cov pid 1 [ . . . . : . . . 80 1 Q9FF96 100.0% 100.0% FEYCTKNGH----DYGSISQIWVSPSDG----------PQENPTITIHLF--GSASKDISAG-TLVYVTYRSG-----DF 2 Q9FF97 99.2% 72.7% FEYCTKNGH----DYGVVSWIEVFRVGP-----------QENPTLTINVF--GTATKEISAG-TLVYVAYRSG-----DF 3 gi|4322563|gb|A 91.3% 21.1% LEYCNDPS----GDILDIKQVDLSPNPP-----------LPGKTLAITAS--GTLREKIEDG-AYVLLEVKYG-----LI 4 BE759157An 90.6% 19.7% LVYCNNPS----NYILQIERVDLTPNPP-----------LPGKTLTIQAT--GTLNEKIEQG-AYVNLEVKYG-----LI 5 AI330141Nc 85.0% 19.5% -------------DIVTIEEVILTPNPP-----------EAGQTLTIEAS--GIVKEAIEEG-AYVNLQVKYG-----YI 6 gi|2132419|pir| 92.1% 20.0% LYQCDILDK----QLVEIKEVNLDPNPP-----------VRGENLTISAN--GEVFETIEEG-AYIDVEVRLG-----YI 7 BI452083Gi 91.3% 20.5% ISDCXNXN-----DILRIDYIHLSPDPP-----------LKGRQLKIDAA--GYLKEEVGQG-SYIDVTVKLG-----LI 8 gi|18399355|ref 90.6% 16.4% VHYCDNNEE----YEVKVQGVDITPYPIA-----------RGEPATFRIS--ANTDTEISSG--KLVIEVSYF-----GW 9 gi|10178104|dbj 90.6% 16.4% VHYCEENAE----YEVKVKEVDISPNPIA-----------PGEPATFTIS--ANTGREISFG--KLVIEVSYF-----GW 10 gi|7635455|emb| 89.8% 23.4% FTYCDKRL-----DPVKVTGVKISPDPVV-----------SGAAATFKIF--GSTGEDISGG--KVVIRVLYV-----GI 11 genef02100 89.8% 16.0% WSNCGPN------EKFKITSVSIVPDPP-----------VKGKLITISGS--GVLGENLTSG--QVAILVKFG-----LI 12 gener09004 78.7% 20.5% WKSCGKST-----DTFQIKNVPISPDPP-----------VRGQTVSIYAS--GELKDPISGG--DVNIQIKFG-----II 13 gi|13810234|emb 92.1% 16.3% ASYCADWDR--GDDHVVVDYINLIPNPP-----------AAGKNLTIETE--INVGTTVLNG-SYVDIQVKYG-----FV 14 Q9AST8 89.8% 21.8% FQTCDTGKE----YPLKVSSVEISPDPVK-----------RSGNGEITIT--GVTNKEISDG-VTVNLKLAVG-----MF 15 BJ206944Pp 90.6% 17.2% WKLCDSHA----NYDVVLKNVSVSPDPV-----------ISGEDVTFIVP--AYTEKDITKG--SVVVSVSFH-----GI 16 BE238152Cr 90.6% 16.5% WTPCDAGL-----TEFSPSSVVLTPDPP-----------VIGSPATFVIS--GDIGNELPGG--SVDMTVSFS-----GL 17 numgf1161 91.3% 17.6% WSYCPGNI----DATFTIDTLTVSPDPP-----------LIGKAAFVKLA--GSLSDEVTEGESVFSLQYYIDGA---WR 18 Q9MAK7 89.0% 25.8% FKYCNGIG-----YVDKITKVEISPDDP-------------STVITISG----LTRRGLVYA-GTVVVASGIG-----EF 19 O48704 96.1% 26.4% FENCKNAPIDYNYGITNVTRVEISPYPVG---------PYDEPTITISGF--TSDDSYIIYR-ATIHVLYKYE-----NV 20 numgr912 90.6% 11.9% FIDCGGN------NHFQIGNVTVLTKEIE----------NKEYLILFTIN--GILKETIYDG--NIFTIITNG-----PV 21 genef00747 88.2% 14.6% KSNQI--------NFHKIEKLEFSPEQP-----------IAGKDLIVSVS--GYLNKEITKG--EAYLAITFD-----RI 22 SAP3_HUMAN 91.3% 12.0% WDNCDEGK-----DPAVIRSLTLEPDPI-----------VVPGNVTLSVV--GSTSVPLSSP-LKVDLVLEKEVAG-LWI 