cov pid 1 [ . . . . : . . . 80 1 O45282/60-185 100.0% 100.0% SAECLIEQKCTKEELKTIED-------------------NFYAVEQYDAWGKIPLTGLFQLPILFDGSYQECERISGK-- 2 O45283/50-178 99.2% 59.2% SVDCLISRKCNKKEIQIIKD-------------------NFYAIEQLDAFGKLPSSGIFEVPLIFDGSYQECQRISGK-- 3 Q19239/56-183 99.2% 46.5% SEACLKKQTCSLKELKILKA-------------------NLYAIQELDSFGKLPVPGMLEVATLYDGSYQECKRVSGV-- 4 O45470/60-192 99.2% 53.7% SLECILSKKCSKKEELLLRD-------------------NFYALEQLDSFGKFPSIGLFEVPLIFDGSYQECERISGK-- 5 Q9UAQ8/39-163 96.8% 48.1% SVECLTLNNCTTQESKILDE-------------------NLYAVKQLDAFGEFPTPGLLELRTLYDGSYQECDRIDGE-- 6 Q9VWG6/76-210 95.2% 23.4% DLQCLADMAQFMSALSAP---------------------KAWALKMLDAWGTIP-SGYLIGNRVDMGNYRECLSEGGMLT 7 Q17701/65-192 100.0% 52.3% SSDCLFFKNCTASILNILKD-------------------NIYAIQQYDAFAKIPSAGLLEVSLVFDGSYQECHRISGV-- 8 Q9VWG4/84-212 90.5% 18.4% DLRCLADLQTLAKDVSDR---------------------KLWALRMIDSWGTFP-SGILYGNVIDLGNFDECLGIDHAVT 9 Q9V6J5/67-198 92.9% 22.0% DLLCLNDMKALMTGLGSA---------------------EYWALKMIDAWGSIP-SGLLAGNSYDLGNFDECLNIRKEIG 10 Q9W322/73-217 97.6% 17.6% DELCDRDINLIRDSINNL---------------------EEWALEFPDTWGRLP-MGLFWGHTISMGQYEECVAASSTHT 11 Q9VCK7/57-190 95.2% 20.7% DTQCLVDMKELFAGLKTG---------------------SYWALKMLDSWGSFP-SGLLYGTFYDLGNFDECLNINQEIS 12 Q9VDC5/76-207 92.9% 19.9% DLQCYADFAQLTAGLASG---------------------SLWAYRMIDSWGSIP-SGILKGHLKDLGHYDECIAIEQSAA 13 Q9VWG5/83-211 90.5% 19.9% DLECLADLALLSKDLSSF---------------------KFWALKMIDSWGLLP-SGMLAGNWWNLGNFDECIAIDHAVT 14 Q93760/79-201 96.0% 43.0% TADCLKFRNCTLIELTSVQD-------------------NVFALQQLDAFGKLP-PDILDINTFFEGSYAECQKVSGK-- 15 YP84_CAEEL/135- 96.0% 15.1% CSDCKC--TPLFQQKKSE---------------------RHWIFNVFDAMGKVP-AGIMSGNNLWVGSWSTCRKIDVVKN 16 Q23054/58-195 97.6% 19.9% PDLCKTLMKRWFQNLNSLKNGTCK-----------NSDDCLDALDQLDAFARYP---APGSPNIYDGSFRKCNDLNEKG- 17 Q9N3Z2/72-218 94.4% 17.5% SQECHEELSFLGYGVIDAARYARHHSTAAVPASMTDQERKDYLIPMMDAAGKLG-SGIVRGHILSTGAFSECKSIQMFSS 18 Q9VPZ3/53-184 95.2% 18.1% EASCLAEVRLLLTGAEAK---------------------SLPALRVFDAWGKFP-QGLLYGHFMDMGNYESCLSLDLSKS 19 O02083/57-187 91.3% 14.1% DSFCINSLGNIGKSALKFLSECSSN----------TCLEPNWAVRLIDSLPTKPPGLSRKGPFFFIGDFETCKELWSVE- 20 O18176/6-113 85.7% 44.1% --------KCDTKKLEE----------------------NMFAVQQLDSFGRLFEPGLLELLDTFEGNYQECERISGI-- 21 Q20900/97-215 91.3% 18.5% QEQCS---KCAYQKAN-----------------------NGWVLKWFDSLGK-PAAGITDGNYYWLGDYELCAALASDG- 22 Q9V7D0/87-228 94.4% 14.1% TPSCYAHLKQVQRGILSR---------------------QPWAMK--DASGTKP-SGFVFGQNYWLGSRDGCEGVRRPVG 23 Q9VZA7/100-243 96.0% 14.1% SQKCHAQLRQMQRGILGK---------------------QPWAMKVLDASGTKP-SGFVYGQNYWLGSREACRGVQRPVG 24 Q9XZS7/276-399 94.4% 15.3% HTGCGLEMQAYLTALHSS---------------------YEWAQKAYDSSGRYR-GQLLFGNDKWLGQLSFCYELNRQSL 25 Q9VYG5/19-164 78.6% 12.4% --------------------------------------SSICAVD--DASGHYT-SGFFYGNNYWMGSLALCDAIDDGQI consensus/100% ..........................................h....Ds.s............h..Gtht.C.t...... consensus/90% ...C....t....t.........................p.hshp..Du.uphs..thh.h..h..Gphp.C.tlt.... consensus/80% s..Ch...p.hhpth........................p.aAlp.hDuhGphP.sGhh.s..h..GsappC.tlpt... consensus/70% s.tChh.hpthhptltth.....................phaAlc.hDuhGphP.sGhh.sp.h..GsappC.tlst... cov pid 81 . 