cov pid 1 [ . . . . : . . . 80 1 HSHTPIII 100.0% 100.0% AVSESSAEIDELSTAQSTNVSTVATEVETLS----ATVQEIASTADEVVDTSATAERLADDGSAAASDAADMMADVATAA 2 HTR1_HALSA 100.0% 33.3% DTVEAVSKIESQPNDQRTELDSAADDVQQVS----ASAEEIAATIDDLASRSEDVATASDAARDSSKSALDEMSSIETEV 3 D9090450 100.0% 21.8% EDSQEITSLSDNALEQARALEFATASVAEMA----QSIESVAISAQTAAAIAKQGNEAAQQGQNTMDETVESIYKVRGRV 4 S61831_ 94.7% 22.5% AADKRATAAEAIVSDLPGSAAEFSGNAGAEA----KAIDQHLASLGTVTERIRTGAIRIGETEAQASRTRIAVERSGEIA 5 HSU75436 100.0% 47.3% DVAERTDTMRARTDDQVDRMADVSREISSVS----ASVEEVASTADDVRRTSEDAEALAQQGEAAADDALATMTDIDEAT 6 HSU75437 100.0% 40.1% QVSESVQDISADAEEQRDRLGTVGDEVHALS----ATVEDIAARPTTSPSTVNQAATESERGQELGEDAVAELERIEATA 7 TLPA_BACSU 100.0% 26.1% HITMAIEQFSNGSESQSEKIETTTEQINEMN----DGLAELARAAAVITETSADSTEVSSKGETLVQKTAGQMNTIDHSV 8 TLPC_BACSU 100.0% 27.2% KITEAVQQIANGAQDQITRIENSESSLKQAS----ADIRDISANTAAIADKGQLAQSKADIGQKEIANVQAQMDAIHQSI 9 CPS_CLOTM 94.7% 22.9% NINEVAAQVAAGAKQVSDSSMQLSQGATEQA----SSIEELTASLEQVANQTQLSAKNANQANELAEVAKNNAEQGNKQM 10 SYCSLLLH8 100.0% 25.2% TNEVAVRQLAQQANRQALDVAEALERLQAMN----KSIQAVAENAAQAESAVQRATQTVDQGEDAMNRTVDGIVAIRETV 11 FRZC_MYXXA 100.0% 26.0% QVLAASTQHETSSTEQAAAIHETTATMEELK----HASAQIAENAGSVARVAEETLGAARAGRGAIGEFIQAMQQIRSDG 12 HTR2_HALVA 100.0% 34.8% QVSKSINEIFEGTTEQNEGLESAAAEMQNLS----ATAQQVASSAQQVADTSQSAAKVGEDGREAAQEAIAEMSAIEAET 13 MCPA_CAUCR 94.7% 24.0% VIAASTDGLSTGADEIAHASDDLSRRTEQQA----ASLEETAAALDELTATVRRTAAGARQASDVVSTTRGEATHSGQVV 14 HSHTPIVAV1 100.0% 36.5% TVSESVQEIAAGTDDQREQLESVAEEMDSYS----ATVEEVAATAQSVADTAADTTDVATAGKQTAEDAIDAIDAVQETM 15 PSEPCTA 100.0% 29.4% LVVNASNSSMANSDEQSNRTNSVAAAINELG----AAAQEIARNAADASHHASDANHQAEDGKQVVEQTIRAMNELSEKI 16 MCPC_BACSU 100.0% 25.6% QIAKAIEEVAAGASEQASEVETINEKSESLS----TKIRQIAEEAGGIKERSKSSEDASYKGLHALGQLLMKSNEANMET 17 DCRA_DESVH 99.6% 27.9% ALVTRMGELERDATEAASETTQVATAMEEMN----VTVTEVARNASSTAEMADCQWRAQSGGTEMAN-TVRETRQVAQRT 18 ATU600115_ 94.7% 23.3% DIRNNVEMIQSSGSEMAQSAGDLAKRTEQQA----ASLEETAAAVDQITVTVRSSAERAKDVALIVRQAKVSADESAVVV 19 TDU84257 94.7% 21.4% TQAASVTETAATIEQIVRTIKQLNNSIENQA----ASVARSTASIEEMVANIASITQTLEKTYDVVKNLASATEDGKETI 20 O30965-699 94.7% 26.3% AVIRAVGTIRSGLAEISTASNDLARRTEQQA----ASLEETVAALGEVTRGVNGTAEGASRAQGVVATARTNAEKGGEIV 21 G2688521-727 94.7% 18.3% RFEKSIVDILKGFESIADPINDHNKYISEIS----SNFEESVSFFYSIDKNLEIFNKVATINSTDIENIKSKVFDLNIVF 22 Y4SI_RHISN-734 94.7% 23.3% TVAAQAASMSSIVSEISCATDVLAKRTEHQA----IVLDGAVNTMDAISNDVSVTANAANNADALVRDAHSAAAASDEIV 23 G2688522-692 94.7% 22.1% KQVEFISNTTNIIESLSKNISSLDNSIETQA----ASVEQSSSAIEEMIGGIQSITEITQKAAKSTEELKRFSDDGRKKQ 24 VCU39068 100.0% 26.7% ETQELVEVCNNSVMDQYRELDMLASSMNEMV----ATSNQIAQITSEASEITSKINGQVNEGVGAVSSVTESVGNLVEKL 25 JC4735 94.7% 