23 BG354807Ts 92.9% 9.8% AYDCGNEN-----RIIRLYSFRLGPMPL-----------VFPDVLQMHID--LEIMDKIPSQ-VDAHVRVEKQVTKTIWV 24 NPC2_BOVIN/24-1 88.2% 11.4% FKDCG-------SWVGVIKEVNVSPCPTQP------CKLHRGQSYSVNVT--FTSNTQSQSS--KAVVHGIVMG---IPV 25 NPC2_HUMAN/24-1 88.2% 11.4% FKDCG-------SVDGVIKEVNVSPCPTQP------CQLSKGQSYSVNVT--FTSNIQSKSS--KAVVHGILMG---VPV 26 NPC2_BRARE/24-1 88.2% 12.1% FVDCG-------SVDGKVVQVDIKPCSQQP------CKLHKGQSYTVNVT--FSSGVESQTS--KAVVHGVLAG---VPV 27 NPC2_DROME/21-1 86.6% 11.7% FSDCG-------SKTGKFTRVAIEGCDTTKAE----CILKRNTTVSFSID--FALAEEATAV--KTVVHGKVLG---IEM 28 ES16_MANSE/19-1 85.8% 13.8% YTDCG-------SKLATVQSVGVSGWPENARE----CVLKRNSNVTISID--FSPTTDVSAI--TTEVHGVIMS---LPV 29 Q9NFQ4/5-125 85.8% 12.2% FKDCG---------KGEVTELDITDCSGDF------CVIHRGKPLTLEAK--FAANQDTTKA--TIKVLAKVAG---TPI 30 ALL1_LEPDS/21-1 85.8% 11.5% FKDCG---------HGEVTELDITGCSGDT------CVIHRGEKMTLEAK--FAANQDTAKV--TIKVLAKVAG---TTI 31 Q9U5P7/5-127 85.8% 14.2% FTDCG---------HNEIKELSVSNCTGNY------CVIHRGKPLTLDAK--FDANQDTASV--GLVLTAIIDG--DIAI 32 AAK61827/22-142 85.8% 10.1% FQDCG---------KGEVESLEVEGCSGDY------CVIHKGKKLDLAIS--VTSNQDSANL--KLDIVADING---VQI 33 ALL2_TYRPU/20-1 85.8% 15.1% FTDCG---------KKEIASVAVDGCEGDL------CVIHKSKPVHVIAE--FTANQDTCKI--EVKVTGQLNG---LEV 34 ALL2_DERPT/22-1 85.8% 7.1% VKDCA---------NHEIKKVLVPGCHGSE-----PCIIHRGKPFQLEAV--FEANQNTKTA--KIEIKASIDG---LEV 35 Q9VFN7/23-158 89.0% 8.0% VSQCPK----SKSKALAAGDVSISNCPKSK------CILKRNTEASIQMK--IRPERDFQEL--TSDIQGIILD---VPL 36 Q9VH31/26-159 90.6% 11.6% IRQCA------DSNYPQPLMVQIDDCDALP------CDLWKGTEAKIDIQF-VATRNTMKKL--SAEVHLTSLG---VTI 37 Q9VH32/29-158 88.2% 9.0% VKKCS-------GSKPFPLEVRVHNCVTPP------CQIVKGTTQKFEID--FAVDKYITQL--TTLVKATTLG--IITV 38 O17271/54-185 88.2% 12.9% YKVCK--------SDGTVSQVKADGCELTVKDGKKVCLFKKGSRPIIQIA--FKPSKDTDKL--KTSVRAKVGG--SAMV 39 Q9U5E1/25-154 89.0% 9.0% TRLCRE----VDASACTVNEVRIDPCVNSR-----LCHLKKGKNAKVSFD--FTPQFSTTKL--KTGLFGLKNG---AEI 40 Q9VA41/26-156 87.4% 13.6% FQTCE-----DSVDSCSISQVRVTPCPEANAN--AACHIRRRHRFTMSFD--FTPHFDADTL--VASLGWAKSE--NVEL 41 Q9VCC8/46-169 88.2% 15.1% FEDCG--------SLYQVSYLDIESCTTLP------CSMARNATIKVTVR-FDDNGNGVSFL--KHEVRWVFNY---IKT 42 AAK57984 88.2% 10.4% YSYCD--------SMKFPFSITAEPCIT-----------LKGTNGFLHIK--FIPRRDLKKL--YFNLSINVNS---IEV 43 AAL16721 88.2% 13.3% YNYCD--------DMKFPISVKVEPCVT-----------IKGTKGKLHLY--YIARRDIQKL--YLNLHISIKS---MTL 44 Q9JHF9 88.2% 