1 . . . . : . 160 1 O45282/60-185 100.0% 100.0% ----------------------------KYATNYCYMVLMPGKNATCHMSDG-------------------------LPT 2 O45283/50-178 99.2% 59.2% ----------------------------KYETNYCYLVLVPGRNSSCSIGGG----------------------GGFLPS 3 Q19239/56-183 99.2% 46.5% ----------------------------KYNTNYCYLMLKPGKNASCSASGSS-----------------------SAYS 4 O45470/60-192 99.2% 53.7% SE-------------------------TKYETNYCYVLLIPGKNSSHCHETKS---------------------GDLSPT 5 Q9UAQ8/39-163 96.8% 48.1% ----------------------------RYKTNYCYLILNFGKNISCSA--------------------------PSVYS 6 Q9VWG6/76-210 95.2% 23.4% SS-------------------------QDIQGKYCFMELPVAKWLGFTS---------------------------ELLA 7 Q17701/65-192 100.0% 52.3% ----------------------------KYETNYCYVLLVPGRNANCSGGSI-----------------------QNAGT 8 Q9VWG4/84-212 90.5% 18.4% ST-------------------------HNVQGKYCLSKLQLAS---------------------------------SIPT 9 Q9V6J5/67-198 92.9% 22.0% QE-------------------------RTIQGKYCFLSVSPAKILG------------------------------IETS 10 Q9W322/73-217 97.6% 17.6% ---------------------------TEIRGQYCLASLNITTFYQSVKKRGEEFS----------------RISYKQTD 11 Q9VCK7/57-190 95.2% 20.7% SS-------------------------QTIKGKYCFMAVPLRDVLDTGI---------------------------ESLE 12 Q9VDC5/76-207 92.9% 19.9% SG-------------------------STLLGKYCLASLPLQQLLG------------------------------NVGR 13 Q9VWG5/83-211 90.5% 19.9% SS-------------------------HSIKGKYCITKLTPAP---------------------------------SLLP 14 Q93760/79-201 96.0% 43.0% ----------------------------KYTTSYSYIVTYIGDNVTCDP---------------------------KTHE 15 YP84_CAEEL/135- 96.0% 15.1% AQ------------------------GQKWKGQYCLATIDAYERDNPLVYFGNMMSGPPDKHCYDKTVKNVTDDGFCFAL 16 Q23054/58-195 97.6% 19.9% ----------------------------GHRRKYCYLIQADEKMNCREEYHS------------------------ILFK 17 Q9N3Z2/72-218 94.4% 17.5% SL------------------------NRTVQGDYYRILFDMKMRPNS---------------------------FNSSCN 18 Q9VPZ3/53-184 95.2% 18.1% LGNV---------------------MTINAGAKYCLSRMQFESLLMEAAG----------------------------AD 19 O02083/57-187 91.3% 14.1% ----------------------------HRQVHYCTLKGTV----------------------------------KLGSE 20 O18176/6-113 85.7% 44.1% ----------------------------KYDTNYCYMGLIPKIKLP--------------------------------FS 21 Q20900/97-215 91.3% 18.5% ----------------------------SFDGQYCRIEMEVPDAGVESGC--------------------------PQTD 22 Q9V7D0/87-228 94.4% 14.1% ITLSRNYERVM--------HYSILTQSAPFGMDYRVIYMRHRSPWQVEIK---------------------------VMS 23 Q9VZA7/100-243 96.0% 14.1% ITLSKNFDRVM--------HYGIITQQAPFDMDYRVLYLRHNSPWQVEIK---------------------------LMS 24 Q9XZS7/276-399 