22.5% SIVQTTDVVETEAGQLGSASMELGRRTETQA----ASLEETAAAMNEMAASVAQSVEGARSAAQAVNRTRATTATGREVV 26 O34576-533 100.0% 27.5% HISRAMQMAADSNVKQSSMTEKSAESITELL----DSISSVASNTGNIADLSSSMRDKAEIGSKSVNKMLDQMKFIDKSV 27 G2688620-633 91.6% 22.8% NFSSVAKGVIENLDYLYENAIQIANASQNLS---SGAVEQAS-TLEQMTANIEQISQGVSENTENAATTEKIAVNTNERT 28 JC4736 94.7% 25.2% DISVSATAVDTSAREIAGAGDDLARRSERNA----AMLEQTASALEQMSATVRSAANSAQTARSAVTEISTRAGAGHQVV 29 HSHTPVI 100.0% 35.5% DVSDAVGRIRDRAADQRDQLEAVASETDEMS----ATIEEVAASADQVAETSQRAAALGDDGQAAAQDAVAQLEEIEDET 30 O29217-809 100.0% 24.1% QISSASQQIATGSENLSRLANASTLDLKAAE----EIFKDLTARAENSAKFADEASQNAEMAKKEGVKALEIIKSIVQEV 31 O24929-564 94.7% 21.4% KLVQITQETQKSMKDSSTTLNSVKNKATDIA----SMMNASIEQSQGLRKRLIETQGLVKESKDAIGDLFSQITESAHTE 32 O06022-450 94.7% 30.9% KVGSFAEETEPFAGKEIERMEGFADKVSNQS----ATIEEIASSAEEVSQASQRAQDRATEGEQTAETAIDRMGAVQESA 33 AIR_ECOLI 94.7% 25.2% DVSSQVSSVRNGSETLAKGTDELNEHTQQTV----DNVQQTVATMNQMAASVKQNSATASAADKLSITASNAAVQGGEAM 34 TCPI_VIBCH-615 100.0% 26.3% DITYSIEGNTNNSQQELGLIEQVATATTQLS----CTSFDVMQQAQSAELNAETAQKLIAESHDIIDSSSKQTEMVTLSI 35 MCPD_ENTAE 93.9% 26.3% AVRDGAESILIGLQEIAEGNNDLSSRTEQQD----RSLEETAASMEQLTATVKQNADNARQASQLAR-DASSTAAKRTLA 36 D9090275 100.0% 22.9% DSESFARNNSSDALRMAEELAVTLNSVQLMT----ESIERVAENAREAEEVAHTSSLTALKGGEAVERTVGGILQIRETV 37 PILJ_PSEAE 100.0% 25.2% ETQSTAMHLAEASEHQAQEIAGASAAINEMA----VSIDQVSANASESSAVAERSVAIANKGNEVVHNTITGMDNIREQI 38 O32239-565 100.0% 25.4% HITETMNEMAEGSEQQAQDAVTIAESMNEFT----ESIDKAYNHGITISDTSQNVLELAVSGNENMATSLQQMKTIHHIV 39 Y4FA_RHISN-830 94.7% 24.4% DIRTTSSVIQGSGRQMAEGAKALSGRTEQQA----ASLEETAASVDEIVATIRRAGDQAANADNTVSKAKQDADRSTVVV 40 HSHTPIVAV 100.0% 37.3% QVSESVQEIAGAADEQRNMLDTVSGEMTDLS----AAIEEVAASADSVAEHSHQTAEIARDGEQTAEDAIERSLSVQEAI 41 TPU569991 98.5% 14.8% VQGEGFSQTRVVNEELGSSLRELDEQMEAQG----ERAREALEAVERLGSTVHNLRGKFSAVHADFEAITTASKTGKECV 42 RLSPRLVCP 94.7% 25.2% AVSNATESIDDGAQEISLSAQDLSRRTEHQA----ASLEQTAAALDQITQNVASSSKRTAEARHVAIEANKSARHSGEVV 43 JQ1475 100.0% 29.0% GLLKDIESSNVLTVEQQAETDQIATAVNQMV----ASIQEVASNAQHAADAAGRADTETASGQRLVAHTSQSITALEGEI 44 DVU30319 98.9% 26.3% DLTAQVHTITQAVETQRHRMDDTAQAMDTMR----TMVSDVADN-WRAAEQADLSRGHGSRAPREWA-AVASIGQVRERI 45 S54262 94.7% 24.8% DVISAAESIRNEARDISSAAQSLAQRTESTA----ATLEETAAALDGLTVSVRSAADGAAEADRVVADARANAEESGHVV 46 HTR2_NATPH 100.0% 34.4% DVNRAVQNISDAAGDQTETVQQIALEMDDVS----ATTEEVAASADDIAKTARQAAETGEAGRETAETAITEMNEVESRT 47 HLYB_VIBCH 100.0% 29.0% SVSQRAHMTQSNCASQRDRTVQVATAIHELG----ATVSEIASNAAMARDVANEATLHSGEGKKVVGEVQNRIQTLVNEL 48 TMPMRFDNA1 96.2% 19.4% FTSQLDEALTRKLRRMQREIEEVKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERV 49 HSU62676 100.0% 36.6% DVSTAVDEISDGATEQTDRLHEVAGEVDDLS----ASAEEVAETVASLADTAGQAASAVDDGRQATEDAVETMDDVADDA 