.3% NISHCNS---HLFHLKFSGFEH-FTDRMNN-GGFISNNVVTRMVVDS----------------VENNLTVIASNTVHKVI 15 VIT_BOMMO/34-7 87.8% 23.6% NYGHCHHR--VAYHFGVPVGAEWTGTAHKTQEQQLIGRATYSRILTG----------------KEG--PIYKAETTSTVH 16 Q9GUX5/30-740 87.7% 23.2% NYGHCHHR--VAYHFGVPEGAEWTGTAHKPNEHQFISRATVFRILAG----------------KQG--PIYKAETTSTVQ 17 Q25269/30-712 84.3% 20.2% NYNRCHQC--IIYNFGVPRGALWTGIAHGNTEKQFISHTTVSRILVG----------------HQG---IYNTETTSSVN 18 VIT_ACITR/17-5 70.1% 9.4% DLNNCNEK--IKMDIGMA-YSHTCSNCRKIRKNTRGTAAYTYILKPT----------------DTGTLITQATSQEVHQL 19 VTA2_XENLA/24- 70.1% 10.6% DFNNCQDK--VSKTIGLE-LAEFCHSCKQLNRVIQGAATYTYKLKGR----------------DQGTVIMEVTARQVLQV 20 I50441/24-594 70.1% 9.6% DLNNCQEK--VQKSIGMA-YIYPCPVDVMKERLTKGTTAFSYKLKQS----------------DSGTLITDVSSRQVYQI 21 JC4956/24-592 70.1% 9.2% DLNNCQQR--IMKDFGLA-YTEKCVECRQRGEALMGAATYNYLMKPA----------------DNGALILEATVTELHQF 22 Q9W6I2/24-592 70.1% 9.9% DLNQCQER--IMKDVGLA-YTERCAECTERVKSLIETASYNYIMKPS----------------AAGVLIAEATVEEVHQF 23 AAK15158/24-59 70.1% 10.0% DLNNCQEK--IVKDLGLA-YTEKCIECQKEAKNLRGAAAYNYVLKPV----------------PTGVLILQATVNELIQF 24 VIT1_FUNHE/22- 70.1% 10.8% DLSNCQER--LNKDIGLA-YTEKCDKCQEETKNLRGTTTLSYVLKPV----------------ADAVMILKAYVNELIQF 25 VIT2_FUNHE/24- 70.2% 11.0% DLNHCTDS--IHMDVGMAGYTEKCAECMARGKTLSGAISVNYIMKPS----------------ASGTLILEATATELLQY 26 AAK15157/25-59 70.1% 10.9% DLNHCQEL--IHKDIGLA-YTEKCVQCQARGMALKGAVAINYILKPA----------------ATGALLLEATATELIQF 27 Q9YGK0/24-592 70.1% 11.1% DLNHCQEK--IMKAIGLE-HVEKCHDCEARGKSLKGTASYNYIMKPA----------------PSGSLIMEAVAREVIEF 28 VIT1_CHICK/24- 70.1% 10.9% DLNSCEEK--VQVVTGSA-YTQPCQTCQQRNKNSRATATYNYKIKYT----------------HNEAVITQAEVEEVHQF 29 VIT_ICHUN/18-5 70.3% 10.9% DLNNCDHK--VYKTMGTA-YAERCPTCQKMNKNLRSTAVYNYAIFDE----------------PSGYIIKSAHSEEIQQL 30 Q9DFT9/22-590 70.1% 8.5% DITNCQQP--ASLYRGMA-LAPEDKLSKQRGESVVSTVKHTYTVKST----------------ADGGQITKAFAQERQYF 31 VIT6_OSCBR/26- 74.2% 11.2% NFEKCSLR--PEIVYGRR-YAEECNECRERDEKFSSTVFFYNITGTP-EFL--------INSVELQSKHMFAPVTEQKQL 32 VIT6_CAEEL/34- 74.1% 9.5% NLDKCTRR--PYIHHVQTPVCKDCQQTLEQD-KMSSTVLNYNITGTSSSFL--------INSVELRSQHLFAPISEKHQL 33 VIT1_CAEEL/24- 73.2% 10.5% NFDKCTER--SEIAYGLR-YSSECPECEKDTVLIRPQTVYTYILENE-------------ELKESEVRSLYTVNVNGQEV 34 Q9N4J4/125-718 72.8% 9.9% NFDKCITR--PETAYGLR-FGSECKECEKEGQFVQPQTVYTYTFKNE-------------KLQESEVNSIYTLNVNGQEV 35 Q9U572/15-674 79.2% 12.1% FMEEDIQR--DAYSSS---YTTKTKSKTSSKTSSKTSSKTSSKTSKTGKT---------SPGQLANVPHIEDTLWSVRRT 36 Q9UAR3/16-714 82.6% 9.4% AMEEDIQR--EEQDESDRFTSSKVPSKTSKTQTSKTTKTTGTKTTGTKTTGTKNTGFKGAPAKLTTPERIDNTLWSMSRT 37 APLP_MANSE/39- 65.9% 9.3% DLSRCAHR--EQGRNDFVNSIANPDAGIKDLQVLQSMLNVESKVNNG---------------------VPEKVSAIEEYL 38 Q9U943/40-578 66.5% 8.4% NLNRCASR--ENLIQETLSTRFTGQSDLHATPFLDADLHVEQQIKGG---------------------LIVSATSRESYL 39 Q9NDS1/42-586 67.3% 8.8% NHRHCQQR--YPTPAETPAPWLKAP-----LPIEESKSECKQEITNG---------------------IYTSIMCHDKNI 40 Q9GSG2/42-585 67.2% 8.8% NHRQCKER--YHTPAENPAPWLRGP-----FITDESTCMCKQETRNG---------------------IYSAITCEDKNV 41 Q94907/43-573 65.0% 9.3% NLNSCSHR--EQINSGLVSGKVNEKAGITSSLLLQANYIKESRIVNH---------------------LIENVQLTETYK 42 Q9VLA0/86-645 65.9% 8.7% DINSCRQR--YATHSVLQTTPYTFRDDKTIWPILKSQSHCNLTIDNN---------------------VYKEIKCLETHL 43 178812/46-598 67.8% 10.1% DLGQCDRF--KPIRTGISPLALIKGMTRPLSTLISSSQSCQYTLDAK------------------RKHVAEAICKEQHLF 44 Q9NDN7/26-625 73.2% 11.8% KLHDMHDP--HHLYLNLFSNNEAGVCDMGYENPIMHNTKKQYRIVKQ-----------------DGHHVVKDIHSAGVVF 45 Q9VF21/28-475 54.8% 7.0% EVKTCKP------------YSEAVHTTRSNVPPNTCEFDHQKSVIIG---------------------------NEAIYG 46 Q9U785/36-565 65.5% 7.8% DLNLCDDRRVDLRQTPDQALGQLKEIIRHYMHPMDSDLMCRMTLKDK---------------------VVSEVDCEERHV 47 Q9VIH3/38-567 64.9% 7.7% WDLRVNYNPEEALGVTQQAQETVFYELSSEGTLLHAESQENHRLN------------------------LAAKPDVGSFV 48 MTP_MESAU/28-5 66.4% 8.9% ALDTCKIE-----RSGFTTVNQVLGVSS------KATSVTTYKIEDS---------------------FVTAVHAEETRD consensus/100% ...........................................h.................................... consensus/90% phppst......h..t.......h..t.........t.....hh..t......................h.t.......h consensus/80% shspCppp....hthsh..ht..h..s.t......sp..hp.hhhst.....................hh.s..p..p.h consensus/70% shspCpp+....hphGhs.htt.ht.sppp.t.hhupsthshhlhss..................t..hhpss.sptp.h cov pid 321 . . : . . . . 4 400 1 Q9U5D8/21-818 100.0% 100.0% IAPHIYNSQKGMVGSRVNLTLDDYSNFK-GSVPTISNP--KTVNNLVYEYEYG-KPQNGESSEESSSSSSSSSSSSSS-- 2 Q9U5D7/21-774 94.4% 55.6% VAPHLYNSQKGIVVSRLNLTLEDVSPLK-GDSPSVGNP--RTVNTLVYEYIHR-NTQNKDSGEGSSSSSSSSSSSSSS-- 3 Q9U5D6/22-808 98.0% 52.1% VSPHISNSQKGIAVSRVTLALQSVTPSP-GPSVTISQP--RIIEKIVYEYEHE-EAQSGRLTHPSTYSSESSSSSSSS-- 4 O02024/20-789 95.7% 49.9% VAPHVYNNQKGIVVSSMNITLQQATGSQ-GSPQSVSNP--REVKSLVYEYESQGNSENLQSSQQSSQQSSSEESSSSS-- 5 Q17083/21-790 95.6% 42.7% VSPNLKYSQKGMVVSRLNITLDSVNAAS-GSPRSPSEP--ESTGNLVYSYNSPFEANNKRRPHNNNDDDSSSSSSSSS-- 6 O17428/22-746 89.7% 34.1% LSPNFHENRKGMVSSRVNVTLVKIGAPSTGDWSTPANP--ESTGNLVYNYNNPFAG------------------------ 7 VIT1_AEDAE/95- 98.0% 34.8% IAPSLVNKEPALVYAQVNMTLNDVHPYDKVPMGPAEDL--KVFVDLVYSYNMPSDKKNYVRPGNETSSSSSSSSSSSS-- 8 Q9NAW9/41-851 97.4% 33.7% VSPSLVNSQKAMVYAQVNMTLNEITPYDKYPEGPADDR--QVFVDLVYSYNMAHDKNNFVRPANETDDSSSSSSSSSSDS 9 VIT_ANTGR/23-7 88.0% 30.1% VNPILKNKEMGSITSMVNVTLLEINNQQ-QQPEELSNP--LDIGNLVYTYGQPKNNQVHSKLNEN----LMED------- 10 Q9U5F1/33-832 97.1% 32.9% VSPNLYDRQKGHVVSSVNMILTDVRPTP-SSHPVVGEA--YTVNNLVYEYNAAAEDENLQSAYKNSMNKPAQINEPAD-- 11 Q9U8M0/20-767 92.9% 31.7% MSPEMYNSQKGLIVSRVNVTIKDIEEAR--PIPLPGNL--QDTGDLLYSYNNAHDIEPLQRDRQDSDFTLES--DSSS-- 