9.6% YSYCD--------HLKFPISISSEPCIR-----------LRGTNGFVHVE--FIPRGNLKYL--YFNLFISVNS---IEL 45 Q90890 86.6% 11.1% YKSCD---------PQQDFAFSIDRCSD-----------VTTHTFDIRAA--MVLRQSIKEL--YAKVDLIING---KTV 46 O88188 86.6% 11.9% YQSCD---------PLQDFGLSIDQCSK-----------QIQSNLNIRFG--IILRQDIRKL--FLDITLMAKG---SSI 47 O95711 86.6% 12.6% YQSCD---------PLQDFGFSVEKCSK-----------QLKSNINIRFG--IILREDIKEL--FLDLALMSQG---SSV consensus/100% ....................h.........................h.h..................h...........h consensus/90% h..C................l.l.s................tt.h.hth...h..t.th......h.l.h.........h consensus/80% hp.Cs..........h.h.tlplpsss.............hsp.hphpht..h..tpphtth..hh.lth.h.......l consensus/70% hp.Cs..........hplpplplsssss...........hpupshplpht..htsppphpph..hh.lphtht......l cov pid 81 . 1 . . . . : . 160 1 Q9FF96 100.0% 100.0% TGLL---------KTYDLCDVSA---------------------CNPEYVIEAGTDFELTLS-----DVLYVGFDEEI-- 2 Q9FF97 99.2% 72.7% TGLL---------KTYDLCDVSL--------------------ACNIDSEIEAGDVFDFSLK-----DVLYVGFDEGI-- 3 gi|4322563|gb|A 91.3% 21.1% TLVR---------QTADLCEQLV----------------NVELKCP----LGPGDMTLTKQV------DLPKQIPPG--- 4 BE759157An 90.6% 19.7% TLVR---------QTADLCEQIV----------------NVDLECP----LEKGEMTLTKQV------ELPRQIPPG--- 5 AI330141Nc 85.0% 19.5% RLIN---------TSADLCKEMK----------------NVELECP----IKKGRLSITKNV------ELPKEIPPG--- 6 gi|2132419|pir| 92.1% 20.0% RLLS---------QTFDLCETLED-------------NDIEGLSCP----IEPGEYNIKKIV------EIPGEVPPG--- 7 BI452083Gi 91.3% 20.5% KLLQ---------KRFDLCEESQ----------------KVNKPCP----LEQGDQQLSTTI------DLPKEIPPG--- 8 gi|18399355|ref 90.6% 16.4% HIHS---------ETHDLCDETS---------------------CP----VAIGDFLVAHSQ------VLPGYTPPG--- 9 gi|10178104|dbj 90.6% 16.4% HVHS---------ETHDLCTETS---------------------CP----IQTGDFLVAHSQ------VLPGYTPPG--- 10 gi|7635455|emb| 89.8% 23.4% PVHT---------ETHDLCDETA---------------------CP----VAPGSFVLSHSQ------TLPSITPPG--- 11 genef02100 89.8% 16.0% TLIN---------EKKDICTLPG-----------------SPYKCP----IKEGEYSHTINF------TIPEAAPNG--- 12 gener09004 78.7% 20.5% TIIR---------ETKPICSSDN------------------PFPCP----IQPGDYTHSVDI------AIPDNAPRG--- 13 gi|13810234|emb 92.1% 16.3% RIVN---------ERLDICDKAYE---------------LAAVECP----VEPGIITKQATI------SLPWAIPPG--- 14 Q9AST8 89.8% 21.8% PVST---------KSYSLCDITA---------------------CP----VAPGPIVLT----------LPNIFTPREKR 15 BJ206944Pp 90.6% 