cov pid 1 [ . . . . : . . . 80 1 C0QWI7_BRAHW/9-241 100.0% 100.0% VLNDYFMRYMFAKE-G-HERILLNLINAVRTDYNQEPFEEVKVLNTFNLKETINDKQSIVDVRAVTKSGETVLVEIQRIG 2 C0QWG9_BRAHW/22-253 96.1% 39.8% RINDYFIRYLFSHE-G-NENIALNFINAVFKDLGFETFKKIEILNPFNIAENYDEKESIVDIKAITESGITVLIEIQARG 3 C0R1Y5_BRAHW/6-242 98.3% 32.4% RINDYFIRYLLASE-G-NEDILENIVNSVLKDLGFEEVHNLHIINPHNLPENINLKESVLDVKAITKSNKKIIIEIQLSG 4 C0QWD4_BRAHW/7-245 97.9% 33.7% -LNDLFVRYLIGTE-G-DEDILENIVNAVLNDAGFESVSNLEIINPYNLAENENLKESILDVKAKTKDGKKILIEIQLIG 5 C0QZF9_BRAHW/13-240 97.0% 38.3% PLNDYFVRYLFTDK-GSSESILLDFINSIMINANMKTFRSVEILTPFNLKKNKNLKETIVDVKCITQNGAVVIIEIQLQG 6 A6TLA0_ALKMQ/8-243 99.6% 30.8% PMNDFVFKALFGREDATSKQLLIELLNDTLRAKGEDLIASVKYLNPFNYKEYEFDKLSVLDIKAETEKGERVNIEVQVKP 7 A6L3Y8_BACV8/13-241 97.0% 22.0% PYTDFAFKLLFGTD-L-NKEILIGFLNALFD--GKQVIEDVIYLNTEHLGSKETDRRAVFDVYCENEKGEKILIEMQRGE 8 R7ED70_9BACE/13-240 97.0% 22.1% PYTDFGFKLLFGTA-M-NKELLISFLNALLF--GEEVIKDVTYLNAEHLGTQEYDRRAVFNVYCENEKGEKFLVEMQRGE 9 B3QUJ9_CHLT3/11-238 95.3% 18.8% PLTDFGFKKLFGTE-P-NKILLMDFLNQILP--EKHQIQELSYSKNEHVGQQELDRKAIFDVYCVGQSGERFIVEVQKAK 10 B3QT53_CHLT3/11-242 96.6% 20.8% PFTDYGFKRLFGEE-P-NKDLLLDFLNELLK-NEQGTITELTYLKNENLGATELNRKAVFDLYCTNETGERFIVELQKTK 11 B3QW15_CHLT3/11-241 96.1% 20.0% PFTDFGFKKLFGEE-P-NKDLLLDFLNELLS-KEEGRITDLTYLKTEQLGATGLDRKAIFDLYCENERGEKFIVELQKTK 12 C6Y2C7_PEDHD/11-239 96.1% 20.6% PLTDYGFKRLFGNE-P-DKDIMIEFLNALFE-GEK-IVIDIRYSPTEHAGEDVKEKKVLFDLTCTGADGETFIIEMQRAD 13 C6Y2B5_PEDHD/31-262 97.0% 19.2% PLEDLGFKRLFSAE-Q-NKDITITFLNHVLK-GKR-EVVSLEFLKNEYPGETQEEGGVIIDIVCKDQIGAFFLVEMQKSW 14 C6Y3K9_PEDHD/14-245 97.0% 16.7% PFLDVAFKRLFATD-E-SKPILIGFLNELYK-GKK-YITEIQFGKNEYHGEIKEEGGVVFDIVCTDADGSRFIIEVQTGY 15 C6XVA6_PEDHD/25-256 97.0% 18.8% AFVDFSFKRLFATE-E-SKPILIGLLNHLFK-GRK-YITEIEYGKNEFPGEIAQEGGAVFDVYCTDVNGSKFIIEVQRGN 16 D6CWC6_9BACE/7-233 96.6% 19.7% PFTDFGFKFLFGRE-V-EKELLIDFLNDLLV--GEHVITDIRFLNNEQPPEVKTERGLIYDIYCVTDTGERIIVEMQNRE 17 Q2FSM1_METHJ/21-245 95.3% 