12 BAB32673/21-77 92.9% 32.5% LKPELFNSQQGISVSRMNVTLEEIKSQQ--HIPPPRPP--KDVGDLVYRYS-AETGEPSQRD---SAYALESNSDSSS-- 13 O76823/23-734 87.7% 25.1% LNPEIYNKQKGMLVSHINVTVERKGREL--TVIDY-EL--RNVGDLSYSTSLVKAHSMRNSASMDLSSSSMSSSSSSS-- 14 Q9GR96/33-742 87.5% 22.3% LSPEYYNTQHAMTVSFMNVLS-RKSNQL--SLHPVSDP--RNVGDLVYLETLYERHDQQ---YLDSSYASASSSSSSS-- 15 VIT_BOMMO/34-7 87.8% 23.6% VHPHLYGKQKAEVYSHVHMELISVDQDSGAEWPRAGAM--RPAQSILYSLSTKQMTKHYE--------------SSSS-- 16 Q9GUX5/30-740 87.7% 23.2% VNPNLYGKQKAEVHSHVHIELESVEQDNQAEWEKPEGN--RLIKNFLYFMLTKQVGTHD---------------SSSS-- 17 Q25269/30-712 84.3% 20.2% VHPHIHGRQKAEVHSYIQMRLKSIEENPGTNWQKPEAT--RHVKSLLHSMLTKQVQNSY--------------------- 18 VIT_ACITR/17-5 70.1% 9.4% TPFNEMTG-AAITEARQKLVLEDAKVIH--VTVPEQEL--KNRGSIQYQFASE--------------------------- 19 VTA2_XENLA/24- 70.1% 10.6% TPFAERHG-AATMESRQVLAWVGSKSGQ--LTPPQIQL--KNRGNLHYQFASE--------------------------- 20 I50441/24-594 70.1% 9.6% SPFNEPTG-VAVMEARQQLTLVEVRSER--GSAPDVPM--QNYGSLRYRFPAV--------------------------- 21 JC4956/24-592 70.1% 9.2% TPFNEMSG-AAQMEAKQMLTFVEIKKDP--IIVPDNNY--VHRGSIRYEFATE--------------------------- 22 Q9W6I2/24-592 70.1% 9.9% SPFNEIHG-AAQMEAKQTLAFVEMEKTP--IVPIKADY--LARGSLQYELSTE--------------------------- 23 AAK15158/24-59 70.1% 10.0% SPFNELNG-AAQMNTKQSLVFLEIQKTP--IAPVNAQY--LHRGSIKYEFASE--------------------------- 24 VIT1_FUNHE/22- 70.1% 10.8% SPFSEANG-AAQMRTKQSLEFLEIEKEP--IPSVKAEY--RHRGSLKYEFSDE--------------------------- 25 VIT2_FUNHE/24- 70.2% 11.0% SPVNIVNG-AVQMEAKQTVTFVDIRKTP--LEPLKADY--IPRGSLKYELGTE--------------------------- 26 AAK15157/25-59 70.1% 10.9% SPFNILNG-AAQMEAKQLLTYVGISKTP--VLPIAAAY--ISRGSLQYEFATE--------------------------- 27 Q9YGK0/24-592 70.1% 11.1% SPFNILNG-AAQMESKQILTFLDIENTP--VDHARYTY--VHRGSLQYEHGSE--------------------------- 28 VIT1_CHICK/24- 70.1% 10.9% TPFHEITGGNAIVEARQKLALIEVQKQV--AEVPPKEF--QKRGSLQYQFGSE--------------------------- 29 VIT_ICHUN/18-5 70.3% 10.9% SVFDIKEG-NVVIESRQKLILEGIQSAP--AASQAASL--QNRGGLMYKFPSS--------------------------- 30 Q9DFT9/22-590 70.1% 8.5% SPFNVKGG-NFRMLALRDIELLKVSDTT--DKVVTGQV--QSRGNLMYKTNKD--------------------------- 31 VIT6_OSCBR/26- 74.2% 11.2% ITARITNRLELVYSGEQKEQIEAVRNSD--KKENLLYN--PEHEIAEEKFAQT--------------------------- 32 VIT6_CAEEL/34- 74.1% 9.5% VSAFTLNTMELIYAGEKKTEIKQVRN-E--KTSELVYN--QESEWAEQQWAQT--------------------------- 33 VIT1_CAEEL/24- 73.2% 10.5% MKTETRSKLVLEENHSIKSHIEKVNG----EKESIIYS--SRWEQLVEDFFKN--------------------------- 34 Q9N4J4/125-718 72.8% 9.9% VKSETRAKVTFVEESKINREIKKVSG----PKEEIVYS--MENEKLIEQFYKQ--------------------------- 35 Q9U572/15-674 79.2% 12.1% TDFDMCENLVSLQIHSSKYTEDIIQRSSVASYLIRGDT-HRRIEQVVVEGTITVLTN----------------------- 36 Q9UAR3/16-714 82.6% 9.4% VDFDSCEDLVKWRIHGNKKIDKKIQRTSIGTYLLRGNARDTRVEYAVIEGSITVFTG----------------------- 37 APLP_MANSE/39- 65.9% 9.3% YKPFSVGENGARAKVHTKLTLSGK-GGAG--GGNAHCT--ESRSIIFDVPHGT--------------------------- 38 Q9U943/40-578 66.5% 8.4% FRPFSNQGNGAKTIVETKLTLTSQNAQPA--PPLASFT--VPKSIVFEAPHAL--------------------------- 39 Q9NDS1/42-586 67.3% 8.8% VRPAIGIYKYVEANQESTLHFISETTDTSAITAIPRGE--MHIESLLYNHET---------------------------- 40 Q9GSG2/42-585 67.2% 8.8% VKPSYGAYKYVEAKMMSTLKYLSESSEHS--SDILEGN--MVRKSLLYDYHTP--------------------------- 41 Q94907/43-573 65.0% 9.3% FIGNTKRNSDISAKVVTILKLKNPSGTK---ANSPGTG--STVRSLIFQRPET--------------------------- 42 Q9VLA0/86-645 65.9% 8.7% LVPFSNASSGALTTSTSRLKLDGVESYSAGEFLEQNPELVERRATLVFDHTP---------------------------- 43 178812/46-598 67.8% 10.1% LPFSYKNKYGMVAQVTQTLKLEDTPKIN---SRFFGEG--TKKMGLAFESTKS--------------------------- 44 Q9NDN7/26-625 73.2% 11.8% YYPFKGQSDHQFIFVNQSMHLTQMVP----IQEQFHIQSEHFENHLTYHSFET--------------------------- 45 Q9VF21/28-475 54.8% 7.0% MSPHNETG--------YYLSMAHAKG-------TT----------LIHTFESTG-------------------------- 46 Q9U785/36-565 65.5% 7.8% LVHRSHKP---IHLSYVKMMLKQSKDGVAADLGQTDSE--PKRPYLSFDHKHKN-------------------------- 47 Q9VIH3/38-567 64.9% 7.7% KSSLILQHVSQGSEEVKQLQLGSLDK-----AIQS-----LLEWYRVFELESDVDG------------------------ 48 MTP_MESAU/28-5 66.4% 8.9% FSLNFLQAIAGKIVSKQKLELKTTEAGP---RMVPGKQVAGVIKALDSKYTAIP-------------------------- consensus/100% .............................................h.................................. consensus/90% ......tt..........h.h.t.t....................h..p............................... consensus/80% h..p.htt..h.h.st.phth.phpt................httl.aphtt............................ consensus/70% hs.phhst.ts.h.up.plpl.phptt........tt....phtsLhaphtpt........................... cov pid 401 . . . . : . . . 480 1 Q9U5D8/21-818 100.0% 100.0% -------SESSSSSSDESNWNQSLRKPASATSTGSLSSSSSSVSSSSSSSEETNYNGGLKRKTRSVTPPPHSSSS----- 2 Q9U5D7/21-774 94.4% 55.6% -------SSSSSSSSE-----------------G----SS---QSGSSSSEEQQAAMNIKQSKRTIR------------- 3 Q9U5D6/22-808 98.0% 52.1% -------SSSSDSSAE----------------NGSSGSDSSDASSSSSSSSKEYSNAQMNRKDKPMMKSKWQPIS----- 4 O02024/20-789 95.7% 49.9% -------SSSSSSSSE------------------------E--NMNSMKTNQQMKEDRAKRIRRSLEE------------ 5 Q17083/21-790 95.6% 42.7% -------SSSSSSSSS-------------------SSSSSSEEDQQRGNSENKNNNQHGHRQARAANQ------------ 6 O17428/22-746 89.7% 34.1% ------------VG----------------------------EDRRASRPQDNRNSEEKVRSLYNLYR------------ 7 VIT1_AEDAE/95- 98.0% 34.8% -----SSSESSSSSSES----------------VENPKISPVEQYKPLLDKVEKRGNRYRRDLNAIKEKKYYEAYKMDQY 8 Q9NAW9/41-851 97.4% 33.7% DSDSSSSSDSSSSSSEEE---------------AENFKISTAEQYKKQAKEVERRGNRNRRDLNAFKEKQYYEAYKRDQY 9 