cov pid 1 [ . . . . : . . . 80 1 Q9VLA6/57-147 100.0% 100.0% RFVNLVRTHKCLYDKK-VPEYRNRDNQEK------AWVLISKET------------RESVIHCKERWRNLR---ACLSRY 2 Q9VUE6/17-103 95.3% 38.4% KICHLVKLHPCLYDRH-DDNYLRKSTVKN------AWKEISNEM------------RNSVKSCKERWRNIR---SSYARS 3 AAG02972/13-10 96.5% 33.7% NFIESVKNYPCLYN----TQFANKYNNKK------AWIEIAKKY------------NSTVDECRYKWRKLR---VSYMRS 4 Q9VYI4/9-100 100.0% 31.0% RFVQFVENQPCLWNYT-HPGYSKKEDVQR------AWQQVANDI------------KDTVRNCRERWRTIR---SSFLRS 5 Q9XUX7/36-133 98.8% 21.3% LFLQEVEQYPCLYDLT-DKHYKDREK-HD------FWIKIEKDLGFLA--------EDRGSNAIKIWNSLK---SEYLRA 6 Q9XUX3/108-205 98.8% 21.3% LFLQEVEQYPCLYDLT-DKHYKDREK-HD------FWIKIEKDLGFLA--------EDRGSNAIKIWNSLK---SEYLRA 7 Q9VW28/38-127 88.4% 20.0% ILISLVSQEQSLYNPK-HPHYRSTKIKDE------KWLEIGSNVGWS------------DVQCKSKWKAMR---DQYCRE 8 Q9VW28/315-407 91.9% 16.8% ELITLIQQEDMIYNYG-NENYRNAKLKME------VWEEIARKLKKS------------VKQCRLKWKALR---DQYARE 9 Q9VIM6/2-93 89.5% 19.8% ELIKLIERHPILYDKD-CARSVKNAAQKD-----AAWKAISQKLGAS------------ERACITRWKSIR---DRFGKE 10 Q9VIM6/137-228 89.5% 20.8% QLIELVKSHPVLYDRH-KIRVSKNLAAKN-----EAWREISENLNVS------------EELCYNRWKKLR---DRFGRE 11 ADF1_DROM/12-9 82.6% 15.6% NLIEAVKLNPVIYDRS-HYN-YKHFVRKA-----QTWKQIAETLGVP------------EQKCTKRWKSLR---DKFARE 12 Q9VRZ6/11-99 83.7% 18.4% KLIDLVEPNPVLYKRS---GLSN--YDAMKAKT-DIWARIAEMMGCD------------VDFCLMRWNNLH---YQFRKE 13 Q9VSL0/4-96 84.9% 20.8% RLIELVRANPKLYER----ELRNAPYEAHKKRHPEIWSSIATSLNSE------------ASACVSRWNHLV---AKQRRE 14 Q9V5X2/2-98 89.5% 20.8% QLIDEVAQHGVIYNRQ-KYYLNGGANGGKYETKDEAWQLIAMKLRTD------------VDTCKKRWKYLR---ERYVSQ 15 Q9VBP5/29-120 90.7% 15.8% GLIREYRSHPVLYDRS-NKRFKDKLYVAH------IWEQIAHKLGYD------------ATSIRERMTTLR---NRYNIE 16 Q9N5M0/119-215 94.2% 21.6% NLILEVRRHPCLYDVR-DPKYRHGDCRTQ------AWGMIIDKLRYPGT----------VPSIYKQWKKHR---DRYVRE 17 Q9N5M0/6-97 88.4% 19.6% RLIEAVRHSRCLFDNT-DRQYRNTEYKNR------VWQRLVTVLGFDGD----------PRMLSARWKQLR---DKYGKE 18 O45233/7-100 90.7% 21.6% RLINEVRKYPCLYNHS-RRGSGDTMERQR------LWESIAKNIDPNCA----------AEFAKKRWLQLR---DRYRKE 19 Q9W1C8/3-105 97.7% 15.0% DFIEEYKSNPCLWKAD-SADFR-NRSRRQ-----EAYAKL-IEVATKHG------EMYNVERTKQKINNLR---CAFRHQ 