50 RLU81828 94.7% 23.3% EIKTASVAVEGGSSELASSADQLARRTEQQA----AALEQTAAALDEVTTTVRTSSQRAENAGKLVEETKRSAHVSATVV consensus/100% .......................................t........................................ consensus/90% t..t..t.htt..tp..tthtthstthpt.s....t.hpphhtthtth.t..tt.tt.sttstt.htph.tth.t.tt.h consensus/80% thtpthpthtttstp.tpthtphstphpp.s....tshpphstshtphsttsppstthsptupp.htpshtthtthtp.h consensus/70% plspsspphtssspc.spthpplupphpp.u....sslppsusshpphspssppssptuppupphsppshpphpphtpth cov pid 81 . 1 . . . . : . 160 1 HSHTPIII 100.0% 100.0% DSVTSDVEALQNRIEDIDEVVDVITGIAEQTNMLALNASIEAARAGE----VGEGFAVVAEEVKALAEDAQSNAGHIESL 2 HTR1_HALSA 100.0% 33.3% DDPVGQVEHLRDQVAEITDIVDVITDIGEQTNMLALNASIEAARAGGN--ADGDGFSVVADEVKDLAEETQDRANEIAAV 3 D9090450 100.0% 21.8% AEISKKSKRLAESSLEISKIVGIISGISEKTNLLAFNASIEAARAGE----NGQGFRIVADEVRRLAEMVTLSAQEIEQV 4 S61831_ 94.7% 22.5% GQAISAMADIEASAEKIGQIIGVIDEIAFQTNLLALNAGIEAARAGE----SGRGFAVVAQEVRALAQRSGEAAREIKQL 5 HSU75436 100.0% 47.3% DGVTAGVEQLGERAADVESVTGVIDDIAEQTNMLALNASIEAARAGE----AGEGFAVVADEVKALAEESREQSTRVEEL 6 HSU75437 100.0% 40.1% DSAVERVTALEEAVDAIGHVTGVITDIAEQTNMLALNANIEAARADK----SGDGFAVVADEVKDLADEVKESATEIETL 7 TLPA_BACSU 100.0% 26.1% KAAEQVVKGLEIKSKDITNILRVINGIADQTNLLALNAAIEAARAGE----YGRGFSVVAEEVRKLAVQSADSAKEIESL 8 TLPC_BACSU 100.0% 27.2% QKSGEIIHQLDGRSKQIEQILSVITQIADQTNLLALNAAIEAARAGE----QGKGFAVVADEVRKLAEESQQSAGQISKL 9 CPS_CLOTM 94.7% 22.9% AEMLNAMEEINNSSSNISRIIKVIDEIAFQTNILALNAAVEAARAGQ----HGKGFAVVAEEVRNLAARSANAAKETTEL 10 SYCSLLLH8 100.0% 25.2% AATAKQVKRLGESSQKISKVVNLIGSFADQTNLLALNAAIEAAHAGE----EGRGFAVVADEVRSLARQSAEATAEIAQL 11 FRZC_MYXXA 100.0% 26.0% VAVADSIAKLSKRVERIGTVVEVIDEIADRSDLLALNAALEGSRAGE----AGKGFSIVAAEMRRLAENVLDSTKEIKNL 12 HTR2_HALVA 100.0% 34.8% GETVEEINALDDELDEIGEIVGVITSIVEQTNMLALNASIEAAHADG----DGEGFAVVADEIKGLAEETKEAAADIEGR 13 MCPA_CAUCR 94.7% 24.0% HQAVSAMGEIEKSSGQISQIIGVIDEIAFQTNLLALNAGVEAARAGE----AGRGFAVVAQEVRALAQRSAEAAKEIKAL 14 HSHTPIVAV1 100.0% 36.5% QTTVANVDALEDLTTEIDDIAELISDIAEQTNMLALNANIEAARAGSGGGSNGDGFAVVADEVKELATESQRSAKDIAEL 15 PSEPCTA 100.0% 29.4% SASCANIEALNSRTVNIGQILEVIKGISEQTNLLALNAAIEAARAGE----AGRGFAVVADEVRNLAHRAQESAQQIQKM 16 MCPC_BACSU 100.0% 25.6% KKEETMLLDLENQTKNIEEVVTAISNISDQTNLLALNRSIEAARAGE----SGRGFAVVADEVRKLAEQSALSTKHISET 17 DCRA_DESVH 99.6% 27.9% EDLAESLHELARRADNIGRVIEVINEIADQTNLLALNAAIEAARAGD----AGRGFALVADEVRKLAEKTMVATREVEQA 18 ATU600115_ 94.7% 23.3% TNATDAMSRIEDASRHIEQIIGVIDEIAFQTNLLALNAGIEAARAGE----SGKGFAVVAMEVRELAQRSAAAAGEIKGL 19 TDU84257 94.7% 21.4% ITSNSVTQKIAEESGSLMEASSVIQHIASQTNLLAMNAAIEAAHAGE----AGKGFAVVADEIRKLAEDSATQGKTITST 20 O30965-699 94.7% 26.3% ARAIDAMTEIQNSSSKIGNIISVIDEIAFQTNLLALNAGVEAARAGE----AGKGFAVVAQEVRELAQRSANAAREIKQL 