VIT_ANTGR/23-7 88.0% 30.1% ------------SSSE-------------------------------ESSEQEMTHRRFRRSANSLT------------- 10 Q9U5F1/33-832 97.1% 32.9% -------RKPRSVQDRR----------------RLLAKNFNVNENILSQSSSVNSSESLKSDVSDKWSALWTGSK----- 11 Q9U8M0/20-767 92.9% 31.7% -------SSSSSSSDE----------------------NSWSRDSHSRISEENKKAQIKQQRIKANRH------------ 12 BAB32673/21-77 92.9% 32.5% -------SSSSSSSEE----------------------NAANSRHRSSSSSSSSRSSEEMRDSKKHPR------------ 13 O76823/23-734 87.7% 25.1% --------SSSSSSSS------------------------SSSSSSSSEEHHSHNQKLSKKRQVPLPRPLF--------- 14 Q9GR96/33-742 87.5% 22.3% --------RSRSSSSE------------------------SSEETDSINIRNRENKQRSPRAISQKKR------------ 15 VIT_BOMMO/34-7 87.8% 23.6% --------SSSSESHEFN--------------------------FPEQHEHPHQSNQRSRRSYMRSKL------------ 16 Q9GUX5/30-740 87.7% 23.2% --------SSSSESHDH----------------------------SQINEEPRQRSLHSMAASKVGAI------------ 17 Q25269/30-712 84.3% 20.2% --------QASSESNEE-------------------------------TEGSTYTAQQPYEAYDG--------------- 18 VIT_ACITR/17-5 70.1% 9.4% ------------------------------------------------------ILQTPIQLFKTR-------------- 19 VTA2_XENLA/24- 70.1% 10.6% ------------------------------------------------------LHQMPIHLMKTK-------------- 20 I50441/24-594 70.1% 9.6% ------------------------------------------------------LPQMPLQLIKTK-------------- 21 JC4956/24-592 70.1% 9.2% ------------------------------------------------------ILQMPIQLLKIS-------------- 22 Q9W6I2/24-592 70.1% 9.9% ------------------------------------------------------ILQTPIQLMKIS-------------- 23 AAK15158/24-59 70.1% 10.0% ------------------------------------------------------LLQTPITLIKIT-------------- 24 VIT1_FUNHE/22- 70.1% 10.8% ------------------------------------------------------LLQTPLQLIKIS-------------- 25 VIT2_FUNHE/24- 70.2% 11.0% ------------------------------------------------------FLQTPIQLLRIT-------------- 26 AAK15157/25-59 70.1% 10.9% ------------------------------------------------------LLQTPIQLLRIT-------------- 27 Q9YGK0/24-592 70.1% 11.1% ------------------------------------------------------ILQTPIHLLRVT-------------- 28 VIT1_CHICK/24- 70.1% 10.9% ------------------------------------------------------LLQLPVHLFKIK-------------- 29 VIT_ICHUN/18-5 70.3% 10.9% ------------------------------------------------------AITKMSSLFVTKGK------------ 30 Q9DFT9/22-590 70.1% 8.5% ------------------------------------------------------LKPIPVVMLNLN-------------- 31 VIT6_OSCBR/26- 74.2% 11.2% ------------------------------------------------------GDEEVSSSYSQLRR------------ 32 VIT6_CAEEL/34- 74.1% 9.5% ------------------------------------------------------GEEKYLRQLPQWTE------------ 33 VIT1_CAEEL/24- 73.2% 10.5% ------------------------------------------------------GDKAEFAPFEKFPL------------ 34 Q9N4J4/125-718 72.8% 9.9% ------------------------------------------------------GDKAEVNPFKAIEI------------ 35 Q9U572/15-674 79.2% 12.1% ---------------------KE----------------------QHEHVDTFTNQTLELKAVREVGE------------ 36 Q9UAR3/16-714 82.6% 9.4% ---------------------TQ----------------------SHEHISTFTNQTLELKRVRRIQN------------ 37 APLP_MANSE/39- 65.9% 9.3% --------------------------------------------------------------SSAS-------------- 38 Q9U943/40-578 66.5% 8.4% --------------------------------------------------------------ASVP-------------- 39 Q9NDS1/42-586 67.3% 8.8% --------------------------------------------------------------MKDP-------------- 40 Q9GSG2/42-585 67.2% 8.8% --------------------------------------------------------------KKDP-------------- 41 Q94907/43-573 65.0% 9.3% --------------------------------------------------------------YTS--------------- 42 Q9VLA0/86-645 65.9% 8.7% -------------------------------------------------------------AVKPS-------------- 43 178812/46-598 67.8% 10.1% --------------------------------------------------------------TSPP-------------- 44 Q9NDN7/26-625 73.2% 11.8% ------------------------------------------------------SQDGSIHDVTNGR------------- 45 Q9VF21/28-475 54.8% 7.0% -------------------------------------------------------------------------------- 46 Q9U785/36-565 65.5% 7.8% -------------------------------------------------------------------------------- 47 Q9VIH3/38-567 64.9% 7.7% ----------------------------------------------------------MISAIKEQ-------------- 48 MTP_MESAU/28-5 66.4% 8.9% ------------------------------------------------------IVGQVLQSACQG-------------- consensus/100% ................................................................................ consensus/90% ................................................................................ consensus/80% ..............................................................hp................ consensus/70% ........................................................t..hp.hp................ cov pid 481 . 5 . . . . : . 