cov    pid  1 [        .         .         .         .         :         .         .] 71
 1 SUIS_HUMAN/1-5 100.0% 100.0%    GKCPNVLNDPVNVRINCIPE-QFPTEGICAQ-RGCCWRPW----------------NDSLIPWCFFVDNHG   
 2 G2826521/1-50   94.3%  43.4%    AEC---PVVNELERINCIPD-QPPTKATCDQ-RGCCWNPQ----------------GAVSVPWCYYSKNHS   
 3 MUA1_XENLA/4-0  88.7%  22.6%    AEC----TVDPSVRTDCGY--PGITDKECRE-KGCCYDE-----------------CIPDVIWCFEKAVPV   
 4 MUC1_XENLA/1-4  88.7%  20.8%    EHC----HVKPSKREMCGS--KGITKKQCKK-KNCCFDP-----------------KGHGGIHCFHRKPKG   
 5 MUA1_XENLA/1-4  88.7%  28.3%    QDC----SVAPNMRVNCGY--PTVTEADCRA-VGCCFDS-----------------SILNTKWCFYNATAG   
 6 MUC1_XENLA/5-0  88.7%  26.4%    ADC----KVAPSSRVDCGF--GGITADQCRQ-RNCCFDS-----------------SISGTKWCFYSTSQG   
 7 MUA1_XENLA/3-0  83.0%  18.9%    PEC-------AADRVDCGY--SGITQADCEG-KGCIFDS-----------------TIPETKWCFYTEAEA   
 8 MUC1_XENLA/2-0  88.7%  24.5%    GEC----KMEPSKREDCGY--SGITESQCRT-KGCCFDS-----------------SIPQTKWCFYTLSQV   
 9 MUA1_XENLA/2-0  88.7%  26.4%    LEC----SGDPTKRIDCGF--PRITEKQCIL-RGCCFDS-----------------SISGVKWCYARTVIT   
10 MUC1_XENLA/6-0  83.0%  28.0%    AMC----SGPPTKRRDCGY--PGISSSVCIN-RGCCWDN-----------------SVMNVPWCFYRT---   
11 XP2_XENLA/1-47  88.7%  26.4%    EDC----KGDPFKRTDCGY--PGITEGQCKA-KGCCFDS-----------------SIVGVKWCFFPRTAR   
12 ITF_HUMAN/1-47  88.7%  26.4%    NQC----AVPAKDRVDCGY--PHVTPKECNN-RGCCFDS-----------------RIPGVPWCFKPLQEA   
13 XP2_XENLA/2-0   83.0%  24.0%    AQC----LFSPGDREDCGY--SSITPMECMK-RGCCFDA-----------------SITGVKWCFHQK---   
14 SP_HUMAN/1-48   90.6%  24.5%    CQC---SRLSPHNRTNCGF--PGITSDQCFD-NGCCFDS-----------------SVTGVPWCFHPLPKQ   
15 XP4_XENLA/3-0   90.6%  24.5%    RDC---SAVEPKKRVNCGP--PGVSPDECIK-NGCCFNS-----------------DVGGVPWCFKPEIKK   
16 PS2_HUMAN/1-47  88.7%  26.4%    ETC----TVAPRERQNCGF--PGVTPSQCAN-KGCCFDD-----------------TVRGVPWCFYPNTID   
17 XP4_XENLA/1-47  88.7%  22.6%    YRC----GVKPKSRDNCGP--PGISPDECVK-KGCCFDD-----------------SDPDSIWCYTPWKFE   
18 XP4_XENLA/4-0   88.7%  28.3%    LQC----AVLPKARINCGY--PDITMDQCYK-KGCCYDS-----------------SESDSIWCFYPDIED   
19 XP4_XENLA/2-0   90.6%  20.8%    TIC---NPAEPKARVNCGY--PGITSQDCDK-KGCCFND-----------------TIPNVVWCYQPIIEA   
20 XP1_XENLA/1-47  88.7%  24.5%    EQC----SVERLARVNCGY--SGITPQECTK-QGCCFDS-----------------TIQDAPWCFYPRATP   
21 ZPB_RABIT/1-46  86.8%  20.8%    GLC---DSVPVQDRLPCAT--APISQEDCEE-LGCCHSSE-------------------EVNACYYGNTVT   