21 G2688521-727 94.7% 18.3% ENVNKNFADLLSQTNSLQSVNKLLVSISAQTNMLAMNAAIEAAKAGD----AGKSFAVVAEEIRKLAINSGKYSKTIKDE 22 Y4SI_RHISN-734 94.7% 23.3% SSAIAGMLEIEESSAKIATIVSVIEEIAHQTNLLALNAGVEASRAGE----AGKGFAVVASEVRALAQRSSDAAKEIKDL 23 G2688522-692 94.7% 22.1% EEVITQIKEIFKNSTRLQEANSLISSIASQTNLLSMNAAIEASHAGE----AGKGFAIVAEEIKDLAEQVTSQSESVASS 24 VCU39068 100.0% 26.7% DKTKSVIQDLNRQTQNIDVILKAINDIADQTNLLALNAAIEAARAGE----NGRGFAVVADEVRSLAIKTQESTKNIGSI 25 JC4735 94.7% 22.5% RQTQRAMDDIAQSSDKISRITHVIDDIAFQTNLLALNAGVEAARAGE----TGRGFAVVASEVRALAQRSSEAAREIAAL 26 O34576-533 100.0% 27.5% DSAGNGLQTLVASTAEISDISSLITTISEQTNLLALNAAIEAARAGE----QGKGFAVVAEEVRKLADETNKSANHIQSV 27 G2688620-633 91.6% 22.8% KEGHKSVVKAIEAMTVITEKIGIIDEITRQTNLLALNASIEAARVGE----KGKGFEVVAAEVRKLADQSKESAREIIDI 28 JC4736 94.7% 25.2% SRAVSAMDEIKASSEAIGRILQVIDDIAFQTNLLALNAGVEAARAGD----AVRGFAVVASEVRALAQRSSEAAREIARL 29 HSHTPVI 100.0% 35.5% QAAATAVDDLEAKMSEIETIVAAITDIAEQTNMLALNANIEAARADQ----DGDGFAVVADEVKDLADESKASAAEIEAL 30 O29217-809 100.0% 24.1% ENASKVVETLEQAVRNIGKVTERIKSIADQTNLLALNAAIEAARAGE----HGRGFAVVADEVRKLAEESRKSTEEIDEI 31 O24929-564 94.7% 21.4% EELSSKVEQLSRNADDVKSILDIINDIADQTNLLALNAAIEAARAGE----HGRGFAVVADEVRNLAGRTQKSLAEINST 32 O06022-450 94.7% 30.9% ERVNDTIDGLTSQADEMSEIIDAINDIADQTNMLALNASIEAARAGE----KGEGFAVVADEVKSLAEESQERADEIEQM 33 AIR_ECOLI 94.7% 25.2% TTVIKTMDDIADSTQRIGTITSLINDIAFQTNILALNAAVEAARAGE----QGKGFAVVAGEVRHLASRSANAANDIRKL 34 TCPI_VIBCH-615 100.0% 26.3% HESQQIINQLREFSDNISSVTDVINNISDQTNLLALNAAIEAARAGE----QGRGFAVVADEVRSLAVKTQQSTIDIQGI 35 MCPD_ENTAE 93.9% 26.3% DDVVTTMHDIANSSQKIGAITSVIDGIAFQTNILALNAAVEAARAGE----QGRGFAVVAGEVRNLASRSAQAAKEIKLL 36 D9090275 100.0% 22.9% SETARKVKRLAEASQEISKIVAVISQIASRTNLLALNASIQAARAGE----AGRGFAIVADEVRQLADRSAKSLKEIEQI 37 PILJ_PSEAE 100.0% 25.2% QDTSKRIKRLGESSQEIGDIVSLINDIADQTNILALNAAIQASMAGD----AGRGFAVVADEVQRLAERSSAATKQIEAL 38 O32239-565 100.0% 25.4% EEAVHKVRSLEQHSQDINKLVQVINGIAEQTNLLSLNAAIEAARAGE----SGKGFAVVAEEVRKLADGVSDSVQDITRI 39 Y4FA_RHISN-830 94.7% 24.4% GNATAAMGRIEAASSHIGHIIEVIDDIAFQINLLALNAGIEAARAGE----AGKGFAVVAQEVRELAQRSAGAAREIAAL 40 HSHTPIVAV 100.0% 37.3% DATVQNVEALDDQMAEISEIVDLISDIAEQTNMLALNANIEAARADK----SGDGFAVVADEVKDLAEETQESAGDIERR 41 TPU569991 98.5% 14.8% GRMMEVIEEITSRSRGLAVTNALVVDISGRTNLLAMNAAIEAAHAGD----AGRGFAVVAGEIRSLAARTAAESGATGKM 42 RLSPRLVCP 94.7% 25.2% SSAVAAMQRIERSSSRISSIVGVIDEIAFQTNLLALNAGVEAARSGE----AGKGFAVVAQEVRELAQRSAHAAKEIKDL 43 JQ1475 100.0% 29.0% RQATQVIHELEGQSNEISKVLDVIRGIAEQTNLLALNAAIEAARAGE----QGRGFAVVADEVRSLAARTQQSTTDIQSM 44 DVU30319 98.9% 26.3% ERLNTAMARLGEEADSIGKVMSVISDIADQTNLLALNAAIEAARAGD----AGRGFAVVADEVRKLAEKTMQATGEVGSA 45 S54262 94.7% 