25.8% PKNDYVFRYLLGEE-G-NEELLTSLISAILG----RRITHATIKNPYILKLYYDTKECILDIKAEIDENILVDIEMQLCN 18 B4SC52_PELPB/6-236 97.9% 25.4% PRVDFAFKKLFGSE-E-NKDLLISLINAIVS--EEDQVVEIELKNPYNLADYRAGKISILDIKAKAENGRWFNVEMQISE 19 A6M1J9_CLOB8/5-233 97.0% 30.1% PKNDFVFKLLFGDE-K-NKDLIIELLNSILK-MPHDELEDIELINTELLREFAEDRKGILDVRAKTKSGEHIDIEIQVLY 20 Q73QP0_TREDE/9-240 97.0% 24.3% LRNDYAFKRVFGVE-E-NKDVLQDLLECILD-IQPEDIAGLELLDKEFHKDSISDKTGVLDVKLRLKNNTIIDIEIQNRW 21 Q73N12_TREDE/9-240 97.0% 23.0% LRNDYAFKRVFGVE-E-NKDVLQDLLECILD-IPPETIAGLELLDKEFHKELLSEKLGILDIKLRLKDGTFVDIEIQNSW 22 Q73K05_TREDE/11-242 97.0% 20.9% LRNDYAFKRIFGTE-E-NTDILQDLLECILD-ILPENIAGLELLDKEFHKEILTEKLGILDIKLRLKDKTIINIEIQNRW 23 Q8XNB3_CLOPE/8-238 96.1% 30.1% PQIDFVFKKIFGTE-K-NKPILINFLNAVIK--PTTPIKDVEIKNNDIDKDFLEDKFSRLDVKATTSNKEHINIEIQVKN 24 Q24PT3_DESHY/7-235 97.9% 27.4% RINDYLFKWVFGRP-E-NKEILLSFLNSVLSPNGQDELADITLAERELDPEHIHDKLSRLDILGKGNDGSIINIEVQIAN 25 Q24RR6_DESHY/15-251 99.1% 31.9% -KIDYAFKLIFGKE-G-NEAILIAFLNAALKLPQERRIEAITIMNPELNKEYQGDKKSILDVRAETSEGMQINIEIQLSN 26 Q73J06_TREDE/10-231 93.1% 15.5% PKTDWVFKLMFSKGEE-GNKALISFLNAFLE-DSYGKINKAEIINTELIRDRPSGETYRLDFLIKTDNGLIIDLEMQQFW 27 Q73K09_TREDE/8-229 93.1% 16.8% PKMDWVFKLMFSKGKK-GNKALISFLNAFLE-DSYGKIKKADILNTELIRETPNGETYHLDFLIKTDTGLIIDLEMQQFW consensus/100% ...Dh.h+hhhs.....tp.hh.thlpthh.......h.th.h............t..hhshhh....t..h.lEhQ... consensus/90% .h.Dhhh+hhhutt...sp.lh.thlpthh.......h.thphhp.....t....t..hhDlhh..tps.hh.lEhQ... consensus/80% .hsDahF+hlFup-...scplLhshlNtlhp..t.t.ltplphhps...tp..tt+.slhDlhs.sppGthh.lEhQ.t. consensus/70% shsDasFKhlFupE.t.scclLlshLNsllp..t.p.lpplphhss-.ht-h.p-+tulhDlhspspsGphh.lEhQht. cov pid 81 . 1 . . . . : . 