20 Q9VSB8/22-121 96.5% 14.3% AFIQTYRDLPVLWDTS-LRDYT-NREKRA-----EAYLRL-VPIYHYLK------RDATVEDVKKKINTLR---TNYRKE 21 Q9VYJ7/2-96 94.2% 17.5% EFISCYQYFTALWDSS-SPDYL-SKQKKE-----PGYQEL-LKILRRVN------SNCSIQDVKRKINSLR---CCYRRE 22 Q9VDL6/12-107 93.0% 10.3% EFIEQYQEEECLWQPK-HNDYS-NHTARN-----KSYDRL-VEKLKEVE------PNPDRAMVVRKINSLR---SAFRRE 23 Q9V4V6/84-180 94.2% 13.4% CLLREYERTEKLWNPR-HPDYK-YNAKR------SAYGDLAGPLESICH------RQLSGAEIFAVLKELR---CRYRRE 24 Q9V4V6/214-311 94.2% 14.4% FILDAFKRQECLWNPQ-HYDYT-TCCKT------ELFRDISVQLQEELN------YELSGEECCNEIQKLR---TRYRKE 25 Q9V4M8/198-296 94.2% 11.3% HLIQAYKEHPCLWNPS-DEHYQ-DEPARS-----MAYEAIMERMDRKAN------VLFTVEELKKTLEQLH---VQYTLA 26 Q9VNP3/59-151 96.5% 18.7% KLIQMVHDNPILWDSR-LPNFKGAEEEKN-----RAWEHIGREFN------------APGRRVARAFKSLR---ESYRRE 27 Q9VNP4/9-102 97.7% 19.8% RLIELVRLNPILWDCR-LPHYKRSDKRKA-----IKWNELGRLFN------------VNGERVQRTFTSLR---EIFRRE 28 Q9VQ77/4-94 94.2% 15.4% RLIQEVSKRRCLWDTN--MSISYRNQDAA-----LQWASVAQIMQ------------QDVSICKKRFKGMR---DSYRAE 29 Q9W0N1/2-96 96.5% 19.1% RLIFEVQQRRALWDAR--HPDHANRPETQ-----RLWNAVAEATG------------MDVELCRTKWKNLR---CSYRRS 30 Q9XV35/8-112 98.8% 12.9% CLINAIRNRPVIWDKN-YFGESNYRTLKT-----SCLREVTSELNSMFQMP----IKFTCEDVRSQWKNLK---DTFVRK 31 Q9XWS3/49-149 94.2% 8.9% AMCEAIAHRPGLWDS---TREKVSSAARK-----NLFAEVVEVINQQFVLS----PPLTIEEIEKHWKNLK---DTYVKT 32 Q9W3Q2/20-114 90.7% 18.4% TLINLVRQNPVLYNYK-LQPNQRRRSDVLN-----GWQEVAQQIGNKYT----------VQEVRRKWKNLR---DTFHQY 33 Q24156/7-100 93.0% 25.3% MLLRSVEKQTALYDRT-DENYRKRLPSEN------AWDMVASEVGES------------VEKCKRRWRQLR---NDYTRW 34 Q93381/132-221 87.2% 14.6% DIIYAVRKRPILWDQR-LICHRNSNLSRR------AWDQLDLELGIDEE--------YPLARRKQIWKSKR---DYFVSA 35 Q9W2K3/11-102 89.5% 21.9% LLIQTIRETPSLYDPQ-LPSFRLSQRKEE------DWAKVADLLNIS------------ISDARRRWTCLR---DRYSRE 36 Q9V5Y9/19-112 93.0% 26.3% DFIEIVKKYDVVYNNH-NPDYKNVEVKLK------VWTQIADEIGLS------------VEASKRKWKNLR---DSYTKY 37 Q9VXS5/14-99 83.7% 15.8% HLLREIALRPSIWDSR--IKFSLRRPQIP-----IDWLDVSNAVGLG------------VDECKRRWKSLR---NNYRTK 38 Q9V4M3/22-112 89.5% 12.6% RLIAAVSRRPMLWLRN-NANGQKRSDITP------VWFEVGQDVNLP------------ADICRIKWGHLR---DNFRKV 