cov pid 1 [ . . . . : . . . 80 1 Q9GYT3/80-218 100.0% 100.0% DSQDKYVEFRYDPISGKYSHVNNDGSRINPFV--VKNVERHSE---------KQYAVYLHKKDSNEEGS--IYWKFNLKS 2 O76677/108-246 100.0% 87.4% DSQNRYVEFQYDPISGKYSHVNKNGSRINPFV--VKNVERHSE---------KPYDAYLHKKDKNEEGS--IYWKFNLKS 3 Q9N4T0/82-221 100.0% 50.0% RFKNRYFEFKYEIVRGNYSHTNEDELAVKPFI--VRNIERHSDG--------EPYDVYLHKIKPDEEGM--IYWKFNLKA 4 Q9N4T0/297-432 100.0% 50.0% RFKNRYFEFKYEIERGKYSHTNEDESAVKPFL--VKNIERHADD--------DTYDVYLQKIKPDEEGM--IYWKFDLKA 5 O62065/75-216 100.0% 59.1% LGNHRYFAFKYEIVRGKYSHTNKDGSAVKPFI--VKNVERHSDE--------EPYDVYLQKKKRNEEGM--IYWKFNLTS 6 O45155/103-246 100.0% 28.1% GTVADYATFEYNVTSDEYLRLNDDGTKIQPWI--VKNIERKVKFYYFESISAIEQTAFIHKIEPNEDGV--IYWKFELVD 7 Q9GYU0/124-263 98.9% 39.3% NSGYNYVKFTYDILNNTYSHDNEDGSPVAPYF--VDKIERVVDR--------KKNEAYLHQEFPDDFS--NMYWAFNLKN 8 O76676/122-261 98.9% 37.1% NSGHNYVKFTYDILNNTYSHDNIDGSPVAPYF--VDKIERVVDR--------KNNEAYLHQEFPDDFS--NMYWAFSLKN 9 O76677/284-386 98.9% 34.8% NSGDNYVKFTYSILNNTYSHDNIDGSPVAPYF--VDKIERLVDR--------TNNEVYLRQEFPGVFS--NMYWAFNLTN 10 P91472/272-395 98.9% 33.7% ESGQNYVKFTYDIINNIYSHDNEDGSPVNPKQ--VFNIKRVVDE--------ENNEAYIGQEALYRRS--NMYWQFDLRN 11 P91470/284-408 98.9% 31.5% ESGQNHVKFTYDIINNIYSHDNQDGSPVNPKQ--VFNIKRVVDE--------ENNEAYIGQEAPYRRS--NIYWMFDLRN 12 O76682/269-410 100.0% 31.1% ESGKNYIKFTYDVINNVYSHNNVDGSDVSPRK--LQYIERIVHE--------GNNEAFIQPDYPEEVNGGHIDWMFQLKN 13 Q9GYT7/308-426 100.0% 30.0% ESGKNYIKFTYDVINNVYSHNNADGSDVSPRE--LQYIERIVHE--------GNNEAFIQPDYPEEVNGGHIHWMFRLKN 14 Q9N4T0/514-652 98.9% 33.7% KTGENYAKFTYNFINNLYSHTEPDGSPVRLFD--FNGLERVEDY--------TENTVFLRRKNPKEKG--NIRWALNLRI 15 O62065/258-400 98.9% 33.7% KTGENSAKFKYNFINNSYSHTQPDGSPIRLFN--FNGMERVEDY--------TESDVFLRREIPEKKG--NIGWALDLKI 16 O76678/67-205 100.0% 31.1% ETGRDYAKFTYDVISNTYSQSYEDGSPVKPYL--ASNVEHVVDR--------RLNVAYIHMKEPINKRIGLINWEFDFNS 17 Q9GYU0/329-467 100.0% 31.1% ETGKDYAKFTYDIISNTYSQNFEDGSPVKPYL--ASNAERVVDR--------RSNVAYIHMKEPINKRIGFINWEFDFKS 18 Q9N4T3/149-281 97.7% 