cov pid 1 [ . . . . : . . . 80 1 Q9K7R1/35-156 100.0% 100.0% LANGEYTIDFKVLKDG----TNETSVMNGYTAKPATVFINGNDTYVEVTLTQ------SDWIKVFQTRQNGT-------- 2 Q9K7R0/35-156 100.0% 39.3% LADGTYTIQYTVLHAD----NDSASMANDYWEKPARLTVNGGNMTMQMTINH------SSWVTEFKVPSNGG-------- 3 Q9K7R1/380-501 100.0% 71.3% LAVGEYTIDFMVLKDG----TNDTSVMDGYTEKPAHLTVEEAGAYVDLTLTN------SDWIKLFQTKQNGT-------- 4 Q9K7R1/709-830 100.0% 59.0% LPNGTYTIDFTVLKHN----TNEVSVMDNYTEKPATLVVQDGQQTIDLTLTN------SDWIKLFQTKQNGE-------- 5 Q929I6/361-485 100.0% 48.8% LNNHTYSIDFDVFKDG----TNETSMMESYVMKPAIIKVENNQPYVYLTLTN------SSWIKTFQYKQNGV-------- 6 Q9K7R1/872-994 100.0% 56.9% LKDGEYTIDFTVLKNN----TNEVSVMDDYTVKPAILSVENQETYVTVTLKN------SEWIKVFQTEQDGT-------- 7 Q929I5/29-148 96.7% 32.3% LKDGTYSVDYTVLQGD----SDSVSMANDYFDKPATVTVNGGKSTVSLQVNH------SKWITGLWVEGN---------- 8 16411656/29-14 96.7% 31.5% LKDGTYSVDYTVIQGD----SDSASMANDYFDKPATVTVNGGKSTVSLQVNH------SKWITGLWVEGN---------- 9 Q929I6/184-307 100.0% 32.3% LADGIYTIPFVAKKAN----DDSNSSMQNYFDNPAWLKVKNGKKTVAMTVND------NKTVTALKTQISGA-------- 10 Q929I6/34-173 100.0% 25.0% KDGGEYQVQVNFYKDNTGKTTKESSEADKYIDHTATIKVENGQPYMYLTITN------SNYWQTMAVSKDGTRPAKPAQA 11 Q9K7R1/231-354 100.0% 33.9% LEDGTYTIDFRALRAD----NDNLSSMDGYLGKPALLEVEGGKTFVSLTINERE----GQFLTDVRLDTNGE-------- 12 18143877/429-5 95.9% 13.4% LKNGIYNIKNDVSYIGDGNQNVGNDMARKALSKNSKLEVKDDKKILTLKFNEEQ----FSFFKDFRITVNGK-------- 13 Q99UX3/27-150 96.7% 25.0% NAADSGTLNYEVYKYN----TNDTSIANDYFNKPAKYIKKNGKLYVQITVNH------SHWITGMSIEGH---------- 14 18143877/248-3 95.9% 14.9% LGDGSYTLKNTVQYVGQGNMETGNSMARKVLSDDSRIDISNGKNTVTLTFNSEL----YAFLKNFNVTVDGE-------- 15 Q9KW67/62-184 100.0% 28.5% SQATSQPINFQVQKDG----SSEKSHMDDYMQHPGKVIKQNNKYYFQAVLNN------ASFWKEYKFYNANN-------- 16 18143878/33-16 100.0% 19.5% LENGIYDVKNDVYHDS----DIGMSMSRSYLNDTMQLKILGDETEYTIGFSG------TEYMENFRILVDGN-------- 17 18143877/589-7 98.4% 18.0% TKGKLYTIENKVVHKS----QTGVDMARKYLNKISDLEEIDGKTYLTLTFTG------QEFMKDHKITVNGK-------- 18 Q99UX5/341-458 96.7% 22.1% KMTDLQDTKYVVYESV----ENNESMMDTFVKHPIKTGMLNGKKYMVMETTN------DDYWKDFMVEGQ---------- 19 Q99TD3/345-471 100.0% 18.9% TADNWRPIDFQMKNDK----GERQFYHYASTVEPATVIFTKTGPVIELGLKT------ASTWKKFEVYEGDK-------- 20 Q99UX5/144-269 99.2% 15.7% SAPNSRPIDFEMKKEN----GEQQFYHYASSVKPARVIFTDSKPEIELGLQS------GQFWRKFEVYEGDK-------- 21 Q99YA0/369-501 100.0% 16.5% LTEGTYTLNFKANKEN----SEESSMLQGAFDKRAKLVVKADGTMEISMLNTAL----GQFLIDFSIESKGTY------- 22 Q99YA0/976-112 98.4% 14.2% LRDGIYYLNASMLKTD----LASESMSNKAINHRVTLVVKKGVPYLEVEFRGIKVGKMLGYLGELSYFVDGYQ---RDLA 23 Q99TD3/105-232 100.0% 