cov pid 1 [ . . . . : . . . 80 1 PKNB_MYCTU/356 100.0% 100.0% ITRDVQVPDVRG----QSSADAIATLQ-------NRGF----KIRTL----QKPDSTIPPDHVIGTDPAANTSVSA--GD 2 PKNB_MYCTU/423 100.0% 25.0% GPEQREIPDVST----LTYAEAVKKLT-------AAGF---GRFKQA----NSPSTPELVGKVIGTNPPANQTSAI--TN 3 PKNB_MYCTU/557 100.0% 20.0% KGNQFVMPDLSG----MFWVDAEPRLR-------ALGW----TGMLD-KGADVDAGGSQHNRVVYQNPPAGTGVNR--DG 4 Q9CEF5/361-428 100.0% 27.9% TPTNVKIPNVTN----STLSQAKSKIK-------DAKL----KVGTV---HKQQSSTIAEGKVIKTDPTSGTTVRS--NS 5 Q9CEF5/430-502 100.0% 21.9% NEDIIKMKDFVG----EKIDEAMATLL------KDYGID-ESQVTQT----SVPSDSYPAGTIIKQSPKKGSSFDTKGSE 6 Q9CEF5/503-574 98.5% 26.4% -GKQVEVPDYKPNGQYMTYSQYQAALK-------AAGF---TNITLD---PQATTNQQADGYVYSVYPNVGTSVDP--TQ 7 Q9XA16/446-511 98.5% 20.9% GAPKVAVPNVID----KNIDEAKKQLE-------DKGF----EVETK-----QTESSQDEGTILSQNPDPGKELEK--GS 8 Q9XA16/379-445 100.0% 26.9% GNDKVPVPAFIG----LSKADAQQQAD-------NIDL----VLTFK----QQECEDQPKGNICAQDPKQGTDVDK--ES 9 Q9XA16/512-580 100.0% 24.6% AEEKATVPDVVG----RTCDEAKAQVE------SGGDL----TAVCT---DQPTNDPNQVGKVISTTPQSSTQVDP--GS 10 Q9XA16/581-649 98.5% 22.9% AVEKTKVPEVRG----KTLAEARQILQ-------QSGF---TNVQVA-----QGSPGDDNAKVFASNPQPGSEVDDPAAT 11 Q97PA9/366-433 100.0% 32.4% TPATIAIPDVAG----QTVAEAKATLK-------KANF----EIGEE---KTEASEKVEEGRIIRTDPGAGTGRKE--GT 12 Q9RXG3/366-432 100.0% 17.9% RSEETFIPDLRG----MTFEQARDWAR-------AAGL----VVTDW----SREPSDKTENTVLSQEPAPWANVTV--GS 13 Q97PA9/434-505 100.0% 15.3% GKQSFQISNYVG----RKSSDVIAELK-------EKKVP--DNLIKI---EEEESNESEAGTVLKQSLPEGTTYDLSKAT 14 Q97PA9/506-577 100.0% 16.7% KATTIQLGNYIG----RNSTEVISELK-------QKKVP--ENLIKI---EEEESSESEPGTIMKQSPGAGTTYDVSKPT 15 Q9S2N3/535-602 100.0% 29.4% KGSPVDVPDVTG----DDLDEARAELE-------GAGL----KVKTA---DERVNSEYDSGRVARQTPEPGGRAAE--GD 16 O69650/697-762 97.0% 23.5% GAPGSRVPSVAG----LDVDAARQRLK-------DAGF---QVADQT----NSVNSSAKYGEVVGTSPS-GQTIP---GS 17 Q9RXG3/228-294 100.0% 25.4% NPPVGEVSNVIS----QPAADAARALT-------KKGF----RVEYA----YGENGNQPIGVVIRQEPDGGTSLPT--GR 18 Q9X241/26-85 89.6% 22.4% QSQYSTVPDVVG----LSGTEACERLK-------TSGL----FCDKS-----------SSETVVDTYPRAGSRVKK--GR 19 Q9KIG4/509-576 100.0% 29.4% KGAPVDVPDVAG----DDLEDARAELE-------EAGL----EVKVA---TERVTSEYDAGRVARQDPGPGGRVAE--GD 20 T10009/419-486 100.0% 