39 Q9VUK9/11-108 93.0% 15.2% QFIHDIEERPAIWNRN---FHCNKAFLEQ------MWDELSGAHKLP------------KIVLKAKWKGLR---DNFRVE 40 Q9VF93/28-117 88.4% 17.9% KLIEIVQRDEAIYNPR-HKYYFCRPYVEN------FWREVDLKLEKN------------PGASLAKWTNLR---ISFRRE 41 Q9V8C0/31-123 94.2% 21.5% RLIKLVRANPAIYDVS-HPHYRRNPVRVD------IWDRIANELGAS------------SRFLQTKWKNIR---YNYLQE 42 Q9VWR0/31-129 94.2% 20.2% RLVDLYREQPCLWKIT-LPAYKDADMKRS------SWEKIASQLGSHLS----------AEFIRCRMRNMRYQLNVYKLQ 43 Q9VHL0/17-120 94.2% 19.2% EFIDAVHKRSIIWERS-HPNFHNRELRDE------AWQQIGHELCSNFDDSSEPEKQEIVKTLLKRWKNTR---DSYLRV 44 Q9VXQ6/255-351 93.0% 12.2% FLIHSYQRNPFLWDHG-NAQFRDRVKRAR----FLDWIVLEFKSRFNIS--------LAKDAITRKWDNLR---TVYKRE 45 O01474/89-193 98.8% 15.8% QFLRLVSDKPFLWHTK-DSDFHRKKEKGMP-----AWAEIERTCNTFMGKG-----RTPGKTAAALFKKMA---TTYKSH 46 O44979/99-189 90.7% 14.9% ELLDMVKEEPSIWDKIRCVDFGCHQRMRQ------AWCSISLKLG--------------GWGAIQHVHMLK---QLYRKK 47 Q9VTH8/9-102 90.7% 8.2% QLLKAIKKYPEIWDSN-NKLHMCRSVTSP------MWTEIAEQFGGHVP----------TVKLQSIWSQMK---YHYHNL 48 Q9VTH8/223-319 94.2% 12.4% RIIDAIKTRPSLWAGRQRSEKGQGQSRTS-----AVWKEAAMEMGLT------------PTLMQTRWSIIK---QRYVDE 49 Q9V7M0/17-113 96.5% 18.9% KLIRLYRSNECLWNPK-SPGFHSGSAKDD------AWRQITRRMNCG----------LTPDQVELQVLGLR---HYYSKE 50 Q9W1E7/28-127 95.3% 17.2% KLIELYRSSDCLWNHY-SELYKNKDCRAK------AIESICASLEIT------------KHDYGKKVHNLR---NQFNAE 51 Q9VAC6/7-99 90.7% 14.6% QLISEYRSRRGLWDMT-CDEYRKKDVKQR------LLNEVSQVLGGNIP----------INELEKKFHTLR---TQYHRE 52 Q9V638/755-842 88.4% 17.2% KLTRLLREYPSLWCTR-HPDYGKKEVTNK------QWRVIASHFPRG-------------DDIKLRWKNVR---KRYVRI 53 Q9VXQ6/376-474 96.5% 16.5% KLLSMVKRYQCFYNRF-DPDYRSKERRGE------GLHQMAIELQQLID--------VTTIQISKRISQLR---FDYSKQ 54 O80512/68-164 86.0% 6.9% ALIDAYRDK---WYAL-----NRGNLKAN------HWEEVAEAVGANCP---DVILKKTAVQCRHKMEKLR---KRYRTE 55 Q24147/4-84 81.4% 11.7% KILQDIAKEKVLHPNN---GGASKQEQEE------AWARIGRLNKLS------------VHESRSIFIVLQ---KKYEQE consensus/100% .hh..ht.....a.......................h..h..........................h..h.......... consensus/90% .hlp.hp....lap.........t...t........a..l...h..................h..hhpth+.....a.t. consensus/80% phlp.hppp.hlas.p...thtttt.ttt......hatpls.tht..............ht.hhpphppl+...ppahpt consensus/70% pllp.lcppssLas.p...papppp.ppp......hWtplsppht..............spthpp+appLR...spat+p cov pid 81 . 