cov pid 1 [ . . . . : . . . 80 1 Q20219/1325-1466 100.0% 100.0% DDDLPAGWWYAKVKSN--PPSGYPNMCTMSVRVQ-SSLQIVTGFS-------TKIGNDFPLPDP---IQDSTENRLISYV 2 Q19853/1328-1469 100.0% 77.5% DADLPAGDWYVKIKTN--PTNSNPPYCSLSVRVQ-SSLQIVSGFA-------TKIGDDNPQIDP---IQDFSSNRLITYV 3 Q20219/178-316 85.2% 11.2% YLHLPPGQYMLGPRAD--TSEQ---FCTMMMSSR-SSIHVSGGFT-------SGDQAERS-DYPNLKFTYFDTESVVAIH 4 Q21884/1393-1535 83.8% 21.7% SGHNA-GTWSVTVKST--GS------CYLQARVN-SPLQIIPRFT-------NDQGDDFGSGTPRV-GAGSTSASYITFR 5 Q23409/399-525 89.4% 26.8% INHLSRGIWKIRVRAN--GQ------CSISIRSQ-STVQVATRFT-------TNIHDDVGKEEP---NKNTDMNRLVIFT 6 Q22774/1173-1312 83.1% 21.3% VNIVPGGLWKVTVQSN---SGS----CEIQARSQ-SDIQVFFGFV-------TDPRNDKPSTYANIQSNSNY---LIAYP 7 Q23409/881-1015 85.2% 19.2% TGEQP-GVWTIDVDYG--MSNSGP--CTLNIRTQ-SKLEVDLGFT-------QDVASDQGYHDG----------GAVLFP 8 Q19853/181-319 85.2% 9.4% YETLAPGQYLLGPRAD---SGD--EFCTMMMTAH-TNIQVTGGFT-------SGDQPERS-DYPTLKFAYFDTESAVVLH 9 Q22774/64-196 89.4% 22.3% YADLPSGGYTLSIDNQGVPTSE----CIIEVNGDPSGLKAVDGFV-------YSPQSDDP-PYG-----ESAINGVPMYM 10 Q22774/1664-1798 85.2% 14.7% GATRA-GTYRILLTGT--GGNN----CFATVRGR-SNLELFLGFVDSSSDGHNGATNDAT-HYAPVNLENNT----IVVH consensus/100% ....s.G.a.h..p.t..........C.h.hpsp.o.lph..tFs........t.ts-.s...s..............h. consensus/90% .tp.s.G.ahlt.pss...s......C.h.hpsp.Sslpl..tFs.......pt.ts-.s...s...........hlhh. consensus/80% .sphs.G.ahltlcss...stt....C.hphpsp.Sslplh.GFs.......ss.tsD.s...s....t..s..thlhhh consensus/70% hscls.Ghahlplcus..sosp....CphphRsp.SslplssGFs.......ss.tsDts.t.s....tt.s.tthlsah cov pid 81 . 1 . . . . : . 160 1 Q20219/1325-1466 100.0% 100.0% HSV-----DNENRV-PILTDAILWDAYNGT------------FYNGLKYQVRFG-CQFAWVT-----Q-DFPCPNGDSQA 2 Q19853/1328-1469 100.0% 77.5% HSV-----DNENRV-PIMTDAILWDFYNGT------------FYNGLKYQARFG-CQYGWVS-----Q-DFPCPNSDNQN 3 Q20219/178-316 85.2% 11.2% AQGL----DFPGQIQAIGFTGAENHISRYIPMTTRFNCTYPYILER------YT-CRKTSNN-----DAGH--------- 4 Q21884/1393-1535 83.8% 21.7% VMD-SYNSDSHNFGSTILTVSSAN-TDPET-PWETGIFTNATVLVRD--P--VN-CASQFVTPLITWTSTY----MK--- 5 Q23409/399-525 89.4% 26.8% YGV-----ENKNGA-----EYAHFYYDNFT------------MLQAQSLTYRDN-CMFSFIS-----T-PFSCPNFY--- 6 Q22774/1173-1312 83.1% 21.3% TGVLPYTPDTKPSMEGKL-NYAVL-SSNRTITNSLPLGNRACTYATISAP--FS-CPVTDGS-----LSD---------- 7 Q23409/881-1015 85.2% 19.2% RGG-----DFENAIVADISEGGTLTYAQIFDLDETRIAWASPLIKR------DG-CAYPFIS-----EYTFQC--YRNQ- 8 Q19853/181-319 85.2% 9.4% AQGL----HFPGQIQAIGFTGAENHISRYIPMATRFNCTYPYILER------YT-CRKIGNN-----DIGH--------- 9 Q22774/64-196 89.4% 22.3% AAHV----DNSPAQ----VQSITIRQGNSL----------APVYRA-ALTRRYQ-CGYEYYA-----G-QWQC----QLG 10 Q22774/1664-1798 85.2% 14.7% ANGL-------GAG---IVRYVQI-VMPRF-----------GLLHTTEMRKRDSACSYEWYA-----TTPFSF--DYDQ- consensus/100% h..........s.................h............hh.t.......t.C.....s.................. consensus/90% hts.....c..sth.....p.h.......h............hhtt.......s.C.h...s.....t.sa......... consensus/80% tts.....-..sth...h.phh...h.phh............hhpt.......s.Cththhs.....p.sa......... consensus/70% tss.....D.psth.s.hhpusth.hsshh............hhpt......hs.Cthtahs.....p.sa......... cov pid 161 . ] 180 1 Q20219/1325-1466 100.0% 100.0% NEFGVLHVGEDEFGNTFQRL 2 Q19853/1328-1469 100.0% 77.5% NEFGVLHVGEDEFGNTFQRL 3 Q20219/178-316 85.2% 11.2% --NLIQVEGVTNSGYKFRRI 4 Q21884/1393-1535 83.8% 21.7% --FVVR--GKDSNNNDYQRT 5 Q23409/399-525 89.4% 26.8% --YQMLITGIDDSGYLYQRI 6 Q22774/1173-1312 83.1% 21.3% --FSIKFTGIDQYGYAFERY 7 Q23409/881-1015 85.2% 19.2% --FVVALDGLDFEGHPFRRT 8 Q19853/181-319 85.2% 9.4% --NLLQVEGMSDNGYVFRRI 9 Q22774/64-196 89.4% 22.3% NAYFYHIDGVDANGFNFRRT 10 Q22774/1664-1798 85.2% 14.7% --YYVIIYGSSEFGSNWKRN consensus/100% ....h...G.s..s..apR. consensus/90% ....h.h.G.st.G..apRh consensus/80% ..ahlhh.G.sp.G.sapRh consensus/70% ..ahlhh.GhDp.G.sFpRh