30.9% GPEQREVPDVSS----LNYTDAVKKLT-------SSGF----KSFKQ---ANSPSTPELLGKVIGTNPSANQTSAI--TN 21 Q92AI8/365-432 100.0% 36.8% SPDEVAVPDVSG----KTEDQAIALLQ-------KDGF----VIGKT---AEKNSDDVEEGKVINTDPSAGEMKEK--GT 22 O34507/425-492 100.0% 25.0% GKAKTEIGDVTG----QTVDQAKKALK-------DQGF----NHVTV----NEVNDEKNAGTVIDQNPSAGTELVP-SED 23 Q9K9Z0/367-432 98.5% 29.9% QVDDVDVPDVRE----SSFEEAEAELR-------SLGL----EVERE-----DVEDDAPAEEVVSQHPRPGSVVKQ--GS 24 Q97PA9/578-649 98.5% 15.1% KVTSVAMPSYIG----SSLEFTKNNLIQI-VGIKEANI----EVVEV----TTAPAGSAEGMVVEQSPRAGEKVDL---N 25 P72351/697-762 97.0% 27.9% GSPGSQVPSVTG----LDLDAARQRLK-------GAGF----QVADQ---PTLINSTAKLGAVVGTTPS-GQTIP---GS 26 Q99YN0/368-435 100.0% 33.8% KPTSVKVPNVAG----TSLKVAKQELY-------DVGL----KVGKI---RQIESDTVAEGNVVRTDPKAGTAKRQ--GS 27 Q9X241/86-148 94.0% 16.7% -PQKKIVPRLSQ----LNFPVAEEILK-------RLGW----NYETV-----YFPFGTEKDRVLATYPKEGQIYN----G 28 Q9RXG3/295-363 98.5% 21.7% -PAPLTVPKVED----MTLTQAQGPLG-----DSALKL---GKVIRV----DGTQTRTPEGRIIAQIPPAGASTQR--SV 29 AAL58474/368-4 100.0% 29.4% SPTTIRVPDVSN----KTVAQAKMTLE-------NSGL----KVGAI---RNIESDSVSEGLVVKTDPAAGRSRRE--GA 30 18145401/375-4 98.5% 28.4% GGKDVKIPNVVG----EKVEDAKSKLE-------GLGL----KVLEV-----TEESDQEKGIVLKVDPNVDSTVKT--GS 31 AAK99108/690-7 91.0% 17.9% SDKAEEVPDMYG----WTKETAETLAK-------WLNI----ELEFQ----------GSGSTVQKQDVRANTAIKD--IK 32 Q99UP8/510-575 98.5% 28.4% GIKQVYVEDFEH----KSFSKAKKALE-------EKGF----KVESK----EEYSDDIDEGDVISQSPK-GKSVDE--GS 33 Q9WZX4/522-581 88.1% 17.6% RIVKGLMPDLRG----LPVRDALLVLE-------SLGV---KDVEIK----------GKGWKVSEQTPPPNHPLE----G 34 SP5D_BACSU/579 88.1% 23.9% DTKTIEVPNVVG----MSVSDLESLLV---------NL----NVDAS----------GKGSKIVKQSPAAGTKVKE--GS 35 Q99UP8/441-509 100.0% 18.8% GPEKVKMPNVIG----LPKEEALQKLK-------SLGL---KDVTIE----KVYNNQAPKGYIANQSVTANTEIAI-HDS 36 Q92AI8/433-501 98.5% 20.0% GSKKITMEDYTG----RSYSETKTLLE-------QQGF---NNISAE----EAYSSEVGKGMIISQTPTQGTEV-VAKST 37 Q99UP8/373-440 100.0% 23.5% GNKYEETPDVIG----KSVKEAEQIFN-------KNNL----KLGKI---SRSYSDKYPENEIIKTTPNTGERVER--GD 38 Q9X241/151-203 79.1% 9.0% KESYFLVENFVG----KKVDELKDDPR----------------VLLL----------GTGDTVVAQYPPEGSIA-----T 39 Q97H83/601-661 91.0% 23.9% MLKDVVIPNIRG----MKKEDAIKTLK-------NLNI----DADVD----------GNGEYVSNTTPIPGITVKE--GT 