18.0% DIGPREQVNFQLLDKN----NETQYYHFFSIKDPADVYYTKKKAEVELDINT------ASTWKKFEVYENNQ-------- 24 Q99TD3/543-660 96.7% 21.3% QLTDLQEAHFVVFESE----ENSESVMDGFVEHPFYTATLNGQKYVVMKTKD------DSYWKDLIVEGK---------- 25 18143877/45-17 95.9% 9.8% LRDGIYEANNVTSYVEEGN-STGENMARNAVGEKTKFRIEDGKTLMTVYFNSSL----YGFMNNIEVSAGGE-------- 26 Q9X358/1-82 66.4% 33.3% --------------------------MNSYVKSPATLTVKNNKKYISFKVNS------SSYIKGLQIKKGNK-------- consensus/100% ................................p...h...tt.......hpt.......thh..h.h..t.......... consensus/90% ..st...hp..h...t....t.t...h.t.h.c...h.h.tst..h.h.hpt.......thhp.h.h..t.......... consensus/80% .tss.hplp..h.pts....ppt.shhpthhtcsuplhhpssp.hhththsp......spahpthph..ss......... consensus/70% htss.hslphpshcts....ssptShhpshhp+suplhhpssp.hlplphss......spahpthphptsst........ cov pid 81 . 1 . . . . : . 160 1 Q9K7R1/35-156 100.0% 100.0% ------FVDAEVVSEDPE------------ANTRIVRFPVEDLATKLDAYTHVVIPM------INYDNWYTVQFQFDENS 2 Q9K7R0/35-156 100.0% 39.3% ------FRDVTVVSTDEA------------ADKRVVEFPISDLSTPLESKIHVTVED------IDYDHDYTIRLSFDTSS 3 Q9K7R1/380-501 100.0% 71.3% ------FVDAEVVSEDAE------------ANKRVVRFPIDNVHEQLDAYTHVVIPM------INYDNYYTVQLSFDVNS 4 Q9K7R1/709-830 100.0% 59.0% ------YVDAEVVSADTA------------ANKRVVRFDVQDLSAKQSAYTHVVIPE------LQYDNFYEVHIRFDTNS 5 Q929I6/361-485 100.0% 48.8% ------WKDMEVVSGDIN------------KNTRTVKYPVKDGTANTDVKTHVLIENMP---GFSYDHEYTVQVKLDPAS 6 Q9K7R1/872-994 100.0% 56.9% ------YVDAEIVSVNAV------------EDTRDVRFYVEDLEELVHAYTEVYFEE-----PILYDGKYFVQFDFDVHS 7 Q929I5/29-148 96.7% 32.3% --------AVSVTSKNTA------------SDTRKVSFPVSTLSSPVNAKIKVDIDDD----GLNYHHEYQIQLRFDEGA 8 16411656/29-14 96.7% 31.5% --------AVSVTSKNAS------------SDTRKVSFPVSTLSNPVNAKIKVDIDDD----DLNYHHEYQIKLRFDEGS 9 Q929I6/184-307 100.0% 32.3% ------LQDVKVVSEDKD------------ANTRIVEFEVEDLNQPLAAHVNYEAPFN----GSVYKGQADFRYVFDTTK 10 Q929I6/34-173 100.0% 25.0% EVYQDSYQDVQTVSTDAA------------NNTRVEKFKLSSLDDIIYSYMHIKVDA------ISYDHWYQVDLTIDPST 11 Q9K7R1/231-354 100.0% 33.9% ------WTSGTVVSEDPE------------NLSRVVKYEVANIAAVIDAEVDMYVPR------ANYRNKQKFRLALDMDS 12 18143877/429-5 95.9% 13.4% ------DV---VATPNEA------------D--RTISFEIPSLDADIVVTAFVSVMGRDVSFKTILNKGTLELVSGEDKP 13 Q99UX3/27-150 96.7% 25.0% --------KENIISKNTA------------KDERTSEFEVSKLNGKIDGKIDVYIDEKVNGKPFKYDHHYNITYKFNGPT 14 18143877/248-3 95.9% 14.9% ------KV---EAEVNKD------------N--RTIKFNIPDLNSDIVVSTLVSMMGKEVSFKTTLNYDTAKKLEDNLED 15 Q9KW67/62-184 100.0% 28.5% -----QELATTVVNDDKK------------ADTRTINVAVEPGYKSLTTKVHIVVPQ------INYNHRYTTHLEFEKAI 16 18143878/33-16 100.0% 19.5% ------DGNAEIVEEDKE------------NGTIKLKVKVPNKDSELEAKIYVGPMERDVQFKVIPKFDTLTLVEKLEAP 