17.2% TVHT---------ERSDICSKAR---------------------CP----IPPGEFVLENTE------ILPGFTPPG--- 16 BE238152Cr 90.6% 16.5% PIYS---------STSDLCTKTT---------------------CP----VPAGPIAITIVQ------VLPPIAPPG--- 17 numgf1161 91.3% 17.6% NLPT---------FKNDVCKLLS---------------------CP----VQPGPLVFNTTI------NVPFITPPG--- 18 Q9MAK7 89.0% 25.8% NIPF---------KYYDFCQLCK---------------------CP----MLSGTNFVFTLS----QILIPKAFASD--- 19 O48704 96.1% 26.4% NSTI---------INYDLSDVMG------------------EDPCS----IEPGEKFVLTLS------KVPGLQSLPHK- 20 numgr912 90.6% 11.9% TLIK---------EKKSFCKSDH------------------VFSCP----SGSGEINYTFNL------TMPITTTTTLK- 21 genef00747 88.2% 14.6% PILK---------LKGNLCNGMG-------------------VTCP----TPQGNYSTTTINQ-----EIPENVPQG--- 22 SAP3_HUMAN 91.3% 12.0% KIPCTDYIGSC--TFEHFCDVLDMLIPTGEPCPEPLRTYGLPCHCP----FKEGTYSLPKSEFVVPDLELPSWLTTG--- 23 BG354807Ts 92.9% 9.8% RVPCMLQFGSCDYYRIDACLLTEEMFG-----------------CP----IEIGRHNHTETYLLDSPETFNPNSLRG--- 24 NPC2_BOVIN/24-1 88.2% 11.4% PFPI---------PESDGCKSG--------------------IRCP----IEKDKTYNYVNKL-----PVKNEYPSI--- 25 NPC2_HUMAN/24-1 88.2% 11.4% PFPI---------PEPDGCKSG--------------------INCP----IQKDKTYSYLNKL-----PVKSEYPSI--- 26 NPC2_BRARE/24-1 88.2% 12.1% PFPI---------PIDDGCKSG--------------------IQCP----IVPQKPYNYVTEL-----PVKTEYPAI--- 27 NPC2_DROME/21-1 86.6% 11.7% PFPL---------ANPDACV-------------------DSGLKCP----LEKDESYRYTATL-----PVLRSYPKV--- 28 ES16_MANSE/19-1 85.8% 13.8% PFPC---------RSPDACK-------------------DNGLTCP----IKAGVVANYKTTL-----PVLKSYPKV--- 29 Q9NFQ4/5-125 85.8% 12.2% QVPG---------LETDGCKF---------------------VKCP----IKKGDPIDFKYTT-----TVPAILPKV--- 30 ALL1_LEPDS/21-1 85.8% 11.5% QVPG---------LETDGCKF---------------------IKCP----VKKGEALDFIYSG-----TIPAITPKV--- 31 Q9U5P7/5-127 85.8% 14.2% DIPG---------LETNACKL---------------------MKCP----IRKGEHQELIYNIG----EIPDATPEI--- 32 AAK61827/22-142 85.8% 10.1% EVPG---------VDHDGCHY---------------------VKCP----IKKGQHFDVKYTY-----SIPAILPTT--- 33 ALL2_TYRPU/20-1 85.8% 15.1% PIPG---------IETDGCKV---------------------LKCP----LKKGTKYTMNYSV-----NVPSVVPNI--- 34 ALL2_DERPT/22-1 85.8% 7.1% DVPG---------IDPNACHY---------------------MKCP----LVKGQQYDIKYTW-----NVPKIAPKS--- 35 Q9VFN7/23-158 89.0% 8.0% PFPGY--------YGTSACPHIYDEA------------GEKKVGCP----LKAGQVYTYKNSF-----KILPVYPTV--- 36 Q9VH31/26-159 90.6% 11.6% PYDLE-------ASRGNVCSNLLHG-----------------AYCP----LDAGEDVTYQLLL-----PVTTNQPEV--- 37 Q9VH32/29-158 