40 Q9K9Z0/433-499 97.0% 24.6% GPEEGQMIDVTG----RTIEEAQRLLN---------DF---ADVRLE----ERETNDVSPGIVIEQTPEAGESVVP-EET 41 Q99YN0/436-508 94.0% 11.7% GNKGFDMENYKG---LDYQEAMNSLIETYGVPKSKIKI----ERIVT--------NEYPENTVISQSPSAGDKFNPNGKS 42 Q92AI8/502-568 100.0% 22.4% GAEPITLKDLRG----YTKTAVEDYAS-------PLGL----KVSSK----EENSNSVEKGQVISQSPSAGTAINA--GD 43 Q97IC2/442-509 100.0% 19.1% GDTDQTLPSLVG----LPESAARAQIK-------QYGC----NVGSV---TQEYSDDVAQGNVISQSPSEGSQIKK--GM 44 Q9KGU3/545-602 86.6% 11.9% TTNVDGIPDLIG----KSKREVLEIVR-------PLGI----SVKFH-----------GSGFCYEQEPAPGKKIEN---G 45 18145401/513-5 100.0% 18.8% KSETINIPDVSG----KSVEEAKSILA-------NAGVG--VNPVKG----EAAKSEGEAGKVYSQSQSGSLTIKQ--GE 46 18145544/603-6 91.0% 23.9% KDESVIIPDLRG----DKVTSAEKTLN-------ELGI----NCVIE----------GDGTFVTSVTPIPGYKVKK--GD 47 Q97IC2/375-441 100.0% 25.4% SVSKVKVPKIIG----LSESDAKGKVE-------DAKL----KFQVV----DRVKSSKPKGTVVTCYPNEDTEVDS--GT 48 O34507/493-559 100.0% 26.9% GPEDITLRDLKT----YSKEAASGYLE-------DNGL----KLVEK----EAYSDDVPEGQVVKQKPAAGTAVKP--GN 49 18144223/604-6 91.0% 19.4% EKETVIIPEVRG----LPINDTTSMLK-------ELGI----SYEIE----------GEGEFIVESNPAPGYPISP--DT 50 Q54781/606-666 91.0% 16.4% SDKVEEIPDMYG----WKKETAEAFAK-------WLDI----ELEFE----------GSGSIVQQQDVRANTTIKN--IK 51 Q9S2N3/603-666 95.5% 24.6% GPRMIEVPDVVG----DSVDDAKQKLE-------DAGF----EVDED-----RGLLGLFGDTVKKQSVDGGDTAPE--GS 52 18145544/668-7 89.6% 17.9% NEKEIVVPDFRK----LNKEEAEEILK-------YLGL----KGEFE-----------GEGEIKEQSISAGEIIKS--GD 53 Q97H83/666-725 89.6% 22.4% NNNDVIVPNLTG----YSKKEAEETLK-------SLGL----DFKIS-----------GDGVVESQSIDAGKQVNK--GT 54 6779111/691-75 92.5% 14.9% TNKLTELPDMYG----WSKANVEQFAK-------WTGI----KVTYK---------GSTSGKVRKQSIDVGKSINK--IK 55 Q9S2N3/400-467 100.0% 22.1% SGQFTKVPPLLS----KTEAQARDRLD-------DAGL----DVGKV---RHAYSDTVERGKVISTDPGVGDRIRK--ND 56 Y063_BORBU/51- 98.5% 20.3% NNEITVVPNLYS----LAIEDAVLELQ-------RKELI--PHIEFK-----FSSSALDKGKVIDQGPKPGTVLRH--GN 57 Q99YK1/690-751 92.5% 16.4% SDRFVEVPDMYG----WTKSNVKTFAK-------WTGI----DISFK---------GTDSGRVMKQSVDVGKSLKK--IK 58 18145527/615-6 91.0% 23.9% KSKEEILPEVRG----MSLDKAKAILD-------KDNI----KYSVE----------DGGNSVVDMNPKPGYTIKE--GD 59 Q9CH71/704-763 