24.8% VETVAAMDMIAASSDKITSIVKVIDDIAFQTNLLALNAGVEAARAGD----AGRGFAVVASEVRALAQRSSEAAREITDL 46 HTR2_NATPH 100.0% 34.4% EQAVASMEELNEDVREIGEVSEMIADIAEQTNILALNASIEAARADG----NSEGFAVVADEVKALAEETKAATEEIDDL 47 HLYB_VIBCH 100.0% 29.0% DNATQVVSSLATQINGISSTLDTIRSISEQTNLLALNAAIEAARAGE----QGRGFAVVADEVRTLASRSAASTEEIQQV 48 TMPMRFDNA1 96.2% 19.4% KEASSQIGETLENIRSIEKLIQNIMRIARETNILALNATIEAARAGE----AGKGFMIVANEVQNLSNETNEVTKQIVEK 49 HSU62676 100.0% 36.6% EAAADAMDALDSEMADIGEIVDVIADIADQTNMLALNASIEAARTGA----DGDGFAVVADEVKTLAEESRDAAEDIESR 50 RLU81828 94.7% 23.3% RDAIGAMDRIQTSSSQIGRIIGVIDEIAFQTNLLALNAGVEAARAGE----AGKGFAVVAQEVRELAQRSANAAKEIKNL consensus/100% .t..t....h......h..h.t.l.ths.p.shLuhNtslpuuhsst.....spuF.lVA.EhptLu..s.....th... consensus/90% tt..t.httlttt.tpltpl.thIttIu.QTNhLALNAulEAA+AGp....tGcGFulVAtEl+tLAtpstttstpltth consensus/80% tps.pthppltppsppIsplhtlIspIu.QTNhLALNAulEAARAG-....tGcGFAVVApEV+pLApcotpustcItph consensus/70% ppsspshppltppsppIspllplIssIApQTNlLALNAuIEAARAG-....sG+GFAVVAsEVRpLApcotpusp-Ippl cov pid 161 . . . 2 . . . . 240 1 HSHTPIII 100.0% 100.0% VSEIQRDTADTVTDLVTTTDRIEDAVAQVEDAMASFEEIVTAVEATAEGIEQVSDATNEQAASAEEIAAMVDETADLADD 2 HTR1_HALSA 100.0% 33.3% VEKVTAQTEDVTASIQHTRTRVESGSETVESTLLHIRTIADSISEVSNSIDEIQRTTSEQAETVQSTATSVERVAGLSDD 3 D9090450 100.0% 21.8% ILSIQEETSQMSQLMEESTNEVVTGTQLVQKTKETLQNLAQISEEIDTVLDSISRNTESQRLASQMVTETVQNVASVAKA 4 S61831_ 94.7% 22.5% VTG--------------TKGQVVAGVEIVGRTQHAISSIAEQVVSINEAVTGIAREAECQVNDLASATSEIGGVAQAMNR 5 HSU75436 100.0% 47.3% VEQMQAETEETVDQLDEVNQRIGEGVERVEEAMETLQEITDAVEDAASGMQEVSTATDEQAVSTEEVAEMVDGVDDRAGE 6 HSU75437 100.0% 40.1% VDDVQADVADTVADMSELGDRVDAGSETIEAALAAVDDIGDQVEAANGSVQSISDATDEQAASTEEVVTMIDEVTDLSDR 7 TLPA_BACSU 100.0% 26.1% ISEIVKEIHTSLNVLQSVNKEVETGLVMTDETKQSFKHISQMTNQIASELQNMNATVEELSAGAQEISAASNDITAISKE 8 TLPC_BACSU 100.0% 27.2% IIEIQKDMNRSARSVEHVKTEAAEGVTMIQRTRDAFKEIAAATGEISAEISDLSASVTNISASAHQINDSFAANTADIKE 9 CPS_CLOTM 94.7% 22.9% IEG--------------TIKRTENGTKIARETAEALNKIVEGISKAATLVNDIAVASNEQAAAITQINQGIAQVSQVVQT 10 SYCSLLLH8 100.0% 25.2% VATIQAETNEVVNAMEAGTEQVVVGTKLVEETRRSLNQITAVSAQISGLVEAITSAAIEQSQTSESVTQTMALVAQIADK 11 FRZC_MYXXA 100.0% 26.0% ITEIREATAAAAGAAEASKSATESGEKLGAVAAQAVEGILAGVQETSDAARVINLATQQQRTATEQVVASMAEIEDVTRQ 12 HTR2_HALVA 100.0% 34.8% IEAIQEQAGDTVETMESTSTRITEGVSTVEETVDALETIVEYTEEVDTGIQEIDRATEEQARTAQDVMGTIDDLTTISQQ 13 MCPA_CAUCR 94.7% 24.0% ISS--------------STQQVSQGVSLVGQTGEALQRIVTKVGEIDALVTEIAASAAEQATGLNEVNTAVNQMDQVTQQ 14 HSHTPIVAV1 100.0% 36.5% IEEVQSQTATTVEEIRVAEQRVNDGAAAVEETVDAFGAVTENIQETTDGVQEISQAMDEQAQRSERVVSSVDDIATISQA 15 PSEPCTA 100.0% 29.4% IEELQVGAREAVATMTESQRYSLESVEIANRAGESLSSVTRRIGEIDGMNQSVATATEEQTAVVDSLNMDITEINTLNQE 16 MCPC_BACSU 100.0% 