94.4% 15.3% ---------------------------TEERQHFDLQFYVADVALHLP----------------------------SLNR 25 Q9VYG5/19-164 78.6% 12.4% VAPGKDNSSSAASSPESETKNSGLPFAAAHTQGYSSVYNAPPPFVPGFY-----------------VIKMQLNETLPTQV consensus/100% ................................ta.............................................. consensus/90% ............................ththpYph..h......................................... consensus/80% ............................phpspYshhhh..t.....................................p consensus/70% ............................phpspYChhhh..tp..t................................hs cov pid 161 . . . 2 ] 210 1 O45282/60-185 100.0% 100.0% TFFFRGAVCMPYSCSEQDLPTVYNQVSDQ----------PFTACAAFCSS 2 O45283/50-178 99.2% 59.2% AAFFRSATCMSVSCTSEDLPQLFNQLPL----------MPFTACAAFCSS 3 Q19239/56-183 99.2% 46.5% MLPMRLAVCLPDSCNQHEIIDIFNQLSP----------YPFTACHAYCSE 4 O45470/60-192 99.2% 53.7% TLFFRSAVCMPNSCNQREISDIINEISD----------IPFTACGSQCSS 5 Q9UAQ8/39-163 96.8% 48.1% NVTLRMAVCLPDSCSHQDMINIFNQLSP----------YPFTACDAYCVK 6 Q9VWG6/76-210 95.2% 23.4% VTNIRTAVCLPSSCSAGTMELFLKQLLKRLLGV-SDPTNLFSISETSCRI 7 Q17701/65-192 100.0% 52.3% SVAFRRAVCMPKSCASSDTVDLYNQLSAL----------PLTACATFCSQ 8 Q9VWG4/84-212 90.5% 18.4% FLALKTAVCFPASCSADHMDTMLRRLLQNLLSI-ELNPDVPLVSEGTCKT 9 Q9V6J5/67-198 92.9% 22.0% IGSFRTATCFPASCSAINMNAFVDQLMMKLLNV-SVPSSAMRISEGSCQT 10 Q9W322/73-217 97.6% 17.6% PEVFELGICVPKTCSAAKTEKLLKYAITHFYGQDVMESNYTMVTEARCKY 11 Q9VCK7/57-190 95.2% 20.7% GMQIKIATCFPASCSATQIETFAGQLYQNKVNS--SMSFNISIDEDGCQT 12 Q9VDC5/76-207 92.9% 19.9% MMNVQTAVCFPASCSATNMDTLLRRVLKQLVGL-ELNSNQNLVSENSCKT 13 Q9VWG5/83-211 90.5% 19.9% ILALKSAVCFPATCSAANMDTMLRRLFQKLLTV-EIDADVQIVAEETCQT 14 Q93760/79-201 96.0% 43.0% HVTPRFAVCMPSSCSESDLVEIFNQIIS----------FPLTTCQAFKSG 15 YP84_CAEEL/135- 96.0% 15.1% FPVLKFGVCMPNTCTNHDVKQMLSFAIRAT--------EGAVGTKSVCNV 16 Q23054/58-195 97.6% 19.9% PNRTAFGFCGPEICHGKDYASMFGSMEKTFH-----FLMDRPVCAAFCTV 17 Q9N3Z2/72-218 94.4% 17.5% LPQIGVDLCLPWSCRNEDLTGYFREALG-----------PSKALSPVCSV 18 Q9VPZ3/53-184 95.2% 18.1% ALTLSIGTCIPSSCSAAQLSRWMSGHLKDMF-------GQNSTEATLVQE 19 O02083/57-187 91.3% 14.1% TLPVTTGVCLPSNCHENQMSKLLNLAKEYL------FNETIHVDSVYCSH 20 O18176/6-113 85.7% 44.1% SLPYRSAVCMPRSCQHLDLPKLYNQLGSK----------LFTARFAKCVH 21 Q20900/97-215 91.3% 18.5% PLSIILGVCFPSACSVADLTTVSSIYLP---------YNLKVECESQNRW 22 Q9V7D0/87-228 94.4% 14.1% EQVLHIGLCLPSSCSSEEVKQLARYYVAG---------DLFAADDMFDMK 23 Q9VZA7/100-243 96.0% 14.1% EQIIHIGLCLPSACSSVEVQSLAQDYVAG---------GMFTENEIFDIK 24 Q9XZS7/276-399 94.4% 15.3% SMLLSLGECLPKSCSDIDVKSILSLDPYA---------RMLTVLGAHNTS 25 Q9VYG5/19-164 78.6% 12.4% LRIIYVGMCLPSSCSIADIGQMSSRAHV------ELPSRDLRVLDIRVPT consensus/100% ......s.Chs..Ct..ph..h.t.......................... consensus/90% ...ht.uhChP.sCpt.ph.thhp.h................h.t..s.. consensus/80% ...hphuhChPtoCsttph.phhp.h..............hhsstshsp. consensus/70% .h.hphulChPsSCottchtphhpph.t............htsstshCpp