89.6% 17.9% DKDQV-MPDMYD----WSKKEVEQLAN-------WFGI----KVTYE----------GSGNKVLTQSIETSTNVKK--GQ 60 O07106/624-684 91.0% 10.4% ASDKVTVADYKN----MTPAEALANAK-------VNGV----DPVII----------GDGEKIKKQSTPSGEKLMP--NQ 61 Q9KIG4/577-640 95.5% 26.2% GPEMAEVPDVVG----DSVGEAREKLE-------GAGF----RVDED-----RGLLGLFGDTVKGQSVDGGDSAPK--GS 62 Q9K9S3/580-638 88.1% 19.4% DEPLVEVPDLVG----RTKRDLHESYY-------ELKI----DADGK------------GDVVVAQAPEPGTKVAV--GS 63 AAL58474/436-5 100.0% 12.5% PNKSFTLGNYKE----HNYKDILKDLQ-------GKGVK--KSLIKV---KRKINNDYTTGTILAQSLPEGTSFNPDGNK 64 O07667/614-674 91.0% 17.9% KTEKITVADYRN----LSADVAAADAQ-------KSGL----QPIVV----------GDGKKVKKQSTANGDQLIS--GE 65 O34507/356-424 97.0% 29.6% MPKDVKIPDVSG----MEYEKAAGLLE-------KEGLQVDSEVLEI------SDEKIEEGLMVKTDPKADTTVKE--GA 66 O83329/101-172 100.0% 23.6% QAVTTHVEDYRG----LQVEEAVARIA-------AAEVERRISVKTP---HLYRFSTGAAGTILEQDPAPGAVLSA--DV 67 Q9K9S2/589-649 91.0% 19.4% EEEGYELADFIG----ESARSAREELE-------QAGM----KVYVL----------GEGDTVEGQQPYSGHKLLE--GE 68 18145527/679-7 89.6% 20.9% YNKDVIVPDFNG----LSMEKAKEILN-------KIGL----KGTFA-----------GEGVIKEQSVVQGDVVKS--GT 69 Q929X8/598-658 91.0% 14.9% KLASEKVPVVAE----KTVDEAKKAVQ-------DKGL----EPVVV----------GNGKKIVQQLPLANSEIMQ--GQ 70 Q9ZFS8/482-550 100.0% 23.2% DPDKIQVPDFTF----KYIGSVKECFN-------AAGW----QMKVV----EVDENTYGEGSVRDQFPTAGTDVDPENMP 71 Q53725/596-656 91.0% 16.4% NAEYSKVPDVEG----QDKQKAIDNVS-------AKSL----EPVTI----------GSGTQIKAQSIKAGNKVLP--HS 72 PBPB_BACSU/597 91.0% 14.9% ETKAQTMPDLTD----QTVAAAQKKAK-------EENL----TPIVI----------GSDVAVKEQYPKADEEVLT--NQ 73 Q9RHR8/280-346 95.5% 15.7% KNSSVELPNLKG----QTLAAIRKQAG------TNYKI----EVDSN-------NEDKDTATVTQQNPDPSQYRRILKGE 74 Q97IC2/512-577 97.0% 25.0% EVKKATVPSVYG----KTSDSASSILQ-------NAGF----GVNVQ---NKDVTNADQNGIVIEEYPN--GYVNK--GT 75 O83329/34-100 98.5% 22.1% SPDQVMTPHIVG----KDFVSAAIEMQ-------AKEL---YPRVQL-----RFSTREKPGVVLEQNPPAGAIVKA--GR 76 Q9K9Z0/500-565 98.5% 28.4% TSDIV-LENMQG----MTENEAHGYLQ-------ENGL----RTRFS----YDYSSSVAEGRVISHSPASGATVSE--GD 77 18144223/668-7 91.0% 17.9% LNSDVIIPDFKN----YSKESAEKLLN-------QLGL----IGEFV----------GEGPSVTKQSISPDEVVNG--NS 78 Y063_BORBU/119 100.0% 17.6% GAIINRVDSFIG----KNIDDVIINLK-------ANSFD-NSKLLYHIVQPLEVESELPKGIIISQNPSPGSQISS--LT 