88.2% 9.0% PYELP-------ADVAAVCPNLQYG-----------------AYCP----LYPTEDVSYLFTF------PIGEYPEI--- 38 O17271/54-185 88.2% 12.9% DFPQ---------TNSDACTYG--------------------VKCP----VSAGENQIFEQSI-----SITENHPAG--- 39 Q9U5E1/25-154 89.0% 9.0% PFDAL--------YNADACTL---------------------TSCP----TEAGKTQTLDFSS-----HIGKKLPTG--- 40 Q9VA41/26-156 87.4% 13.6% PLLT---------MDQEACKY---------------------TTCP----VRSGVTQTYTNNM-----PADARFPLS--- 41 Q9VCC8/46-169 88.2% 15.1% QAAI----------TPDPCDGD--------------------HGCI---ESASGGKAYWANI------FVNETLPVM--- 42 AAK57984 88.2% 10.4% PTRK-----------EIICHGYDD----------------NYSFCK----ALKGETVNTVVPF----SFKGILFPKG--- 43 AAL16721 88.2% 13.3% PMRK-----------EVICREYGG----------------DYSFCG----ALKGETVNTTIPF----SFQGIRFSPG--- 44 Q9JHF9 88.2% 9.6% PKRK-----------EVLCHGHDD----------------DYSFCR----ALKGETVNTSIPF----SFEGILFPKG--- 45 Q90890 86.6% 11.1% LSYS-----------ETLCGPGLS----------------KLIFCG----KKKGEHLYYEGPI----TLGIKEIPQR--- 46 O88188 86.6% 11.9% LNYS-----------YPLCEEDQP----------------KFSFCG----RRKGEQIYYAGPV----NNPGLDVPQG--- 47 O95711 86.6% 12.6% LNFS-----------YPICEAALP----------------KFSFCG----RRKGEQIYYAGPV----NNPEFTIPQG--- consensus/100% ..................s.........................C........t.......................... consensus/90% .h..............shCt........................Cs....h..s...................hs..... consensus/80% .h..............shCp........................Cs....h..Gp...h..........h...hP.h... consensus/70% .h.t..........p.shCp........................CP....lttGphh.ht.........lst.hP.s... cov pid 161 . . . ] 195 1 Q9FF96 100.0% 100.0% ---KYSVSLREKTSE---EKNPIIKMCVDFKV--- 2 Q9FF97 99.2% 72.7% ---KYSVSLRQKTAE---EEDPIIKMCIDFKV--- 3 gi|4322563|gb|A 91.3% 21.1% ---KYTVQADVFNS------DGEHITCLKALN--- 4 BE759157An 90.6% 19.7% ---KYTVHADVYTK------DDKHVTCLXGA---- 5 AI330141Nc 85.0% 19.5% ---KYTVEADVYNS------DDKHITCLTATV--- 6 gi|2132419|pir| 92.1% 20.0% ---KYVVVARAYTE------KDDLITCLTGEV--- 7 BI452083Gi 91.3% 20.5% ---KYIXDALVYTP------DNRRIACLKAXA--- 8 gi|18399355|ref 90.6% 16.4% ---SYSLKMKMLDG------RKKELTCIKFSF--- 9 gi|10178104|dbj 90.6% 16.4% ---SYLLKMKMLDA------KKKELTCIKFSF--- 10 gi|7635455|emb| 89.8% 23.4% ---TYTLKMTINDK------NGGRLTCISFKF--- 11 genef02100 89.8% 16.0% ---KYTGHVSVTDQ------ESSEIACIDVTL--- 12 gener09004 78.7% 20.5% ---KYSGNFLV------------------------ 13 gi|13810234|emb 92.1% 