1 . ] 119 1 Q9VLA6/57-147 100.0% 100.0% IK----QQSGSEPQH----KPYYLT---EHMAFLLPFLK 2 Q9VUE6/17-103 95.3% 38.4% IK----LHHGAN--------TYYLN---SELKFLQKHIT 3 AAG02972/13-10 96.5% 33.7% LN----RRQSSDNIT----REYYLT---NYLRFLRPFIK 4 Q9VYI4/9-100 100.0% 31.0% LKL---ARTQTGRGK----RKYYLS---KYLQFLVPFTK 5 Q9XUX7/36-133 98.8% 21.3% RKKKCPSGSGLDDIE----NSFDFY---QDMSFFEASLS 6 Q9XUX3/108-205 98.8% 21.3% RKKKCPSGSGLDDIE----NSFDFY---QDMSFFEASLS 7 Q9VW28/38-127 88.4% 20.0% LKRAKACS------K----AVKWK--YFKELDFLRPYAL 8 Q9VW28/315-407 91.9% 16.8% HKRLRTLMHID---A----TSRWK--HYNSLSFLQKYIQ 9 Q9VIM6/2-93 89.5% 19.8% FRRFQERPDEP---------TYWD--MFPRLLFLKDHYK 10 Q9VIM6/137-228 89.5% 20.8% FRSHQINQSTP---------ITWR--YFNDLLFLGRHFR 11 ADF1_DROM/12-9 82.6% 15.6% MKLCQESR--------------WR--YFKQMQFLVDSIR 12 Q9VRZ6/11-99 83.7% 18.4% FR--RADTSG----------STWP--YLERLRFLAEIQP 13 Q9VSL0/4-96 84.9% 20.8% LAKEKAGGTG----------SDWS--LLPHLKFLQHHHH 14 Q9V5X2/2-98 89.5% 20.8% RKQGDPPVYEH---------LSRP--YLEKMKFLDQHIQ 15 Q9VBP5/29-120 90.7% 15.8% KRRVENGLSTQS--------SQWP--LFESLQFLGDHIR 16 Q9N5M0/119-215 94.2% 21.6% KRRLRNLGDPNVQ-D----VSTWE--MYDDMAWIDQHLD 17 Q9N5M0/6-97 88.4% 19.6% -KRKQKYGNE----K----SS-WQ--YFKHLHFLDPHMT 18 O45233/7-100 90.7% 21.6% LKIAIKNGFV----T----PVRWC--YFNQLSWLDPFLK 19 Q9W1C8/3-105 97.7% 15.0% LRKYNEVKKKGEKYE----PYCPKRRYFESLMFLKDEEI 20 Q9VSB8/22-121 96.5% 14.3% LKVVESALRSGSLHS----PRCWT---FQELDFLRNSEK 21 Q9VYJ7/2-96 94.2% 17.5% FKKVQ---ESVNGYQ----TRLWW---FHLMDFLKPVLN 22 Q9VDL6/12-107 93.0% 10.3% FRKTS---TKGD-YA----TRLWY---YDKLLFIADHKP 23 Q9V4V6/84-180 94.2% 13.4% LKKVN---ALGGKYK----SRLWY---FERMDFLRCVIE 24 Q9V4V6/214-311 94.2% 14.4% LRMVI---KHKGLYL----PKLWC---YDEMEFLQPILQ 25 Q9V4M8/198-296 94.2% 11.3% LETKQ----RGKLVG----LAARY---FAKCEFLSVAPV 26 Q9VNP3/59-151 96.5% 18.7% LAH---VKLMGNG-F----KPKWS--LYEAMDFLRDVIR 27 Q9VNP4/9-102 97.7% 19.8% LNH---EKMLGTTRF----KSKWE--YYDAMAFLKEVIR 28 Q9VQ77/4-94 94.2% 15.4% VRK---IQQKRIEMS------HWP--YFRSLEFMRQIFD 