560 1 Q9U5D8/21-818 100.0% 100.0% --------SSESSSASSSSSSSSDE---------------SSNSPIRQGASSSSSSSSSS-ESSSISSSEE--YLSRQP- 2 Q9U5D7/21-774 94.4% 55.6% ---------SASWNQT--------------------------KILMKQQSSDSSSSSSSS-SDSSISSSEE--YLETAP- 3 Q9U5D6/22-808 98.0% 52.1% --------AAEWIIKKQPSSSSERK---------------IKESQSRRSSSSSSSSSSSSSEDSSISSSEE--HLAPQP- 4 O02024/20-789 95.7% 49.9% --------QQSSINRKGKNARSQAD---------------SSSSSSSSSSSSSSSSSSSSDSSSSVSSSEE--NLPRQPR 5 Q17083/21-790 95.6% 42.7% ---------RGQGNQDSDSSSS--------------------SSSSSSSSSSSDSSSSSSSESDSLSSSEE--YWQSRP- 6 O17428/22-746 89.7% 34.1% ---------RNRINDNDDDSSA--------------------SDSSKS--------------AKSLESNEEQLYWQPKP- 7 VIT1_AEDAE/95- 98.0% 34.8% RLHRLNDTSSDSSSSDSSSSSSSESKEHRNGTSSYSSSSSSSSSSSSSESSSYSSSSSSSSESYSISSEEY--YYQPTPA 8 Q9NAW9/41-851 97.4% 33.7% RLRKQNDTSSDSSSSDDSSSSS--S------------------SSSSSESDEHDFYSSSESDSDSLSSEE---FYQPIPE 9 VIT_ANTGR/23-7 88.0% 30.1% ---------KQWR--------------------------------ESS---------------EEWNQQQQ----QPRP- 10 Q9U5F1/33-832 97.1% 32.9% --------SSSSSNEFGDFSSS-------------------SSSSSSSSSSSSSSSSDSSSSEKSDNRKQREQLWQTEP- 11 Q9U8M0/20-767 92.9% 31.7% ---------SDDDVTNDEISFA---------------------SRERQRRSRTRRSIRNDDSSSSSSSSEE--DYQPRP- 12 BAB32673/21-77 92.9% 32.5% ---------ASTTESQPRNSRS---------------------RRSLQNSKRSINMYNDSSSSSSSSSSEE--YLLPRP- 13 O76823/23-734 87.7% 25.1% ---------EANFDASSG---------------------------LTTEQPVTFRPRRQLFQGQDMSEEET----EQNPE 14 Q9GR96/33-742 87.5% 22.3% ----------MALMQELG---------------------------LTTPLPYPRRLRSISLSAESSSSSSS----RSSPE 15 VIT_BOMMO/34-7 87.8% 23.6% -----------VTVHKV----------------------------LKK---------RNSESSSGSSSSS----ADSSST 16 Q9GUX5/30-740 87.7% 23.2% -----------QNFITR----------------------------QMK---------RNDESSSSSSSSSS--SSDSSSA 17 Q25269/30-712 84.3% 20.2% ---------------------------------------------------------CYYESSSYLDSSN---------- 18 VIT_ACITR/17-5 70.1% 9.4% -------------------------------------------------------------------------------- 19 VTA2_XENLA/24- 70.1% 10.6% -------------------------------------------------------------------------------- 20 I50441/24-594 70.1% 9.6% -------------------------------------------------------------------------------- 21 JC4956/24-592 70.1% 9.2% -------------------------------------------------------------------------------- 22 Q9W6I2/24-592 70.1% 9.9% -------------------------------------------------------------------------------- 23 AAK15158/24-59 70.1% 10.0% -------------------------------------------------------------------------------- 24 VIT1_FUNHE/22- 70.1% 10.8% -------------------------------------------------------------------------------- 25 VIT2_FUNHE/24- 70.2% 11.0% -------------------------------------------------------------------------------- 26 AAK15157/25-59 70.1% 10.9% -------------------------------------------------------------------------------- 27 Q9YGK0/24-592 70.1% 11.1% -------------------------------------------------------------------------------- 28 VIT1_CHICK/24- 70.1% 10.9% -------------------------------------------------------------------------------- 29 VIT_ICHUN/18-5 70.3% 10.9% -------------------------------------------------------------------------------- 30 Q9DFT9/22-590 70.1% 8.5% -------------------------------------------------------------------------------- 31 VIT6_OSCBR/26- 74.2% 11.2% -------------------------------------------------------------------------------- 32 VIT6_CAEEL/34- 74.1% 9.5% -------------------------------------------------------------------------------- 33 VIT1_CAEEL/24- 73.2% 10.5% -------------------------------------------------------------------------------- 34 Q9N4J4/125-718 72.8% 9.9% -------------------------------------------------------------------------------- 35 Q9U572/15-674 79.2% 12.1% ---------------------------------------------------------PITVTYDVHPHYDWQYDIER--- 36 Q9UAR3/16-714 82.6% 9.4% ---------------------------------------------------------LFSFDYETVTHQSFHFEVDKFDV 37 APLP_MANSE/39- 65.9% 9.3% -------------------------------------------------------------------------------- 38 Q9U943/40-578 66.5% 8.4% -------------------------------------------------------------------------------- 39 Q9NDS1/42-586 67.3% 8.8% -------------------------------------------------------------------------------- 40 Q9GSG2/42-585 67.2% 8.8% -------------------------------------------------------------------------------- 41 Q94907/43-573 65.0% 9.3% -------------------------------------------------------------------------------- 42 Q9VLA0/86-645 65.9% 8.7% -------------------------------------------------------------------------------- 43 178812/46-598 67.8% 10.1% -------------------------------------------------------------------------------- 44 Q9NDN7/26-625 73.2% 11.8% -------------------------------------------------------------------------------- 45 Q9VF21/28-475 54.8% 7.0% -------------------------------------------------------------------------------- 46 Q9U785/36-565 65.5% 7.8% -------------------------------------------------------------------------------- 47 Q9VIH3/38-567 64.9% 7.7% -------------------------------------------------------------------------------- 48 MTP_MESAU/28-5 66.4% 8.9% -------------------------------------------------------------------------------- consensus/100% ................................................................................ consensus/90% ................................................................................ consensus/80% ................................................................................ consensus/70% ................................................................................ cov pid 561 . . . 6 . . . . 