25.6% VKLIQLETKEASHAMVEASRMNDEQNSAIHETGEVLNTITAEMQSLVQGIDHIYAEIQRMSEEQLAISEAIQSISAISQE 17 DCRA_DESVH 99.6% 27.9% IAAIQQGSNDAVEVMTETRQQVEVTAGKAEDTGKVLSGIVGRAESIADMVRNIATASEQQSSTSDEINRNVTRINDLTEA 18 ATU600115_ 94.7% 23.3% INK--------------STSEVTTGSLLVQEAGKALANISSQIVVISQHVEMIARASHDQSSALQEVNSTITQIDQMTHQ 19 TDU84257 94.7% 21.4% LKT--------------LSSEIESLSVSSKTVEDKFSTIFNLSEQVKSMSDRLTEAMHEQENGSKEVLGAIKNINTVTVE 20 O30965-699 94.7% 26.3% IST--------------SSAQVKTGVQLVGESGLSLEQIVEQVTAMNATVAEIAVAAREQATSLREVSAAGDQMDKVTQQ 21 G2688521-727 94.7% 18.3% LKT--------------VDSIIAVINSEIDTIYKNFIDIQDNVDNNFSRHEKVDLTLAKHFKEIGEFKERYLSHDTKIRD 22 Y4SI_RHISN-734 94.7% 23.3% INV--------------STQRVERGKELVDSASELLKHIAARVDLIRTTVSNIAATATSQAKHLSEFQTTIAEIDQSTQQ 23 G2688522-692 94.7% 22.1% INE--------------IMDSITKTVNTSELTNKAFNQIFDSINLVVQVIEEINHTMQEQSIGSQEILKALNTMREITYE 24 VCU39068 100.0% 26.7% IHILQENSLLSVHVMDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEINSNSISIKDKADT 25 JC4735 94.7% 22.5% IDT--------------SSRQVAAGVDLAARSDTALGEIETLVTELDGLLDGIASAAAEQSSGISEVTAAVNQLDQVTQH 26 O34576-533 100.0% 27.5% VATIQNESIETVNNIKVVQENVSSGIVLSQETTGNFNEILNLVEQVTSQIQEVAAATQQLTSGVEVIQHTVHTLAAGTKE 27 G2688620-633 91.6% 22.8% ANR---------------------SLTVASRAGENFEQIVPGMEQTARLVKNISNESYKQSVQIEQFKNAIEQVSQLVQT 28 JC4736 94.7% 25.2% IET--------------ASNNVNQGVGLVHDSGQALREIVAGVEDVAQKIAEIVTASQETATGITEISNATTELDRTTQQ 29 HSHTPVI 100.0% 35.5% VAEVRAQTETSVAAMDRIQERVSDGVETVSETERSLSEIAGRIAEADTGVQEISNAMDDQAASVSDVTTAVGDVAALGEE 30 O29217-809 100.0% 24.1% VRNVQEETRKVIEATNKVKESSLQGSEGIENALMKAGEIAEAVNRINEMLGQVAAKAEEGLAKIEQLARNFEEVASTAEE 31 O24929-564 94.7% 21.4% IMV--------------IVQEINAVSSQMNLNSQKMERLSDMSKSVQETYEKMSSNLSSVVSDSNQSMDDYAKSGHQIEV 32 O06022-450 94.7% 30.9% IVE--------------MVETTDQTADRIGQTTTEIEEAITAVRETLDSLQEIRNAVDETATGVKEVAGARDHAASTEQV 33 AIR_ECOLI 94.7% 25.2% IDA--------------SADKVQSGSQQVHAAGRTMEDIVAQVKNVTQLIAQISHSTLEQADGLSSLTRAVDELNLITQK 34 TCPI_VIBCH-615 100.0% 26.3% ILKLQEQSQLADQVMTRNVSLIHETQVANRALIASFNLISDKVLEISNINSIVSTAANEQKIVTEDVAKQMEDIRYLVQE 35 MCPD_ENTAE 93.9% 26.3% IDE--------------SVSRVKHGSVLVENSGATMQDIVRSVTRVTDIMGEIASASDEQSRGIEQVTQALPRY-QVTQQ 36 D9090275 100.0% 22.9% VLQIQSETGSVMTAMEEGIQQVIDVTDKSEQSKRALEDIIEVSNRINTLVRSITADTVKQQENSGAVSNVMQSIELTAQE 37 PILJ_PSEAE 100.0% 25.2% VKTIQTDTNEAVISMEQTTSEVVRGARLAQDAGVALEEIEKVSKTLAALIQNISNAARQQASSAGHISNTMNVIQEITSQ 38 O32239-565 100.0% 25.4% VNGTQQEIHTVITYLESSFTEVEKGTENLTDTGQAMQHIKQSVTHVADSIKEVTDGLKQLTNQSITINQSIENIASVSEE 39 Y4FA_RHISN-830 94.7% 24.4% IGN--------------STAEVAKGAGLVSETGAALLDISKHILEISTQIEAIALSSREQASSIAEVNVAITRLDQLTQS 40 HSHTPIVAV 100.0% 37.3% ITEVQSQTTATVAEARAAEESMDAGIDAVEEVVDAFTAVSDHADETDTGVQEISDTTDDQASSTEEAVSMTEEVADLSDS 