37.8% DLEDNYVKFTYDIISNTYSHKRQNGSSLEPYF--VGNVKRVENR--------TLGVVYFEKID--KTIIGTILWEFGLKV 19 O18169/56-195 97.7% 38.9% NIEENYLKFTYNIIENTYSHKNRDGSLAEPCV--ASAVERVVNR--------KLNEAYLQKIR--GEDYGLIYWDFNLQF 20 O18169/354-490 98.9% 36.0% SSGDNYVKFTYNVISNTYSQTHEDGSKIDSFY--VFNIERVEDR--------SLNQVYLRKRNTLFMG--SITWQFIWEL 21 Q9GYT7/517-608 97.7% 30.0% ISRENHVKFTYDVMRDMYSHTKPNGSSYVPYN--VENIERVVDK--------RLNQVYLHR-NDLTKY-TYISWVFDMTI 22 O76682/482-578 97.7% 31.1% MSKENHVKFTYDVTSDTYSHTKPNGSSYVPYN--VGNIERVVDK--------RLNQVYLHR-NDSTKY-TYISWAFDTTI 23 O45155/644-737 97.7% 27.8% ISRENHVKFTYDVMRDTYSHTQLNGSSYVPYN--VANIERVVDK--------RLNQVYLHR-NDSKKD-TYLNWVFDMTI 24 P91472/94-208 97.7% 33.3% KPGQNSVKFTYDIIKNTYSHDNDDGSQVRPYV--ASNIERVVDK--------ENNETYLHP-EYPLEI-AHIHWVFNVEI 25 P91470/77-216 97.7% 32.2% KPGQNSVKFTYDIIKNTYSHDNDDGSQFRPFV--ASNIERVVDK--------ENNETYLYP-EYPLEF-AHIHWVFNVEI 26 P91472/473-609 98.9% 34.4% TSEANYVKFWYNIVRNTYSQTHTNGSPVKPYL--VANIERTIDT--------RLGEVFLHKKERSEHW-ASIAWFFNIDV 27 P91471/41-181 98.9% 34.4% TSEANYVKFWYNIVRNTYSQTHTNGSPVKPYL--VANIERTIDT--------RLGEVFLHKKERSEHW-ASIAWFFNIDV 28 Q9JI78/483-604 100.0% 18.3% EKISKQFHLRYDIVRDRYIRVSDNNTNISGWENGVWKMESIFRK-------VEKDWNMVYLARKEGSSFAYISWKFECGS 29 AAH00963/465-5 100.0% 17.2% EKISKQLHLCYNIVKDRYVRVSNNNQTISGWENGVWKMESIFRK-------VETDWHMVYLARKEGSSFAYISWKFECGS 30 Q9TW67/440-573 98.9% 36.0% GPAQNYLEFNYDVITDTYSQPPEIGFSAQAFE--LENVQRVEET--------DWNMTYLCRKRGDAPG--NISWHFDLKS 31 O18170/214-337 97.7% 26.7% NSGEEYSKFTYDIINDVYSHSPKEGFMSQAYY--MDNIQRCEEP----------DHITVHLCKIFMEKTATISWHFDLQS 32 Q9NBD5/472-580 100.0% 11.1% ELQKRQLNVRYSCATDTYERYAKEGEHITILDS-YKTWQKAQFSSKNIFRKVERDWKMAYLARLEDTDCGEIAWTFDFSK 33 O18173/50-183 98.9% 21.3% TPGENILDFEYDIVKDKYSQSPENGLFSQVYD--VKNIRRIRDT--------NTNEVYFGLVDGADHG--TISWRFDKDL consensus/100% ....p..th.Yp..ps.Y.p....t.....h...h..hpph................hh............h.W.h.h.. consensus/90% ..ttp.hcFpYshhpshYsp...ss..htsh...h.thc+h.c.........t...shl............h.W.Fphp. consensus/80% p.tpphhcFpYsllpshYSpsp.sGo.hpsa...htplcRh.ct........p.s.salt..t..t.....I.WhFshp. consensus/70% pstpsah+FpYsllpspYS+sppsGS.lpPa...ltslERh.