640 1 Q9U5D8/21-818 100.0% 100.0% EINEVPKIEFLPDQMVN-----FRSESGHTVDNIVKVARQIGKFLEY----PSNIPKDNVLTYYSLLPHLIAAANSKQLE 2 Q9U5D7/21-774 94.4% 55.6% DLKSAPFIQFAPDDAASP----NQKEGEQVVERMVRLARQMALSFNN----PSEMYKQDPLVQYLIMSRTASIASYEQLQ 3 Q9U5D6/22-808 98.0% 52.1% AMNESPTIEFLPDNMVS-----VSSQKSQVVEKMVNVAKRIGETILE----PNRIIDENILTSFSILARLVSGANSQQLQ 4 O02024/20-789 95.7% 49.9% SIEQAPGSELQAGYYMGS----MGQQKQNVPEQIKSLAKKVGQWVQN----PGQIPEENRLPLFSMLTRMVQNANSQQLE 5 Q17083/21-790 95.6% 42.7% TLTDAPEAPMLPLFIGYKGSAAQQSSQVNPVSVAKKLASQIGEELQK----PSNIPKQNTLEKFSHLAALLRTMSAKQIE 6 O17428/22-746 89.7% 34.1% TLNEAPAMAMLPFFIGNHGKSIHKTDEIEPITMAKTLASQIGSDFQD----PNSITDEQTLEKFTLLVRIIRTMSTQQIA 7 VIT1_AEDAE/95- 98.0% 34.8% NFSYAPEAPFLPFFTGYKGYNIFYARNVDAIRSVGKLVEEIASDLEN----PSNLPKANTMSKFNILTRAIRAMGYEDIY 8 Q9NAW9/41-851 97.4% 33.7% SMKDAPQTPFLPYFTGYKGYSVQYAHNVDASRYAYKLAYEIADELQE----ISQVPKSNTLNKFTILARVLRTMHYQDIY 9 VIT_ANTGR/23-7 88.0% 30.1% QLTRAPHSPLLPSMVGYHGKSIKENKDFDIRQNVENLVTEISDEIKQ----SEKTISKHTLDKYTILNTLVRLMDEDDIQ 10 Q9U5F1/33-832 97.1% 32.9% TLLTAPQIPFLPLYIANKGNSIVSSNSSKTYDNVVKLANEMGEEIVQD---ASSMSGLNTVEKFALLSYIIGTLNARTIE 11 Q9U8M0/20-767 92.9% 31.7% LRGQPPNIPLLPFFVGNRGNAAFLLSSDDPAEIVKSLAEEIKSDMKK----PAYIPERSTHAKLMMMRDIVRTMTAKQLQ 12 BAB32673/21-77 92.9% 32.5% HIENAPNIPFMPYFVGNQGSK---IGEVDPEKIVL-LARTISSELQE----PDTMVKKNILSRFSILTNLVRAASFSQLE 13 O76823/23-734 87.7% 25.1% IIP-------ANLLPTYNLIHNTKQVDVDPVGVAVRLSKDIAADLQGE---PRVGEDRHILPRFTILVRLLKQLKVSQIM 14 Q9GR96/33-742 87.5% 22.3% ISRERNPRYIKDEENTFLPLTHVLRSDVDPVKAVVQLANDIGHDLID----PDSLPDKDTITKFIIMVRVLRNLQLSEIL 15 VIT_BOMMO/34-7 87.8% 23.6% YINDDIPDIDEPAYAALYMSPQPHADKKQNAMNAQKILQDIAQQLQN----PNNMPKSDFLSKFNILVRLIASMSTEQLS 16 Q9GUX5/30-740 87.7% 23.2% YINDEIPNFNEPANAALYMSPQTDTDKKQNSVNAQKLLQDKAQELQN----PNNMPKSDFLSKLNILVRLLAAMTTEQLS 17 Q25269/30-712 84.3% 20.2% FVNNEQLKYNVPDYAAILLHTQPHVDKKQNAMSAQKLLQDLAQQLQN----PSTMPQNEFLTKFNILVRLISTMTTDQLA 18 VIT_ACITR/17-5 70.1% 9.4% ------------------------SPETKIKEVLQHLVQNNQQQVQSDA-----------PSKFLQLTQLLRACTHENIE 19 VTA2_XENLA/24- 70.1% 10.6% ------------------------SPEAQAVEVLQHLVQDTQQHIREDA-----------PAKFLQLVQLLRASNFENLQ 20 I50441/24-594 70.1% 9.6% ------------------------NPEQRIVETLQHIVLNNQQDFHDDV-----------SYRFLEVVQLCRIANADNLE 21 JC4956/24-592 70.1% 9.2% ------------------------NARAQAVKILNHLVTYNTAPVHEDA-----------PLKFLQFIQLLRMASSETIN 22 Q9W6I2/24-592 70.1% 9.9% ------------------------DARAQITEVLKHIVENNVAMVHDDA-----------PLKFVELIQLLRAATLENTE 23 AAK15158/24-59 70.1% 10.0% ------------------------NPQAQIVELLNHLVINNMQTVHEEA-----------PIKFLELIQVLRKSNIADID 24 VIT1_FUNHE/22- 70.1% 10.8% ------------------------DAPAQVAEVLKHLATYNIEDVHENA-----------PLKFLELVQLLRIARYEDLE 25 VIT2_FUNHE/24- 70.2% 11.0% ------------------------NVEAQIVESLNNLVSLNMGHAHEDS-----------PLKFIELIQLLRVAKYESIE 26 AAK15157/25-59 70.1% 10.9% ------------------------NAEAQIVEVLNHLVTYNVAKVHEDA-----------PLKFVELIQLLRVVSYERVD 27 Q9YGK0/24-592 70.1% 11.1% ------------------------HAEAQIVSTLNHLVASNVAKVHEDA-----------PLKFVELIQVMRVARFETIE 28 VIT1_CHICK/24- 70.1% 10.9% ------------------------DVERQIEERLQDLVETTYEQLPSDA-----------PAKALKLMHLLRAANEENYE 29 VIT_ICHUN/18-5 70.3% 10.9% ------------------------NLESEIHTVLKHLVENNQLSVHEDA-----------PAKFLRLTAFLRNVDAGVLQ 30 Q9DFT9/22-590 70.1% 8.5% ------------------------DPVPKILDLIKRLAQANIYHVDSET-----------STEILDLIQLMRVTTLDNLE 31 VIT6_OSCBR/26- 74.2% 11.2% ------------------------SGRNHPSAAEPSLQADRANRAREQPRPRKILLVNYQPCIQARLVKSLRFATEDNLS 32 VIT6_CAEEL/34- 74.1% 9.5% ------------------------N-KVEMIKKMFSLMAKQIEQGEAELEA---------PHTVARIVKVLRECNEEQLE 33 VIT1_CAEEL/24- 73.2% 10.5% ------------------------DKKMHLIKTITEQIQEVENNIPET------------SHFLARLVRIFRTTSTSQLK 34 Q9N4J4/125-718 72.8% 9.9% ------------------------EQKVEQLEEIFRQIQEHEQNTPET------------VHLIARAVRMFRMCTIEELK 35 Q9U572/15-674 79.2% 12.1% ----PQGDQFIPLEQVLTGRPVTDQIVNSIMEYIKKTVDDLSHRMEHYP-----AKPENLAYIIGRLVEAVANLDYPYIQ 36 Q9UAR3/16-714 82.6% 9.4% SEQEPGHDIHPSLEQLVTGIRITTQGVTEIKTLIIRLLKMLVKRTTTHP-----YSTDPLVKDMSTLVDAASILSRPEIE 37 APLP_MANSE/39- 65.9% 9.3% ------------------------GNLNSVISAVKETARTVANDASSKS-----------AGQFAQLVRIMRTSSKDDLM 38 Q9U943/40-578 66.5% 8.4% ------------------------GGSSAITAALHAAESSTKDGVTVDA-----------AEKFRTLVSVLRQSSTTDIL 39 Q9NDS1/42-586 67.3% 8.8% ------------------------ELAPELDQLMKEICEKTKDTVEAEA-----------AALVAKALHLLRRVPETVVV 40 Q9GSG2/42-585 67.2% 8.8% ------------------------SMVTQLDRIMSQICRKTRDNVERDV-----------AALVARAIQFLRMVPEEAVE 41 Q94907/43-573 65.0% 9.3% ------------------------KNINALKTILSDLVDSTGDYVKKET-----------AKKFVEFIRLLRQSDSETLL 42 Q9VLA0/86-645 65.9% 8.7% -----------------------HDEIKAARELLVEMCRVGFPNIQR-----------EFIDVFTNFLQTSKSLDYKTLS 43 178812/46-598 67.8% 10.1% ------------------------KQAEAVLKTLQELKKLTISEQNIQR-----------ANLFNKLVTELRGLSDEAVT 44 Q9NDN7/26-625 73.2% 11.8% ----------------------HVVNYEKLIPNIQHMLSDIHSYLNEDHIHTRE-PDSKRGQMVNRVQRLLQFFSLTKLE 45 Q9VF21/28-475 54.8% 7.0% ------------------------------------------------------------EAQFINSELLLNFLNETPID 46 Q9U785/36-565 65.5% 7.8% ------------------------PTETDVVQVLKKLCTEITEPQAS----------IETSFTFHKLVDKLRYLSAEETA 47 Q9VIH3/38-567 64.9% 7.7% ------------------------TLEDQLKASLTELQSADVGKSS-------------LALAYVKLIPLARITRQEQFE 48 MTP_MESAU/28-5 66.4% 8.9% ----------------------CPSLAEHWQSIRKHLEPENLSNAKA-------------VSSFLAFIQHLRTARREEIL consensus/100% .......................................................................t......h. consensus/90% ............................t....h.ph.......h..................h..h.thht..p.ptl. consensus/80% ........................t...p..p.h.plhpt..tphpp...............hh..hhphhp.hs.pplt consensus/70% ........................s.ptphhphhtclspp.hpphpp..............tpah.LhpllRhhshpplp cov pid 641 : . . . . 7 . . 