41 TPU569991 98.5% 14.8% LKEIEAVIGESG----HASAGVAQSFTDIRGKVDGFSTILADISGAVQVVGEENERTVERMRTVTGQLCTAREQGKVIAE 42 RLSPRLVCP 94.7% 25.2% ILN--------------SVDEVSSGVKLVRDTGEALKIIVDQIVLINTQLDAVTAASNEQSATLFEVNRTVNQMDQVTQQ 43 JQ1475 100.0% 29.0% ISALQERAQSAVTVMEQSSRQAHTSVAHAEEAATALDGIGQRVNEITDMNAQIATAVEQQGAVSEDINRSIINIRDAADT 44 DVU30319 98.9% 26.3% VTRIQTHTRDNIAAV-ETAMRERTASADATASGRVMDDIVSRVDETAGMVQSIAAASDQQAAAATMVGRNVEEVNAIAGD 45 S54262 94.7% 24.8% ILK--------------SGNQVRRGVDLVGKTGDALKQIVSSVSEISTLVSDIAVSSRQQSVSLAEINCAVNNLDQSTQQ 46 HTR2_NATPH 100.0% 34.4% IGTVQDRTQTTVDDIRETSDQVSEGVETVEDTVDALERIVDSVERTNDGIQEINQSTDAQADAAQKATTMVEDMAATSEQ 47 HLYB_VIBCH 100.0% 29.0% INRLQTESTRAVEAMEKGRSQSDVVVEFSAKANQSLTEINSQIDQINDQNIQVATATEEQSTVVEDINRNVEDINQLTTE 48 TMPMRFDNA1 96.2% 19.4% AREILESS-------QRSLENLEFMANLFETVGKTLQNMVRFMENNVKLLQEVRNSLDTSKESLSEKSAEIDSATKVLEE 49 HSU62676 100.0% 36.6% LLALQGQVSDVADEMRATSDTVSDGRATVGDAATALDDVVSFVADTDTAAGQIRAATDRQAHAASRVASAVDEVAGISQE 50 RLU81828 94.7% 23.3% INV--------------SGQEVAAGVGLVNETGDALLKIEEQINRISDSIASIVQSYREQATGLQEINGAINQMDQATQQ consensus/100% h............................t.....h..h........t.......t..t..................... consensus/90% l.t................t....s....tts.tthttl.t...thst.httls.s..p.t.t.tth.t.htphtth.pp consensus/80% ltt..............s.pphttssthsppshpshppI.t.htphsp.hpplstsspppsts.pplstshtphsthspp consensus/70% lpp..............stpplppusphsppstpshppIsptlpphsshlpplssuspcQutshpplspshpplsphspp cov pid 241 : . . . ] 284 1 HSHTPIII 100.0% 100.0% I--------------TTAVADIVSQTEAQSTILXDLDESVSELH 2 HTR1_HALSA 100.0% 33.3% T--------------TALASDAESPVIGQRESAEEIAASLEQFQ 3 D9090450 100.0% 21.8% T--------------SDKSQLVSQSLQSLAKTAVDLQTAAGKFK 4 S61831_ 94.7% 22.5% S--------------AALAGAALASTDDLHGVIVELGETVRRFH 5 HSU75436 100.0% 47.3% I--------------AAALDDIADATDQQVRTVEEVRETVGKLS 6 HSU75437 100.0% 40.1% T-------ATESQQVSAAAEEQAASVSEVAGRADDLDDQVSTLN 7 TLPA_BACSU 100.0% 26.1% SSDGIQDIAASAEEQLASMEEISSSALTLERMSEELRDLTKQFK 8 TLPC_BACSU 100.0% 27.2% STKNTRQAAALTEEQFAAMEEITAASETLSQLAEELTGIISQFK 9 CPS_CLOTM 94.7% 22.9% N--------------SATSEESAAASEELSSQAELLKRSIAKFK 10 SYCSLLLH8 100.0% 25.2% N--------------SSEASGVSATFKELLAVAQSLQEAVKQFK 11 FRZC_MYXXA 100.0% 26.0% T--------------TQASKQATGAAAELTQLAGRLAELIKRFK 12 HTR2_HALVA 100.0% 34.8% TATEADTVAGAAQDQSASIEEVSDSATELRQRADDLESLLDRFT 13 MCPA_CAUCR 94.7% 24.0% N--------------AAMVEQSTAATHSLKGETAELVRLMARFQ 14 HSHTPIVAV1 100.0% 36.5% T--------------ADRAENVSAASEEQTASITEVTSSLQSLA 15 PSEPCTA 100.0% 29.4% G--------------VENLQATLRACGELETQAGRLRQLVDSFK 16 MCPC_BACSU 100.0% 25.6% S--------------AAAAEEVNASTDEQLVTLDKVKHSTETLK 17 DCRA_DESVH 