16.3% ---RYHVLATAYNA------DGEQLTCVSASV--- 14 Q9AST8 89.8% 21.8% TAIGYTIIISITDK-----PLKESMMCILFVV--- 15 BJ206944Pp 90.6% 17.2% ---SYKIKLQFVDE------SDKQLACADINF--- 16 BE238152Cr 90.6% 16.5% ---DYGLQVVARGP------DGSELACVNVAF--- 17 numgf1161 91.3% 17.6% ---QYQGTLQLTDQ------NNKNISCLTFAT--- 18 Q9MAK7 89.0% 25.8% ---KLAVTLSLISR------DQTEGVCVYFDF--- 19 O48704 96.1% 26.4% --DKSKIVISLVDEYGDDAEVPLLKMCVEFDN--- 20 numgr912 90.6% 11.9% -HQTLYSTVWFTDQ------VPNQIACFNINF--- 21 genef00747 88.2% 14.6% ---YYYVNFVLYDQ------DDLQITCVDVQM--- 22 SAP3_HUMAN 91.3% 12.0% ---NYRIESVLSSS-------GKRLGCIKIAASLK 23 BG354807Ts 92.9% 9.8% ---NYRTLVEINNS-----DTGEPLACFNFIYSIN 24 NPC2_BOVIN/24-1 88.2% 11.4% ---KVVVEWELTDD------KNQRFFCWQIPIEVE 25 NPC2_HUMAN/24-1 88.2% 11.4% ---KLVVEWQLQDD------KNQSLFCWEIPVQIV 26 NPC2_BRARE/24-1 88.2% 12.1% ---KVVVEWELRDD------SSKDLFCIKFPVQIV 27 NPC2_DROME/21-1 86.6% 11.7% ---SVLVKWELQDQ------DGADIICVEIPAKIQ 28 ES16_MANSE/19-1 85.8% 13.8% ---SVDVKWELKK-------DEEDLVCILIPARIH 29 Q9NFQ4/5-125 85.8% 12.2% ---KAEVTAELVG-------DHGVLACGRFGRQVE 30 ALL1_LEPDS/21-1 85.8% 11.5% ---KADVTAELIG-------DHGVMACGTVHGQVE 31 Q9U5P7/5-127 85.8% 14.2% ---KAKVKAQLIG-------EHGVLACGWVDGEVQ 32 AAK61827/22-142 85.8% 10.1% ---KAKIIAKIIG-------DKGLGGCIVINGEIQ 33 ALL2_TYRPU/20-1 85.8% 15.1% ---KTVVKLLATG-------EHGVLACGAVNTDVK 34 ALL2_DERPT/22-1 85.8% 7.1% --ENVVVTVKVMG-------DDGVLACAIATHAKI 35 Q9VFN7/23-158 89.0% 8.0% ---SLEIHWGLGD-------KHGDAACFQIPAKIK 36 Q9VH31/26-159 90.6% 11.6% ---PTRLEVRLLDS----DDENRVVSCFLADTRVK 37 Q9VH32/29-158 88.2% 9.0% ---GVKIEIYLVDQ------DNEIATCFVCDIKVV 38 O17271/54-185 88.2% 12.9% --EVIQVNWQLTRP------DSGKEVCIIFLAEIK 39 Q9U5E1/25-154 89.0% 9.0% ---NFEFKWKLWNE-----DNESQMCCYRTNVRLV 40 Q9VA41/26-156 87.4% 13.6% ---PYTIRWALKDP------VSQKRCCFTIDIKVV 41 Q9VCC8/46-169 88.2% 15.1% ---KGSMLWESKDA------NDQNLICFQVPVVIT 42 AAK57984 88.2% 10.4% ---QYRCVAEAIVG-----DNEEKLFCLNFTI--- 43 AAL16721 88.2% 13.3% ---QYHCVVEAISG-----NSEEMLFCLNFTI--- 44 Q9JHF9 88.2% 9.6% ---HYRCVAEAIAG-----DTEEKLFCLNFTI--- 45 Q90890 86.6% 11.1% ---DYTITARLTNE------DRATVACADFTV--- 46 O88188 86.6% 11.9% ---EYQLLLELYNE------NRATVACANATV--- 47 O95711 86.6% 12.6% ---EYQVLLELYTE------KRSTVACANATI--- consensus/100% ................................... consensus/90% ...th.h.h.h.s...........hhCh.h.h... consensus/80% ...ph.h.hthhs.......ptt.hhCh.h.h... consensus/70% ...phplphplhst......spt.lsChphsh...