720 1 Q9U5D8/21-818 100.0% 100.0% QATEKLYYPEERIQGSTN---KEVYHYYRSWQVYRDAVAQAGTGPALVTIYSWLKS--AKVRENEGAQLLAVLPKAARYP 2 Q9U5D7/21-774 94.4% 55.6% EATEKLYYSEEKLSGGK----PESYQSYRAWQAYRDGVARAGTGPALVAMSSWIKS--GKVHGNEAAHLLSVLPRTARFP 3 Q9U5D6/22-808 98.0% 52.1% QAVDRMYYSETNVQGLGSGEGTSVYQNKQGWVAFRDAIANAGTGPALVTIRALIDS--GKLKGEEAAEVLATLPSAARYP 4 O02024/20-789 95.7% 49.9% QVTQSLYHQQSKNQQQS----DAERQQYQSWAAFRDAVAQAGTGPALVTIKQWIQS--KKVQGEEAAQLLAVLPYTARYP 5 Q17083/21-790 95.6% 42.7% QAAHDMYAPAKENASK------SESAKNAAWKAFRDAVAQAGTGPAFSVIKNWIQT--NKIRNNQAADLIAVLPSTTRYP 6 O17428/22-746 89.7% 34.1% EAERDLYQSNNEIDPHD----ESQSVRRGTWAAFRDAVAQAGTAPALVTITLWIKQ--KKIRGVEAASVVGVLAKTARTP 7 VIT1_AEDAE/95- 98.0% 34.8% ELAQKYFVSQKERQVAQFSD-KKFSKRVDAWVTLRDAVAEAGTPSAFKLIFDFIKE--KKLRGYEAATVIASLAQSIRYP 8 Q9NAW9/41-851 97.4% 33.7% DVCQKLFVSQKEREEGSNHS-ESFAKKVDAWNTFRDALAQAGTPPAFKVIKELIEE--KKLRGNEAASVIATLPKTIRYP 9 VIT_ANTGR/23-7 88.0% 30.1% FVAEQMYSQMKNGQQR------------YTWSIFRDSVAEAGTGPALLNIKKWIET--KKIQKTEAAQVIGTLAQSTRFP 10 Q9U5F1/33-832 97.1% 32.9% YIGEQLYYPQSQVSNDN----REDSVKHQAWVAYRDAVVDAGTGPALVALSSWIQN--KKVYGMEAAKLLSALPDTVKTP 11 Q9U8M0/20-767 92.9% 31.7% KATS-LIHSESKHDLG--------------WIAYRDMVSESGTHPALEELSIWIIS--KKLSSEEGAELLATLPRAVIMP 12 BAB32673/21-77 92.9% 32.5% EATKRLYYRVERADNGD-------ESKLDAWKAYRDSVAQAGTPAALKMVHTWIRK--EYIKDEEAAKVVAVIPHAADTP 13 O76823/23-734 87.7% 25.1% EAARKL-YKLENDHP--------NYMNWDTWRVYRDAVSQAGTWSALNSIQQFISS--EMVEPKEASHLITVLPAAVSDK 14 Q9GR96/33-742 87.5% 22.3% DIAQQLQVKLDSQMVRK------DSPQWEAWKSFRDAVSQTGTHAAVHSIIIFLSR--RYISQSEAQDLFNVLPAAVQHH 15 VIT_BOMMO/34-7 87.8% 23.6% QTSRSIETAKTSNNI----------IKSDMWMIFRDGVTQAGTLPAFKQIQSWIEN--KKIQEEEAAQVVVALPRTLRYP 16 Q9GUX5/30-740 87.7% 23.2% QTSRTIGGDKSSNNN----------IKADMWMVYRDAVAQAGTMPAFQQIKAWINS--KKIQGEEAAQVVASLPSTLRYP 17 Q25269/30-712 84.3% 20.2% QFSRGIEVGKASNKI----------AKVDMWFIFRDAVIQAGTQPAFQLIETWIKT--KKIQGFLAAEVISSLAKTLRHL 18 VIT_ACITR/17-5 70.1% 9.4% GIWRQYEKT------------------QLYRRWILDALPAAATPTAFRFITQRIMK--RDLTDAEAIQTLVTAMHLV-QT 19 VTA2_XENLA/24- 70.1% 10.6% ALWKQFAQR------------------TQYRRCLLDALPMAGTVDCLKFIKQLIHN--EELTTQEAAVLITFAMRSA-RP 20 I50441/24-594 70.1% 9.6% SIWRQVSDK------------------PRYRRWLLSAVSASGTTETLKFLKNRIRN--DDLNYIQTLLTVSLTLHLL-QA 21 JC4956/24-592 70.1% 9.2% AIWAEFKAK------------------PAYRHWILDAVPSIGSSVAVRFIKEKFLA--GDITIFEAAQALVAAVHMV-AA 22 Q9W6I2/24-592 70.1% 9.9% AIWAQFKDK------------------PVYRRWLLDALPAVGTPVIVKFIKEKFLA--GDLTIPEFIQALVVALQMV-TA 23 AAK15158/24-59 70.1% 10.0% QIWSQFKGK------------------PVYRQWILDTLPAIGTSTTLRFIREKLMA--RDISILEAAQALVASIHMV-TA 24 VIT1_FUNHE/22- 70.1% 10.8% MYWNQYKKM------------------SPHRHWFLDTIPATGTFAGLRFIKEKFMA--EEITIAEAAQAFITAVHMV-TA 25 VIT2_FUNHE/24- 70.2% 11.0% ALWSQFKTK------------------IDHRHWLLSSIPAIGTHVALKFIKEKIVA--GEVTAAEAAQAIMSSTHLV-KA 26 AAK15157/25-59 70.1% 10.9% ALWSQYKVK------------------PAYRHWFLNAVPAIGTHASLKFIKEKFLL--DDISVVEAAQALIGSIHMV-TA 27 Q9YGK0/24-592 70.1% 11.1% SLWAQFKSR------------------PDHRYWLLNAVPHIRTHAALKFLIEKLLA--NELSETEAAMALLECLHSV-TA 28 VIT1_CHICK/24- 70.1% 10.9% SVWKQFSSR------------------PAYRRYLLDLLPAAASHRSLRFLRHKMER--QELTNWEIAQTVLVALHSS-SP 29 VIT_ICHUN/18-5 70.3% 10.9% SIWHKLHQQ------------------KDYRRWILDAVPAMATSEALLFLKRTLAS--EQLTSAEATQIVYSTLSNQ-QA 30 Q9DFT9/22-590 70.1% 8.5% HLWKQVSGN------------------DEHRRWFLDLVVEVTDERILKFLEARYKA--GDITANEAGQALVVAFNHL-SA 31 VIT6_OSCBR/26- 74.2% 11.2% SIRSLVSQK-----S------------EVVQSLYWDALAIAGTKVTVSHLLEKINN--KEISPMKASQLMKILAEVR-IP 32 VIT6_CAEEL/34- 74.1% 9.5% QIYRHVAEHKDEKIA------------EQLRSIYFNTLRLAGTRVTIQQFVDKVQSR-KNIAPLKASVAIKTLVDMR-YP 33 VIT1_CAEEL/24- 73.2% 10.5% EIHETLYVK----AD------------KKIQSLMEHALAIAGTKNTIQHILVHIEN--EDIVPLEAAQLLKSIQETP-FP 34 Q9N4J4/125-718 72.8% 9.9% KVHTTIYTK----AE------------KKVQLVIETTLAVAGTKNTIQHLIHHFEK--KSITPLRAAELLKSVQETL-YP 35 Q9U572/15-674 79.2% 12.1% TLYTHFDGK-----G----------TMQK--YIFVQLVIHAGTEPAVNFAVDNLSDILFYVT-------FYESIGVSLRT 36 Q9UAR3/16-714 82.6% 9.4% ALCSQIEHE-----E----------LHAKKLEIFYELLVTAGTEPAIRYLLDKIKDPEFRKTNVASVKTILENFHTSVKN 37 APLP_MANSE/39- 65.9% 9.3% RIYSQVKA------------------HQLEKRVYLDALLRAGTGESIEASIQILKS--KDLS-QLEQHLVFLSLGNARHV 38 Q9U943/40-578 66.5% 8.4% KVYNDVKAGAGFSN------------KHSARNLLLDALFRTSTGDAVEVIARLLKT--K----EITANHWYLSLAFIQHA 39 Q9NDS1/42-586 67.3% 8.8% EIAQKVRQGHYCSD------------SAKLESIFLDAVAFLHESGAVKVMVQEILN--GRAT-GGRLALYTAALYLTPRP 40 Q9GSG2/42-585 67.2% 8.8% QTLNKIRSGQYCQD------------YKKLEELFLDFVSFVDEPGAVKVMVKELLN--SRFT-RGRYSLYTAAFYLIPRP 41 Q94907/43-573 65.0% 9.3% ELAAFPHPN-----------------KVLARKVYLDGLFRTSTAESARVILKQLSK-----FDEKEKLLAILSLNIVKSV 42 Q9VLA0/86-645 65.9% 8.7% VLLQRSAST-----------------CEQGRNHLLESLPFIGSTASYKVMQTLETF--HSILEYAKNRLDAEYTLGATAV 43 178812/46-598 67.8% 10.1% SLLPQLIEVS--------------------SPITLQALVQCGQPQCSTHILQWLKR---VHANPLLIDVVTYLVALIPEP 44 Q9NDN7/26-625 73.2% 11.8% ELHKKLSGD--------------------SLTVFHHILPLVGTKSSTLFIKQLIVN--KVLSAGVASELLQHFPEHVIEP 45 Q9VF21/28-475 54.8% 7.0% NPID-----------------------------IETSMAAEPSNLELQRLDPNDPT--GGRSPQQQETLIAQAGTLLDSL 46 Q9U785/36-565 65.5% 7.8% TVDESVKTAICP------------AHAKRIRELFLDASAFAASDGSIRTLVKAHEN--QELS-VTRSTALFTVAAIKAAP 47 Q9VIH3/38-567 64.9% 7.7% DLLTEHAEVLP-----------------QLVDLLGAVQTFDAHNATFGFLYKESET---TSEQLDLLEKYLQSLAVATHP 48 MTP_MESAU/28-5 66.4% 8.9% QILKAEKKE--------------------VLPQLVDAVTSAQTPDSLEAILDFLDFK--SDSSIVLQERFLYACGFASHP consensus/100% .................................h.t......p..................................... consensus/90% th.tth..........................hhhp.l..hss..sh..h...h.t....h.......hh....t....s consensus/80% thhpph..t....................hh.hhhssls.suo.sshthlhphh.t..tplp..tttphhh.h.thh..s consensus/70% plhpphhtp...................thhthhhDulstsGTtsulphlhphlps..tplp..pssphlhhh.phh.hs cov pid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consensus/100% ......................h......................................................... consensus/90% s.t.ht.h..........t...lt..shhsh.phhp..t...t............................h...h...h consensus/80% s.phhp.h.thhpp....pt.hlptsshlshsshhp..p...t..........................t.hh..h.t.h consensus/70% stphhphhhphhps.ts.pp.hLppsshluhushhpthp..hpp.t.......................pphh..ltp.h cov pid 801 . . . . : . . . 