99.6% 27.9% S--------------RDGCGKQAMPIRQVEGMAQRLEALVDGFR 18 ATU600115_ 94.7% 23.3% N--------------AAMVEETTAASMALAAEADTLTTLISHFQ 19 TDU84257 94.7% 21.4% V--------------QAGSEEMLKGGEGVAEEMLKLDNLTRMIT 20 O30965-699 94.7% 26.3% N--------------AAMVEETTAAAQSLTHETESLAELLRRFR 21 G2688521-727 94.7% 18.3% A--------------KNMYKEIFNNHYFISGKFNNFSQDLKEFK 22 Y4SI_RHISN-734 94.7% 23.3% T--------------AAMAEESDAACRSLNAEAQHLLELIQQFE 23 G2688522-692 94.7% 22.1% V--------------KIGSNDMFRGNKEIISTIKLLGEINITVS 24 VCU39068 100.0% 26.7% L--------------SSLGNKISQQAYSQKALIGHQDDLISKFI 25 JC4735 94.7% 22.5% N--------------AAMFEENSAATQGLLHEARMLKEFSAVFR 26 O34576-533 100.0% 27.5% TSANTEAVANSSQEQLHSMGEISYAAESLSQLAEELQTVINRFK 27 G2688620-633 91.6% 22.8% T--------------ASSSEELSAMSEKMLESVKDLKESVDYFK 28 JC4736 94.7% 25.2% N--------------AAVFEETNAAVRSLQGEATALAEAVATFR 29 HSHTPVI 100.0% 35.5% T--------------ATEAESTADAAAEQASTLSDVAAQTETLA 30 O29217-809 100.0% 24.1% N-XX-ETSAAIEEQTAAVQQVSIAMEKVNEIANATLQTIIENFR 31 O24929-564 94.7% 21.4% MVSDFAEVEKVASKTLADSSDILNIATHVSGTTMNLDKQVNLFK 32 O06022-450 94.7% 30.9% A-ATTDEAVDKLTELEDRLDNLSQIASEQHDRVAEIEDMVDELV 33 AIR_ECOLI 94.7% 25.2% N--------------AELVEESAQVSAMVKHRASRLEDAVTVLH 34 TCPI_VIBCH-615 100.0% 26.3% N--------------LSAMERTKQANQNISDLTTNLNDALSFFK 35 MCPD_ENTAE 93.9% 26.3% N--------------AALVVESASAAAALEEQAITLADAVAVFR 36 D9090275 100.0% 22.9% T--------------SQESQRVAGSLQTLVSISRDLLTSVERFR 37 PILJ_PSEAE 100.0% 25.2% T--------------SAGTTATARSIGNLAKMASEMRNSVSGFK 38 O32239-565 100.0% 25.4% SAAGIEETFSITEQSAHSMDQVLLNAEELEQLANELNEKMGQFT 39 Y4FA_RHISN-830 94.7% 24.4% N--------------AAMAEETQAASWTLSGEADYLMQLVDRFD 40 HSHTPIVAV 100.0% 37.3% TAGEAQSVSAAAEEQAASMSEISDSVESLSGQAEQLKALLSEFE 41 TPU569991 98.5% 14.8% V------CTRGAAHAERLTRDAQKVCAEVETMIGNVEVLTEVVA 42 RLSPRLVCP 94.7% 25.2% N--------------AAMSEESTAASTALAIEVKQLRGIVAEFQ 43 JQ1475 100.0% 29.0% N--------------VQTGQNNLQSAKSVAQLTSALSELAKQFW 44 DVU30319 98.9% 26.3% T--------------AASMSHFAGTLEDIFSQVQELFSMIEVIS 45 S54262 94.7% 24.8% N--------------AARLEEATAASESLTTSANALFETVQQFH 46 HTR2_NATPH 100.0% 34.4% T--------------ASDAETAAETTETQAESVKEVFDLIDGLS 47 HLYB_VIBCH 100.0% 29.0% T--------------SHVADELSRASASLQRLSSQLDKLVGSFE 48 TMPMRFDNA1 96.2% 19.4% T--------------AGGFTTINRVINSVITAQRKLKDLKI--- 49 HSU62676 100.0% 36.6% TAAQATAVADSAATQTDTLSSVDDAAADLADRAAALDDLLAEFD 50 RLU81828 94.7% 23.3% N--------------AAMVEETNAACQELLQQGRLLQDSAGRFV consensus/100% ............................................ consensus/90% s...............t..pt..t...t..t.h.tl.t.ht.ht consensus/80% s..............ts.hpp.ttsstphtt.htpltp.htthp consensus/70% s..............sshhpphstssppltt.sppLpphlppFp