29 Q9W0N1/2-96 96.5% 19.1% NRRSGILKHQQSPSP----GHQWS--YAEAMSFLDGQRE 30 Q9XV35/8-112 98.8% 12.9% LRWVHEGKYMEDAMK----EPTWK--FYRMLTFLDEKEA 31 Q9XWS3/49-149 94.2% 8.9% RRKLTFDH--DGCPI----RPKWK--FFDSLMFLDSVNQ 32 Q9W3Q2/20-114 90.7% 18.4% RLRTPKYIEGR--------LSKWR--YAKELDFLSKVYQ 33 Q24156/7-100 93.0% 25.3% CNADANRRRNGQ--R----RLAYP--LADELRFLDRHLN 34 Q93381/132-221 87.2% 14.6% VNAAN--------------LRKWI--YADALEFYRPMIN 35 Q9W2K3/11-102 89.5% 21.9% LKQKRLHPSGE---------FGHN-DFFRKMDFLRDFVR 36 Q9V5Y9/19-112 93.0% 26.3% LRSFRVGTKTSK--K----YQYWA--HADHMDFLKPFQG 37 Q9VXS5/14-99 83.7% 15.8% IHQGN--------------AWSWP--HSKQMEFVRDVFP 38 Q9V4M3/22-112 89.5% 12.6% YIRNNLSNETP---------SSWR--FYNDMRFMEPAVH 39 Q9VUK9/11-108 93.0% 15.2% YKRIPRADNGDFMVDPATFESKWL--HYYALLFLTDHMR 40 Q9VF93/28-117 88.4% 17.9% YTNYLEEKVP----------PCWS--YFDRMFFLHPYLR 41 Q9V8C0/31-123 94.2% 21.5% VKAIETGQANPNVRK-----RRFT----EDLSFLQNTAQ 42 Q9VWR0/31-129 94.2% 20.2% MIEYQMTSGKGKPPE-----KPYY---VDRFAFLEQEDG 43 Q9VHL0/17-120 94.2% 19.2% NRLRQSGEEVAR--------ASYI--YEKELSFLLNVKA 44 Q9VXQ6/255-351 93.0% 12.2% CNRMALEKTNIS--------TLWY---FKELHFLNEVYS 45 O01474/89-193 98.8% 15.8% LTRIQKAPSGSAVTPK---KDLFC--YAELMSFMDEDIT 46 O44979/99-189 90.7% 14.9% RDLYNVQYLRSG--------REFE--YCEKLSFLKDVLE 47 Q9VTH8/9-102 90.7% 8.2% VHRQILHKDRFN--------TKWE--HFEPMSFMYNITV 48 Q9VTH8/223-319 94.2% 12.4% LQKERHAQYSHQSFR-----STWE--HFDRMSFMREILL 49 Q9V7M0/17-113 96.5% 18.9% LAAIRNSQIEGYSYS-----PRYS--YFEDLHFLGNLEE 50 Q9W1E7/28-127 95.3% 17.2% LKKLERRLEESGGDRDSEKACRWE--HFKTLMFLRSVIE 51 Q9VAC6/7-99 90.7% 14.6% ISRMKRKEPYN---------SKWFG--FKNLVFLSSPYA 52 Q9V638/755-842 88.4% 17.2% ERRLKQGKRFKG---------YFD----KATNYLENRDR 53 Q9VXQ6/376-474 96.5% 16.5% KMERLNSERLGKKFI-----ANYL--YYDQMHFMDDDIP 54 O80512/68-164 86.0% 6.9% IQRARSVPVAR-------FISSWV--HFKRMEAMENRPE 55 Q24147/4-84 81.4% 11.7% KLKGN---------------SAWK--LFSLMHQIHQDPK consensus/100% ..............................h..h..... consensus/90% ht....................a.....p.h.Fht.... consensus/80% hp....................a....hpthtFlp.h.t consensus/70% hppht................ha....hcphpFLpphhp