17 18143877/589-7 98.4% 18.0% ------DANYKVVSKNGD------------S--IKLRFEIPNLDADIKVSLYVIPMGRNVEFNVELLKDTKKFVKDFTVS 18 Q99UX5/341-458 96.7% 22.1% --------RVRTISKDAK------------NNTRTIIFPYVEGKTLYDAIVKVHVKT------IDYDGQYHVRIVDKEAF 19 Q99TD3/345-471 100.0% 18.9% ------KLPVELVSYDSD------------KDYAYIRFPVSNGTRDVKNVSSIEYGENIHE-DYDYTLMVFAQPITNNPD 20 Q99UX5/144-269 99.2% 15.7% ------KLPIKLVSYDTV------------KDYAYIRFSVSNGTKAVKIVSSTHF-NNKEE-KYDYTLMEFAQPIYNSAD 21 Q99YA0/369-501 100.0% 16.5% ----PAAVRKQVGQKDIN------------GSYIRSEFTMPIDDLDKLHKGAVLVSAMGGQESDLNHYDKYTKLDMTFSK 22 Q99YA0/976-112 98.4% 14.2% GKPVGRTKKAEVVSYFTDVTGLPLADRYGKNYPKVLRMKL-IEQAKKDGLVPLQVFVPIMD---AISKGSGLQTVFMRLD 23 Q99TD3/105-232 100.0% 18.0% ------KLPVRLVSYSPVP-----------EDHAYIRFPVSDGTQELKIVSSTQIDDGEET-NYDYTKLVFAKPIYNDPS 24 Q99TD3/543-660 96.7% 21.3% --------RVTTVSKDPK------------NNSRTLIFPYIPDKAVYNAIVKVVVAN------IGYEGQYHVRIINQDIN 25 18143877/45-17 95.9% 9.8% ------AL---KIEENKD------------D--KSITFEVPSPDTKVKIGLFITMMGRKVELFLVNDMNTVNLLDEAPTI 26 Q9X358/1-82 66.4% 33.3% ------FVETAVLEKNIQ------------ENSRIGEFEVDNLLNILDSKVHVKI-------PVIYD------------- consensus/100% ............hp................t..h...h.h............h........................... consensus/90% ...........hhp.s..............t..hh.ph.h...tt.h.....h.h...........p............. consensus/80% .........hplls.s.t............t..thlpF.l.shpt.hpshh.l.h.t......h.hph.h.hph..p... consensus/70% .......hthpllStstt............ss.+hlcF.l.shst.lpshhpl.h.t......htYpt.hhhph.hp.ss cov pid 161 ] 164 1 Q9K7R1/35-156 100.0% 100.0% LTPV 2 Q9K7R0/35-156 100.0% 39.3% IQEV 3 Q9K7R1/380-501 100.0% 71.3% LKPA 4 Q9K7R1/709-830 100.0% 59.0% IRDE 5 Q929I6/361-485 100.0% 48.8% IKDI 6 Q9K7R1/872-994 100.0% 56.9% ITPL 7 Q929I5/29-148 96.7% 32.3% VKSS 8 16411656/29-14 96.7% 31.5% AKAL 9 Q929I6/184-307 100.0% 32.3% AQAA 10 Q929I6/34-173 100.0% 25.0% FKVI 11 Q9K7R1/231-354 100.0% 33.9% ITEV 12 18143877/429-5 95.9% 13.4% AIEE 13 Q99UX3/27-150 96.7% 25.0% DVAG 14 18143877/248-3 95.9% 14.9% NNKP 15 Q9KW67/62-184 100.0% 28.5% PTLA 16 18143878/33-16 100.0% 19.5% KVEN 17 18143877/589-7 98.4% 18.0% SLPQ 18 Q99UX5/341-458 96.7% 22.1% TKAN 19 Q99TD3/345-471 100.0% 18.9% DYVD 20 Q99UX5/144-269 99.2% 15.7% KFKT 21 Q99YA0/369-501 100.0% 16.5% TVTK 22 Q99YA0/976-112 98.4% 14.2% WASL 23 Q99TD3/105-232 100.0% 18.0% LVKS 24 Q99TD3/543-660 96.7% 21.3% TKDD 25 18143877/45-17 95.9% 9.8% NNAK 26 Q9X358/1-82 66.4% 33.3% ---- consensus/100% .... consensus/90% .... consensus/80% .h.. consensus/70% hh..