160 1 C0QWI7_BRAHW/9-241 100.0% 100.0% NQSFVYRSLYYWAKCYVSNLRNNEKYN----DLKQVIVINILD-FNLLKD---ID----KEHSCYVIKELETNH--ILTN 2 C0QWG9_BRAHW/22-253 96.1% 39.8% NEDFIKRALYYWAYNYSSSLNRGSFYD----ELKPTVSINITN-FILTNE----D----KVHSCYVLKELNNNK--ILTD 3 C0R1Y5_BRAHW/6-242 98.3% 32.4% NIDFLKRIYYYISRNIVSEVDEKEPYD----IISEVISINFVN-FNMDFN---DE---GKPHRCFKLIDIENPN--VVLD 4 C0QWD4_BRAHW/7-245 97.9% 33.7% NNNFIKRILYYIAKNIASELKENENYI----NISQMISISFLN-FNLNIG---SETDIKKEHKCFQLSDINNPS--LKLD 5 C0QZF9_BRAHW/13-240 97.0% 38.3% NSRFPERILYYWAANYSKLLKHGERYD----ELTPVISINLLN-FNLDKS----T----NIHSCYMLYEMNNKK--LLTD 6 A6TLA0_ALKMQ/8-243 99.6% 30.8% EVSYRKRSLYYWAKTYAETIGEAEPYE----ELKKTIVINIMD-YDAIHE---SK----KLHTHFKLLEREEHF--TLTE 7 A6L3Y8_BACV8/13-241 97.0% 22.0% QQFFKDRSIYYATYPIREQAIKGEIWN---YELKAVYVIGILN-FALDDV--SSS----GFRHEVKLMDTTTHE--VFFD 8 R7ED70_9BACE/13-240 97.0% 22.1% QQFFKDRSVFYSTFPIREQARRGEWDY----ELKAVYVVGILN-FSFDPS---DT---GYFHHEVKLVDLYTKK--VFYD 9 B3QUJ9_CHLT3/11-238 95.3% 18.8% QNYFKDRSIYYASFPIQEQAKRGN---W-DDKLEPVYTVGILD-FIFDDHK-LDA----ELIHVVALKKSAQRS---FSD 10 B3QT53_CHLT3/11-242 96.6% 20.8% QKFFKDRTIYYSTFPIQEQAKKGSE--W-NFELEKIYTIAILD-FEFDDDKKYPE----KFRYDVKLKELEINE--VFSD 11 B3QW15_CHLT3/11-241 96.1% 20.0% QNCFKDRTIYYASFPIREQAKKNQ---W-DYCLNAVYTVGILD-FVFDEDKSEPE----KYRYDIKLTDVETQK--VFYE 12 C6Y2C7_PEDHD/11-239 96.1% 20.6% QEFFRDRCVFYMSRLISAQLPRGTS--NWDVPLKEVYLIGIME-FQFNNI---NS----NYLHNIALMNRDTGK--VFYK 13 C6Y2B5_PEDHD/31-262 97.0% 19.2% NQNFKERSLFYASRLITEQAPHGNRKEW-AYSLKDVYVIALLEKFTINAG--NKG----KWLHDIALVNTDTGK--VFNE 14 C6Y3K9_PEDHD/14-245 97.0% 16.7% QKYFKERALYYTSRAISEQSPKGKIKGW-AYNISEVYLLAFLENFNLPDT--PRY----EYLQDICLANRHTGK--IFYD 15 C6XVA6_PEDHD/25-256 97.0% 18.8% QEYFKERALFYVSRAISEQAPKGDRKGW-AYKLTEVYLLAFLEDFNLPDS--PKS----EYVQDICLANRHTGI--IFYD 16 D6CWC6_9BACE/7-233 96.6% 19.7% QPYFKDRALFYLSRAITQQAKRGVWNF----QLDAVYGVFFMN-FVMDKD--MPS----KIRTDIVLSDRDTGK--LFNN 17 Q2FSM1_METHJ/21-245 95.3% 25.8% SPELINRILLYWSRLYASQMKAGDGYH----VLKKTISILILDDDPYHTD---------DFHVCSRIINCVQKF--ELTD 18 B4SC52_PELPB/6-236 97.9% 25.4% DYNFDKRAIFYWAKLVTEQLSEGMMYK----ELKKTISINILD-YNFVPD---TT----DVHSCYKIINTATGKDDRLHD 19 A6M1J9_CLOB8/5-233 97.0% 30.1% TYYMAERTLFYWSKMYNGQIKSGYTYD----KLKKCITINIVD-FNCIEI----N----KLHTSFHITEDETNK--KLTD 