79 Y063_BORBU/195 94.0% 20.3% DHLDKHVKNYVG----IYYKDAIASLL-----SDSINF----DIDLA--------NIGDFGNIISQSIPPGTKINE--SD 80 Q9KIG4/375-441 98.5% 19.1% SGQFTKVPPLLA----KTEKEARDRLA-------DAGL----DAGQV---SEAYSDTVERGSV-ATDPEAGARIRT--ND 81 Q9K9S2/650-707 86.6% 13.8% --ESYTLPSMIG----WSLRDVLKVAN-------VLDV----NVNLF-----------GQGFVVGQSIEEGDTITP--GD 82 O07667/675-730 83.6% 12.5% ---EKLMPDVTD----WSKADIMKLGK-------ILGV----EVTFH-----------GDGYCKEQSLAPYEKITD---K 83 O07106/685-740 83.6% 18.5% --TNY-MPDLTG----WSKSDVTKFGD-------LLGL----TVEFK-----------GEGYVTKQSIAAETEITE---K consensus/100% ......h..h...........h........................................h................. consensus/90% ......h.sh.s.......tts.t.ht.........th....th................s.lhtp....st.h.....t consensus/80% t.p.h.lsshhs.....shtps.t.hp.......t.sh....ph...............tshlhtpsstssptht...tp consensus/70% tspthtlPshhu....hshppApthlp.......thsh....phth............ttstVhppsPtsGpplp...ss cov pid 81 ] 88 1 PKNB_MYCTU/356 100.0% 100.0% EITVNVST 2 PKNB_MYCTU/423 100.0% 25.0% VVIIIVGS 3 PKNB_MYCTU/557 100.0% 20.0% IITLRFGQ 4 Q9CEF5/361-428 100.0% 27.9% SVDIYVST 5 Q9CEF5/430-502 100.0% 21.9% KITFEVSS 6 Q9CEF5/503-574 98.5% 26.4% EIVVTYSV 7 Q9XA16/446-511 98.5% 20.9% TVTLEVAK 8 Q9XA16/379-445 100.0% 26.9% TVNLVVST 9 Q9XA16/512-580 100.0% 24.6% KVTIVVGK 10 Q9XA16/581-649 98.5% 22.9% PITLMTVP 11 Q97PA9/366-433 100.0% 32.4% KINLVVSS 12 Q9RXG3/366-432 100.0% 17.9% KVKLVIAG 13 Q97PA9/434-505 100.0% 15.3% QIVLTVAK 14 Q97PA9/506-577 100.0% 16.7% QIVLTVAK 15 Q9S2N3/535-602 100.0% 29.4% TVTLTVSK 16 O69650/697-762 97.0% 23.5% IVTIQISN 17 Q9RXG3/228-294 100.0% 25.4% LVVLTVNK 18 Q9X241/26-85 89.6% 22.4% TVNLYYEN 19 Q9KIG4/509-576 100.0% 29.4% TVTLTLSK 20 T10009/419-486 100.0% 30.9% VITIIVGS 21 Q92AI8/365-432 100.0% 36.8% KINLFVSI 22 O34507/425-492 100.0% 25.0% QVKLTVSI 23 Q9K9Z0/367-432 98.5% 29.9% TVRLFVST 24 Q97PA9/578-649 98.5% 15.1% KTRVKISI 25 P72351/697-762 97.0% 27.9% IITIQTSS 26 Q99YN0/368-435 100.0% 33.8% SITLYVSI 27 Q9X241/86-148 94.0% 16.7% KLILLIDT 28 Q9RXG3/295-363 98.5% 21.7% PVQVLVST 29 AAL58474/368-4 100.0% 29.4% KVNLYIAT 30 18145401/375-4 98.5% 28.4% EVKLTVSG 