880 1 Q9U5D8/21-818 100.0% 100.0% RKAV--QKGDSIQIQVYIRALANMGHPTVWAGFEPYLE-----GKYPVTDFQRLVMIAYLG--DMIKVHPNTARSILYKI 2 Q9U5D7/21-774 94.4% 55.6% ENAI--NQGDSIKVQVYIRALGNTAHPKILSIFEPYLE-----GARKVTDFQRFLMVAYLE--EFIKVHPNTARAVLFRL 3 Q9U5D6/22-808 98.0% 52.1% QDAT--DKGDSLKTQVYIRVLGNMAHRQVLAVFEPYLE-----GKIPITSFQRLLIVASLD--EFTRVYPNTVRSVLYRI 4 O02024/20-789 95.7% 49.9% ERAV--SRGDSIKAQVYIRALGNTAHPKILAVFEPYLE-----GKSQISEFQRLSIIASLD--EMTRTHPNLARDVLYRI 5 Q17083/21-790 95.6% 42.7% KSAI--RAADSQKIQVYIRALGNVGHPKMLSVFEPYLE-----GQEDSSDFQRLSMVLSMG--NLARLYPKQARAVLYKI 6 O17428/22-746 89.7% 34.1% KTSI--EKNENAKAHTYIVSLGNIAHPKILAVFEPYLE-----GKMPASTFQRLLMVISLN--KLATLKPKLARGVFYRI 7 VIT1_AEDAE/95- 98.0% 34.8% REAV--NEGDSVKIQVYIRSLGNLGHPQILSVFEPYLE-----GTIQITDFQRLAIMVALD--NLVIYYPSLARSVLYRA 8 Q9NAW9/41-851 97.4% 33.7% REAV--KAGDSVKVQVYIRCLGHLGHPEILNVFEPYLE-----GKIPVTHFQRLAFIVALD--RLVENYPRLARSVLFKV 9 VIT_ANTGR/23-7 88.0% 30.1% EKAI--SNADNNKIHVMIRALGNIGHKSILNVFQPYFE-----GEKQVSQFQRLMMVACMD--RLADCYPHIARSVFYKI 10 Q9U5F1/33-832 97.1% 32.9% KEAV--AQEDKPRIQVFIRAIGNLGYPKALARLSPYLENK-E-GKQPLTEFQRLLIVTSLD--KLVINYPKVARAMLFRI 11 Q9U8M0/20-767 92.9% 31.7% HAAM--ADGNRPKIQVIIRALGNTGNKRILNYLEPYLE-----RKKNATEFERLLMVTSLD--ILAEINPELARQVLYNV 12 BAB32673/21-77 92.9% 32.5% KNAV--KDKDSHKIQVYTRALGNTGHADIIRHFEPYLV-----GRESVSTHERVTMVFCLD--EFVKTQPSVAQYILLRL 13 O76823/23-734 87.7% 25.1% DDAV--KENNSIKIQLYTHALGVTGNTHILHYLRPYIIQ-----LKTITHHQRLFMVQSLE--RVVEHNPRKVIDLLLSL 14 Q9GR96/33-742 87.5% 22.3% ENAY--RRQNTTQMQVYVHTLGNTGDVRIIPYLEPYLLR-----QIHLSAFQRAHMFKALE--RVVDANPHLLTRFFLKF 15 VIT_BOMMO/34-7 87.8% 23.6% KATV--EYKDSTKAQVYIQAIGNLGHREILKVFAPYLEG-----KVEISTYLRTHIVKNLK--TLAKLRDRHVRAVLFSI 16 Q9GUX5/30-740 87.7% 23.2% KNAI--QRQDSSQAQVYIKSIGNLGHPEILKVFAPYLEG-----QIKTSTYLRTLMVSKLF--VLASQKNRQARAVLFSI 17 Q25269/30-712 84.3% 20.2% KQAV--EQEDYGKTLVIVKAIGTLGHREILKVFTPYLEG-----QIKVSTYLRVQMILALK--PLAEQKDRYVRSALFSI 18 VIT_ACITR/17-5 70.1% 9.4% NDAI--SRAHEEETVLALKALGNAGQPSSIKRIQKCLPGF-SSGASQLPVKIQVDAVMALR--NIAKKEPGKVQELTMQL 19 VTA2_XENLA/24- 70.1% 10.6% AEAA--NKGHYEDIALALKALGNAGQPESIKRIQKFLPGF-SSSADQLPVRIQTDAVMALR--NIAKEDPRKVQEILLQI 20 I50441/24-594 70.1% 9.6% DEAI--SRGREDKMKLALKCIGNMGEPASLKRILKFLPIS-SSSAADIPVHIQIDAITALK--KIAWKDPKTVQGYLIQI 21 JC4956/24-592 70.1% 9.2% VQAV--ANSKFEELSMVLKALGNAGHPASIKPITKLLPVF-GTAAAALPLRVQADAVLALR--NIAKREPRMVQEVAVQL 22 Q9W6I2/24-592 70.1% 9.9% AEAI--SKNDIPEITLALKVLGNAGHPASLKTIMKLLPGL-RTAATSMPLKVQVDAILALR--NIAKKEHKLVQPVALQL 23 AAK15158/24-59 70.1% 10.0% ARAV--AEENIEDIILLLKVLGNAGHPHSLKTITKILPLF-GSAAAALPTRVHVDAILAMR--NIAKKEPRLIQDMVVQL 24 VIT1_FUNHE/22- 70.1% 10.8% SDAI--AKNEEENIILYIKVLGNAGHPSSFKSLTKIMPIH-GTAAVSLPMTIHVEAIMALR--NIAKKESRMVQELALQL 25 VIT2_FUNHE/24- 70.2% 11.0% AKAL--EKRDNDELSLALKVLGNAGHPSSLKPIMKLLPGF-GSSASELELRVHIDATLALR--KIGKREPKMIQDVALQL 26 AAK15157/25-59 70.1% 10.9% IQSV--ANADIDGAIIAVKVLGNAGHPASLKPIMKLLPGF-STAAAALPLNVHIEAILALR--NIAKKEPKLIQDLAVQV 27 Q9YGK0/24-592 70.1% 11.1% AEAV--ETGDIDQLTVTLKCLDNAGHPASIKTIMKFLPGF-GSAAARVPLKVQVDAVLALR--RIAKREPKMVQEIAAQL 28 VIT1_CHICK/24- 70.1% 10.9% GEAL--GKSNIEEVLLALKALGNVGHPASIKHIKKFLPGY-AAGASELPLKVHETAVMALK--SIGMRDPQMVQAITLEI 29 VIT_ICHUN/18-5 70.3% 10.9% SQSS--DRADEEEIVLALKALGNAGQPNSIKKIQRFLPGQ-GKSLDEYSTRVQAEAIMALR--NIAKRDPRKVQEIVLPI 30 Q9DFT9/22-590 70.1% 8.5% ASSL--SKNSEDEMVLALKSLGNAAHLSSIKTLLKFLPGY-SNGAEKLSTRVQGAAVQAFR--LLASRAPHSVQDIVLNL 31 VIT6_OSCBR/26- 74.2% 11.2% EKMN--QAESRYEKVLFVKAIANAGIDTSVVELEKIIR------NQEVEKTVRMQAIDALR--RLRLSMPKKIQNVLMPV 32 VIT6_CAEEL/34- 74.1% 9.5% QQFE--SASTRYEKVLALKTLANAGLDLSVYPLEKIIL------NEQHETTIRTQAIESFR--RLRTQMPTKIQRVLMPV 33 VIT1_CAEEL/24- 73.2% 10.5% QQYK--DAETTYEKILALKSIGNAGLDISVNQLNEIIV------DKRQLLPVRKEAIDALR--LLKDTMPRKIQKVLLPI 34 Q9N4J4/125-718 72.8% 9.9% QHFR--NADSTYEKVLALKTLGNAGIDLSVYELVQLIQ------DPRQPLSIRTEAVDALR--LLKDVMPRKIQKVLLPV 35 Q9U572/15-674 79.2% 12.1% GN----QGKDVWQRLIYLQALSNLGTPQTINVLKPIILG----VTETNI-FMRTNAIWSLSAYNMHKTALSQIYEILMPI 36 Q9UAR3/16-714 82.6% 9.4% QD----DESSLWIRLVYIQALANLGIPQTIDVLKHFALGD---KPSTNIHVLRTNAILGLSGVYLPETAQSSVFGILMPV 37 APLP_MANSE/39- 65.9% 9.3% PKNK--PDEDV--VVAILKGIRNIRHLEDSLIDKLVHCAV----DNNVKARVRAVALEAFH---ADP-CSAKIHKTAMDI 38 Q9U943/40-578 66.5% 8.4% TTSK--AGENR--AIAALKALGNIRHLNNALGEKVKQLGL----DKSLPPRVRVAALEVIQ---SDP-CRKNIKQAALQI 39 Q9NDS1/42-586 67.3% 8.8% SPSI--GVEEKEEALAIFKALGNMGVVTPAVTRAAAQCIE----KEGLETSIRVAAAQAFR---QAN-CDRPAVQKLVDI 40 Q9GSG2/42-585 67.2% 8.8% SASE--DEQTVQAALTTLKALGNMGVMTPAVATSVLRCMG----TEGADNRIRVAAAQAFR---KAK-CHRASTGRLVGY 41 Q94907/43-573 65.0% 9.3% KHCKPNTKREEERIVYILKGLGNAKSLSGNTVAALSECA-----STGRSNRIRVAALHAFS---KVK-CEETLQSKSLEL 42 Q9VLA0/86-645 65.9% 8.7% -----GERRTRERMVILLKGLGNIGVVSSAFAEQLQWIIR----EDEAPVDIRLHGILAFR-----RVDCARHRSYFLDN 43 178812/46-598 67.8% 10.1% QDD---CTGDEDYTYLILRVIGNMGQTMEQLTPELKSSILKCVQSTKPSLMIQKAAIQALR----KMEPKDKDQEVLLQT 