22 P79159/1-46     86.8%  28.3%    DWC---GSIPAGDRLPCAP--SPISRGDCEK-RGCCYSPG-------------------EVNSCFYGDTVT   
23 Q91673/1-47     88.7%  17.0%    DTC---SAIKREDRLSCAK--APVSQDLCQG-LGCCYTPS------------------DPSMPCYYGNKLT   
24 Q90311/1-42     79.2%  18.9%    DKC----VVADFEQIQCGP--PGISGAECEA-INCCFNG----------------------QHCFYGRAVT   
25 Q91236/1-42     79.2%  20.8%    IFC----GVDPYLRIQCGV--DDITAAECEA-LKCCFEG----------------------YQCFFGKAVT   
26 E331572/1-42    79.2%  15.1%    QTC----EVVDKDKVSCGL--SGITAAQCQA-ISCCFDG----------------------RMCFYGKTVT   
27 P79817/1-42     79.2%  18.9%    KSC----EVPRDVRVPCGV--PDISPSACDA-IDCCHDG----------------------QSCYFGTGAT   
28 SP_HUMAN/2-0    88.7%  28.3%    DQC----VMEVSDRRNCGY--PGISPEECAS-RKCCFSN-----------------FIFEVPWCFFPKSVE   
29 SUIS_HUMAN/2-0 100.0%  32.7%    FSVQWNQIFSENERFNCYPDADLATEQKCTQ-RGCVWRTG---------------SSLSKAPECYFPRQDN   
30 SUIS_RABIT/2-0 100.0%  23.6%    FRVQWDQTFLESEKITCYPDADIATQEKCTQ-RGCIWDTN---------------TVNPRAPECYFPKTDN   
31 SUIS_RAT/2-0   100.0%  29.1%    FIVRWCRTFSDNEKFTCYPDVGTATEGTCTQ-RGCLWQPV---------------SGLSNVPPYYFPPENN   
32 Q62005/1-44     83.0%  17.0%    ERC-----QVASGHIPCMV--NGSSKETCQQ-AGCCYDST-------------------KEEPCYYGNTVT   
33 G2826521/2-0   100.0%  25.9%    YTVEWSIKIRDEEKIDCYPDENGASAENCTA-RGCIWEAS----------------NSSGVPFCYFVNDLY   
34 LYAG_HUMAN/1-5  92.5%  30.5%    TQC----DVPPNSRFDCAPD-KAITQEQCEA-RGCCYIPAKQG----------LQGAQMGQPWCFFPPSYP   
35 Q19004/1-56    100.0%  26.8%    YQNTNSQSVDVSKRVDCYPE-PGASQDACQS-RGCIWTEAPS-------------SSPVGTPWCYYPTESG   
36 Q20722/1-49     88.7%  32.7%    FQF-----SIAGPRINCYPE-PSASQVLCEA-RGCIWNPIDN---------------IDGSPSCFFKDGVG   
37 D1024476/2-0    90.6%  27.8%    SSV----GRLVNPRYECGF--PGVTEFHCVAIRGCCWDAN----------------SPFRVPQCFQPNGPK   
38 D1024476/1-66   92.5%  15.7%    NTC---ALHDLRNRIDCGY--VGISAAECEVTPYCCYNPIFLTDTEVRNATGNSITSATAVPWCYYNVFFI   
   consensus/100%                  .............p..Ch......o...C.....Cha..........................ha......   
   consensus/90%                   ..s..........+..Ch.....ho.t.C.t..sChaps........................Cah.....   
   consensus/80%                   .pC.....h.sttRhsCh...ssho.tpC.t.huCCass....................ts..Caas....   
   consensus/70%                   tpC....th.sppRhsCu...sslottpCpt.pGCCass.................t..ts.hCaaspt.s