31 AAK99108/690-7 91.0% 17.9% KITLTLGD 32 Q99UP8/510-575 98.5% 28.4% TISFVVSK 33 Q9WZX4/522-581 88.1% 17.6% PVILFLSD 34 SP5D_BACSU/579 88.1% 23.9% KIRVYLTE 35 Q99UP8/441-509 100.0% 18.8% NIKLYESL 36 Q92AI8/433-501 98.5% 20.0% DVKFVVSK 37 Q99UP8/373-440 100.0% 23.5% SVDVVISK 38 Q9X241/151-203 79.1% 9.0% KVILILGE 39 Q97H83/601-661 91.0% 23.9% KVVLYTGD 40 Q9K9Z0/433-499 97.0% 24.6% TVTLIYSA 41 Q99YN0/436-508 94.0% 11.7% KITLSVAV 42 Q92AI8/502-568 100.0% 22.4% TIEIVISA 43 Q97IC2/442-509 100.0% 19.1% TIDLVISR 44 Q9KGU3/545-602 86.6% 11.9% RLNLYF-K 45 18145401/513-5 100.0% 18.8% KVTITINY 46 18145544/603-6 91.0% 23.9% SITLYAGS 47 Q97IC2/375-441 100.0% 25.4% VVRVDISS 48 O34507/493-559 100.0% 26.9% EVEVTFSL 49 18144223/604-6 91.0% 19.4% KITLIAGD 50 Q54781/606-666 91.0% 16.4% NIKLTLGD 51 Q9S2N3/603-666 95.5% 24.6% TVTITI-- 52 18145544/668-7 89.6% 17.9% KIKFKLEG 53 Q97H83/666-725 89.6% 22.4% VLTLKLEE 54 6779111/691-75 92.5% 14.9% KIKITIGD 55 Q9S2N3/400-467 100.0% 22.1% SVSLTVSD 56 Y063_BORBU/51- 98.5% 20.3% KVIIFISK 57 Q99YK1/690-751 92.5% 16.4% KMTITLGD 58 18145527/615-6 91.0% 23.9% EIKLYTKT 59 Q9CH71/704-763 89.6% 17.9% TLTVKMGN 60 O07106/624-684 91.0% 10.4% KLILITNG 61 Q9KIG4/577-640 95.5% 26.2% TITIEI-- 62 Q9K9S3/580-638 88.1% 19.4% TIRLYMDD 63 AAL58474/436-5 100.0% 12.5% KLTLTVAV 64 O07667/614-674 91.0% 17.9% KLILYTGG 65 O34507/356-424 97.0% 29.6% TVTLYKST 66 O83329/101-172 100.0% 23.6% ELRFVVSK 67 Q9K9S2/589-649 91.0% 19.4% RVILRTES 68 18145527/679-7 89.6% 20.9% SIEFKLDK 69 Q929X8/598-658 91.0% 14.9% KVILMTDG 70 Q9ZFS8/482-550 100.0% 23.2% EIQLKVST 71 Q53725/596-656 91.0% 16.4% KVLLLTDG 72 PBPB_BACSU/597 91.0% 14.9% KVFLKTGG 73 Q9RHR8/280-346 95.5% 15.7% TIKVQTQK 74 Q97IC2/512-577 97.0% 25.0% TVTIVIGR 75 O83329/34-100 98.5% 22.1% YVDLVVSQ 76 Q9K9Z0/500-565 98.5% 28.4% DVTIVVSR 77 18144223/668-7 91.0% 17.9% KITLTLGY 78 Y063_BORBU/119 100.0% 17.6% DLQFLISK 79 Y063_BORBU/195 94.0% 20.3% KILITIAK 80 Q9KIG4/375-441 98.5% 19.1% SVSLTLSK 81 Q9K9S2/650-707 86.6% 13.8% YMVVELAS 82 O07667/675-730 83.6% 12.5% KLSFTLEE 83 O07106/685-740 83.6% 18.5% KLTVTLEG consensus/100% .h.h.... consensus/90% .l.l.ht. consensus/80% pl.lhhst consensus/70% plplhlut