cov    pid  1 [        .         .         .         .         :         .         .         . 80 
 1 NEU1_ANSAN/1-7 100.0% 100.0%    RKCLPCGPRNRGRCFGPRICCGEELG------CYLGTPETLRCQEESFLPTPCE-SGRKPCGG-DGASCAAPGICCSSEG    
 2 Q91504/1-79    100.0%  63.3%    RQCLPCGPRNRGQCFGTSICCGEEIG------CYFGTSETLRCQKEVYLPSPCE-PTGRLCGR-NGGKCATSGTCCTAES    
 3 NEU2_ANSAN/1-7  98.7%  65.0%    RQCLPCGPGNRGRCFGPGICCGVELGG-----CYVGTAETRRCAEEDYLPSPCQ-PGGQPCG--SGGRCAADGVCCSADT    
 4 NEUV_CHICK/1-7  98.7%  64.6%    RQCLPCGPGNRGRCFGPGICCGAELG------CYLGTAETRRCAEEDYMPSPCQ-AGGQPCGS-D-GRCAANGVCCSADT    
 5 NEU2_CAVPO/1-7  98.7%  63.3%    RQCLPCGPGGQGRCFGPSICCADALG------CFVGTAEALRCQEENYLPSPCQ-SGQKPCG--SGGRCAANGVCCNDES    
 6 Q91078/1-78     98.7%  59.5%    RQCLPCGPGGQGRCFGPRICCGEAMG------CRLGGPDVAICRAERLMPSPCE-SRGEPCG--HGGKCGAPGLCCSSES    
 7 NEU1_ONCKE/1-7  98.7%  60.8%    RQCMSCGPGDRGRCFGPNICCGEGMG------CYMGSPEAAGCVEENYLPSPCE-AGGRVCG--SEGSCAASGVCCDSES    
 8 Q91167/1-79    100.0%  60.8%    RKCMSCGPGEQGRCFGPSICCGKDVG------CWMGSPETAHCMEENYLPTPCQ-VGGRPCGS-DTVRCASPGVCCDSEG    
 9 NEU4_CATCO/1-7 100.0%  59.5%    RQCLACGPGDKGRCLGPSICCGEEIG------CLVGSPWMARCQEEEYLPSPCQ-TAGKLCGS-DAGPCAAPGVCCGTEG    
10 CONO_LYMST/1-8 100.0%  46.2%    RECMKCGPGGTGQCVGPSICCGQDFG------CHVGTAEAAVCQQENDSSTPCL-VKGEACGSRDAGNCVADGICCDSES    
11 Q90494/1-83     96.2%  41.9%    RSCAACGLG--GQCVGPSICCGGLLGGGHGGSCIVGGPLSAPCKRENLHPEPCRPGGGSSCG--LEGICAAPGICCTDVT    
   consensus/100%                  RpCh.CG.t..GpChGstICCu..hG......ChhGss..h.C.tE...spPC..sttp.CG....s.CsssGhCCss.s    
   consensus/90%                   RpChsCGPttpGpChGPtICCGtthG......ChhGss.shhC.pEphhPoPCp.sttp.CG..ptu.CuusGlCCss-s    
   consensus/80%                   RpChsCGPGspGpChGPsICCGtthG......ChhGos-shhCtcEshhPoPCp.ssGpsCG..stGpCAAsGlCCss-s    
   consensus/70%                   RpChsCGPGspGRCFGPuICCGptlG......CalGosEsttCtcEsahPoPCp.suGcsCG..ssGpCAAsGlCCsuEo    

                     cov    pid 81       ] 87 
 1 NEU1_ANSAN/1-7 100.0% 100.0%    CVADPAC    
 2 Q91504/1-79    100.0%  63.3%    CTVDPTC    
 3 NEU2_ANSAN/1-7  98.7%  65.0%    CAADASC    
 4 NEUV_CHICK/1-7  98.7%  64.6%    CAMDAVC    
 5 NEU2_CAVPO/1-7  98.7%  63.3%    CVIEPEC    
 6 Q91078/1-78     98.7%  59.5%    CAEDASC    
 7 NEU1_ONCKE/1-7  98.7%  60.8%    CVLDPDC    
 8 Q91167/1-79    100.0%  60.8%    CSADQSC    
 9 NEU4_CATCO/1-7 100.0%  59.5%    CKLDPNC    
10 CONO_LYMST/1-8 100.0%  46.2%    CAVNDRC    
11 Q90494/1-83     96.2%  41.9%    CSIDSTC    
   consensus/100%                  C..p..C    
   consensus/90%                   Csh-stC    
   consensus/80%                   CshDssC    
   consensus/70%                   CshDssC