-p........p.spsalph.p..ppt...I.WtFshp. cov pid 81 . ] 100 1 Q9GYT3/80-218 100.0% 100.0% TRKILEKLEIRMVSINNIAN 2 O76677/108-246 100.0% 87.4% TEKILEKLEIRMVSINNIAD 3 Q9N4T0/82-221 100.0% 50.0% TDKVVKTLVIRMIGINQTLN 4 Q9N4T0/297-432 100.0% 50.0% TDKVVKTLVIRMIGINQTLN 5 O62065/75-216 100.0% 59.1% TGKVLETLVIRMVGINQTLN 6 O45155/103-246 100.0% 28.1% TPEMFVNQVTITMKYLYKII 7 Q9GYU0/124-263 98.9% 39.3% DGKSVEKVVISIPGIEEIAN 8 O76676/122-261 98.9% 37.1% DGKSVEKVVISIPGIEEIVN 9 O76677/284-386 98.9% 34.8% DGKLVEKVVISIPGIEELTN 10 P91472/272-395 98.9% 33.7% TGKNVEKVVVKMTGMDEITQ 11 P91470/284-408 98.9% 31.5% KGRNVEKVVVKMTGMDDITQ 12 O76682/269-410 100.0% 31.1% DGKSVKKVVIKMAGIDDILK 13 Q9GYT7/308-426 100.0% 30.0% NGKSVKKVVIKMAGVDDILK 14 Q9N4T0/514-652 98.9% 33.7% DGKYVEKVVIGIIGIEEIAN 15 O62065/258-400 98.9% 33.7% DGKSVEKVVIRMIGIEEIAN 16 O76678/67-205 100.0% 31.1% PGRTVEKLDIKLAGMDEIVN 17 Q9GYU0/329-467 100.0% 31.1% PGRTVKKLDIKLAGMDEIAD 18 Q9N4T3/149-281 97.7% 37.8% VGKSIEKIVIKMNGMQEIDD 19 O18169/56-195 97.7% 38.9% FGKSFEKIEIKMTEIEEIPS 20 O18169/354-490 98.9% 36.0% VGKSIEKIVIKIAGIEEYLK 21 Q9GYT7/517-608 97.7% 30.0% DGKVVVKLTIKVSGMEKRAS 22 O76682/482-578 97.7% 31.1% DGKVVDKLTIKVSGMEECAW 23 O45155/644-737 97.7% 27.8% DGKVVDKLTIKVPGMEQQQL 24 P91472/94-208 97.7% 33.3% PGKSVEKILVQVPGIEHNAD 25 P91470/77-216 97.7% 32.2% PGKSVENIMVQVPGMENITR 26 P91472/473-609 98.9% 34.4% KGKLVEKIIIRMSGIEELIL 27 P91471/41-181 98.9% 34.4% KGKLVEKIIIRMSGIEELIL 28 Q9JI78/483-604 100.0% 18.3% AGLKVDTVSIRTSSQSFESG 29 AAH00963/465-5 100.0% 17.2% VGLKVDSISIRTSSQTFQTG 30 Q9TW67/440-573 98.9% 36.0% LKKSIEKIEIRMAGIQKFEK 31 O18170/214-337 97.7% 26.7% FGQPIRKVEIRISGFAEFSP 32 Q9NBD5/472-580 100.0% 11.1% TNLKVKSYNLVFETKTFGDG 33 O18173/50-183 98.9% 21.3% NNNKIGRVDIEVRDDEEYSY consensus/100% ....h.p..h.h.t...... consensus/90% .sp.lcpl.lph.shp.... consensus/80% ss+.lcpl.Iph.uhpph.. consensus/70% sGK.lcKlsI+hsGhpphht