44 Q9NDN7/26-625 73.2% 11.8% NKLR--SSHDYKVQMTYLMGLCNMRLHSIIKHLLPAVYG-----EWYPDHHFRLLSLWAVSTAVVEERDPNTVIETLWPI 45 Q9VF21/28-475 54.8% 7.0% DIGT--SYRQETIRNIFHEIIPRIGTKASVFLTHHLVLN------KLTKPQIAVQLLIPMP--FHIFELSAELVQKCEDF 46 Q9U785/36-565 65.5% 7.8% AVAKDPSERMTIVRALENLNVNTEDVDNMINAMDEIIK------STDAEPSLRAAAVNALP-------SDASHMDRYKSL 47 Q9VIH3/38-567 64.9% 7.7% LQG-----LTSKEPTLYIRALQNLQDPATIEALLEHAQTG----EAPNLSVAALQALKAFP--LGSFNSSHRLQFESIFY 48 MTP_MESAU/28-5 66.4% 8.9% GGLE--KPEKKEDTTMYLLALKNALLPEGIPLLLKYAEAG-----EGPVSHLATTVLQRYD----VSFITDEVKKTLNRI consensus/100% ...............h....l...............................t...h..h..........t......... consensus/90% .t....t.tp...h.hhhpslssht..t.h..h..hh...............ph.hh.sht.........t.h.thhh.h consensus/80% tps...tttp..ph.lhl+sluNhu..t.l.hh..hh.......t.th..h.ph.hl.uhp...hh...sp.hpthhhtl consensus/70% tpuh..pptsp.ph.lhl+sLGNhGpsp.lthhp.hl.......ttths.hh+hthlhulc...hsp.tsphhpphhhpl cov pid 881 . 9 . . . ] 936 1 Q9U5D8/21-818 100.0% 100.0% YQNEG--DVPAIRVAAVMQLMKTNPPASLLQRMAEHTNYDH--SEHVNAAVKSAIE 2 Q9U5D7/21-774 94.4% 55.6% YHNQG--DIPEVRAAAAMQLMKTNPPPQILQHMAEQTNYDH--SKHVNAVVKSAIE 3 Q9U5D6/22-808 98.0% 52.1% YNNQA--EVPEIRVAAVMQLMKTNPPAQLLQHMAEQTNYDY--SKHVNAAVKSAIE 4 O02024/20-789 95.7% 49.9% YQNTA--EKSEIRAAAVRQLMRTNPPAQMLQRMADFTNYDH--SHQVNAAVKSAIE 5 Q17083/21-790 95.6% 42.7% YQNTG--EAYQVRTAAVFQLMRTNPPPSMLQRMAEFTNQDT--SKQVNAAVKSIIE 6 O17428/22-746 89.7% 34.1% YKNTG--EAHQLRCAAVTALMSTNPPASMLQRMAEFTNEDH--SKHVNAAVKSAIE 7 VIT1_AEDAE/95- 98.0% 34.8% YQNTA--DVHEVRCAAVHLLMRTDPPADMLQRMAEFTHHDP--RLYVRAAVKSAIE 8 Q9NAW9/41-851 97.4% 33.7% YQNTG--DAHEVRCAAVYLLIRTKPPVYMLQRMAEQTHYDP--STYVRAAVKTALE 9 VIT_ANTGR/23-7 88.0% 30.1% YQNTA--ELPEIRVVAVHQLIRANPPVEMLQRMAQYTNTDS--QEEVNAAVKSVIE 10 Q9U5F1/33-832 97.1% 32.9% YEDMT--ENHALRCAAVHLLMKTNPSAVLLQRMAQFTNVDQ--SQHVISAVQSAIK 11 Q9U8M0/20-767 92.9% 31.7% YINIG--ENHELRCASVILLMRTQPPAAMLQRMAEFSNIDP--VKQVVSAVQSAIR 12 BAB32673/21-77 92.9% 32.5% FENVG--ETQEIRVAALYLLMKTDVSAELFQRLAEYTKFDK--NHQVVSAVQSAIR 13 O76823/23-734 87.7% 25.1% YLDQN--EHADIRVEALFLLMKADPSIHVLKMVAELTHTES--NNQVLSASQSAIK 14 Q9GR96/33-742 87.5% 22.3% LLDQT--DHPDVRVQAVFLLMRSDPSVAVLRTMAELTHSEP--VNQVVSAIQAAIR 15 VIT_BOMMO/34-7 87.8% 23.6% LRNTA--EPYPVRVAAIQSIFISHPTGEMMQAMAEMTHNDP--SVEVRAVLKSAIL 16 Q9GUX5/30-740 87.7% 23.2% LRNTA--EPYEVRVAAIHNIFIAHPTGAMMQAMAEMTHDDP--SVHVRAALKSGIN 17 Q25269/30-712 84.3% 20.2% LMNTA--EPYEVRVAAAMILFLNEPTTDMLRVMAQLTNDDP--SIHVRAVLKSSIE 18 VIT_ACITR/17-5 70.1% 9.4% FMDHQ--LHSEVRMVASMVLLETRPSMALVATLAEALLKET--SLQVASFTYSHMK 19 VTA2_XENLA/24- 70.1% 10.6% FMDRD--VRTEVRMMACLALFETRPGLATVTAIANVAARESKTNLQLASFTFSQMK 20 I50441/24-594 70.1% 9.6% LADQS--LPPEVRMMACAVIFETRPALALITTIANVAMKESKTNMQVASFVYSHMK 21 JC4956/24-592 70.1% 9.2% FMDKA--LHPELRMLACIVLFETKPPMGLVITLASILKTEK--NMQVASFTYSHMM 22 Q9W6I2/24-592 70.1% 9.9% VLDRA--LHPEVRMVACIVLFEAKPSVALVSNLAGALKTET--NMHVASFAYSHIK 23 AAK15158/24-59 70.1% 10.0% FMDKG--LQPELRMLACIVLFETKPRIGLVTALANVLKTEE--NLQVASFTYSHMK 24 VIT1_FUNHE/22- 70.1% 10.8% YMDKA--LHPELRMLSCIVLFETSPSMGLVTTVANSVKTEE--NLQVASFTYSHMK 25 VIT2_FUNHE/24- 70.2% 11.0% FMDRT--LDPELRMVAVVVLFDTKLPMGLITTLAQSLLKEP--NLQVLSFVYSYMK 26 AAK15157/25-59 70.1% 10.9% FMDKA--LKAEIRMAAALVLFETRLPMGLVTAIADATLKES--NLQVASFVYSYMK 27 Q9YGK0/24-592 70.1% 11.1% LMEKH--LHAELRMVAAMVLFETKLPVGLAASISTALIKEK--NLQVVSFVYSYMK 28 VIT1_CHICK/24- 70.1% 10.9% FLNHK--IHPRIRMLAAVVLLETKPGLPILMILVDAVLKEP--SMQVASFIYSHLR 29 VIT_ICHUN/18-5 70.3% 10.9% FLNVA--IKSELRIRSCIVFFESKPSVALVSMVAVRLRREP--NLQVASFVYSQMR 30 Q9DFT9/22-590 70.1% 8.5% FVQKH--LPAEIRMLACIVLLETMPSTALISVVSEVLLEEA--DLQVASFSYSLLK 31 VIT6_OSCBR/26- 74.2% 11.2% YRNHK--ETPGIRISALHMIMQTQPTSGVLDMIVRGLEKER--SQQVRVYTWSTLK 32 VIT6_CAEEL/34- 74.1% 9.5% YLNRQ--QPQHIRMSALHQIIYTQPEWSVLSQIGNQLRQER--DQQVRAFTLSLLR 33 VIT1_CAEEL/24- 73.2% 10.5% YKNRQ--YEPEIRMLALWRMMHTRPEESLLVQVVSQMEKET--NQQVAALTHQMIR 34 Q9N4J4/125-718 72.8% 9.9% YKNRQ--NKPELRMAALWRMMHTIPEEPVLAHIVSQMENES--NQHVAAFTYNVLR 35 Q9U572/15-674 79.2% 12.1% IENKG--EQFEIRNIAFLTLATWGPGHAWWQQLAVSTWHDP--SPQFANFVTTTIY 36 Q9UAR3/16-714 82.6% 9.4% FENTG--EHNEVRAVAFLAMMTFKPSLAWWERIAISTWRDP--SSQVANYVSTTIT 37 APLP_MANSE/39- 65.9% 9.3% MKNRQ--LDSEIRIKAYLAVIEC-PCSHSASEIKNLLDSEP--VHQVGNFITSSLR 38 Q9U943/40-578 66.5% 8.4% LRDQV--EDSELRIKAYLAVVEC-PCDNVVKTISNLLENEP--IIQVGSFVVSHLK 39 Q9NDS1/42-586 67.3% 8.8% ATRPT--FETEVRIASYLAAIRC-AEKEHLEQIIEKISEEE--NTQVRGFVLGHLI 40 Q9GSG2/42-585 67.2% 8.8% ALDSR--KTTEVRIASYIAAVRC-AEKWDFEKIVEKISVGQ--NTQVRGFILSHLR 41 Q94907/43-573 65.0% 9.3% LKNRN--EDSELRIEAYLSAISC-PNAEVANQISEIVNSET--VNQVGGFISSNLK 42 Q9VLA0/86-645 65.9% 8.7% YGNYT--LNSELRIYSYLQAMRC-PDYISVGVIKSILEHEE--INQVGSFVWSHLT 43 178812/46-598 67.8% 10.1% FLDDA--SPGDKRLAAYLMLMRS-PSQADINKIVQILPWEQ--NEQVKNFVASHIA 44 Q9NDN7/26-625 73.2% 11.8% FTNVD--ELTEMRTIAFYFIMMTYPNDSRLTNMFNYLLMEP--NDEVYSFVYTFMH 45 Q9VF21/28-475 54.8% 7.0% LNIGP--DRPDVRQAAILSFATLIHNVYVAKGIDKEKFEEY-----VQKYFNA--- 46 Q9U785/36-565 65.5% 7.8% VMDES--MPNEARIAAFHKMMQN----GGMTHIKDLFAVKG---DCMKNYVLTYVD 47 Q9VIH3/38-567 64.9% 7.7% QRKRR--FDSSARTLALDIILSLRPTQEQLGNFLDYLASNDR-QFEIKTYVLQKLR 48 MTP_MESAU/28-5 66.4% 8.9% YHQNRKIHEKTVRTTAAAVILKSNPSYMDVKNILLSIGELP---KEMNKYMLTFVR consensus/100% ...........hR..u...hh........h..h.............h..h..t... consensus/90% h.p.t.....plRh.uhh.hh.s......ht.h.t.h..-.....pl.shh.s.h. consensus/80% h.spt.....clRhhAhh.hhps.Ps.thhpthsp.h..-...s.pVtuhhhohhc consensus/70% hhsps...tsElRhhAhhhlhcspPshthlpphuphhtp-...s.pVtuhlhStlc