20 Q73QP0_TREDE/9-240 97.0% 24.3% NSEFVQRTIFYWAKMYTENLKTGEVYT----KLPKCITINIVG-EGFDLN----S----LIHSEYNVVEKHLND--RLSD 21 Q73N12_TREDE/9-240 97.0% 23.0% HFDFPERTLYYWSKMYNENIKQGQDYT----KLPKCITINLIG-KDFDKN----K----RLHNKYLVLEKDTKE--PLVS 22 Q73K05_TREDE/11-242 97.0% 20.9% RGDFPERSVYYWSKMYNESIKQGQDYT----NLPKCITINLIG-KGFNKN----K----RLHNKYFVMEKDTKE--PLFS 23 Q8XNB3_CLOPE/8-238 96.1% 30.1% EYNMIQRTLYYWSKMYSEQIQNRDNYS----KLERTVCINILN-FKYLKN----D----KYHNAYRLKEITSNE--ELTD 24 Q24PT3_DESHY/7-235 97.9% 27.4% QYDIDKRTLYYWAKLYQGQLQKGQRYK----DLSRTITVNVLN-FGFLPD---SQ----KYHSMFSLYEAHSGY--RLNR 25 Q24RR6_DESHY/15-251 99.1% 31.9% QYDMEKRSLYYWAEMYSRQIREGMAYK----ELAKAVTINILD-FNYLKQ---TS----NYHNVFHLYEDEEKF--QLTD 26 Q73J06_TREDE/10-231 93.1% 15.5% KTNYHRRSQMYLMRLASRFLK--TEPK----EDDFLYAISLSV-FGCDVP---------KNAELVRMSES---------S 27 Q73K09_TREDE/8-229 93.1% 16.8% KENYPRRSQMYLLRLASRFLK--LESK----KDDPFYAVSISV-FGCNVP---------KNAKLVKMSEN---------S consensus/100% p..h..R..hY....h.t.................hh.l.h.....h..............h....h.p..........p consensus/90% p..h.pR.hhYhsh.htt.h.tt.........l..hh.lshht.h.h............t.h..h.l.p........h.p consensus/80% p..a.cRslaYhuh.hppphtpsp.......pLptshslslhs.ash..t....t....phtpthhlhphtpt....h.s consensus/70% p..FhcRslaYhu+.hspphppGp.ht....pLptshsIslls.Fshsts....p....ch+pphtlh-hpstp..hhh- cov pid 161 . . . 2 . . . . 240 1 C0QWI7_BRAHW/9-241 100.0% 100.0% HFEMHFLELQKYLSSNSNLKEE-------LDAWFYFLTIKEKIEKMEEIMDILVKKNPIMKEVYDEYNKFADTKDLFENY 2 C0QWG9_BRAHW/22-253 96.1% 39.8% HCQLHFLELPKFNLKNISAIESLDNIHKEFISWVKFFKGED--------MSILMKENTIFEEVEKKCRTFVNNTPVMDKY 3 C0R1Y5_BRAHW/6-242 98.3% 32.4% MVQMHILEFPRFKNILSNSNIEDM-KKKRILSWIEFFTAKDLDKVKEELK----EANYIMSKVINKYERFISNEDEMEVY 4 C0QWD4_BRAHW/7-245 97.9% 33.7% DFQIHFIEIKRFAEILKNASIDDY-NKNKLLSWIDFFTTKDLEKDINKLI----GGNHIMSKVIDKYKRFVADEKEMSAY 5 C0QZF9_BRAHW/13-240 97.0% 38.3% HLQIHIIELKKFKKNILTKDLN---------CWLKIFTSKNLEAS----MSEIVKEKPIMEEVQKKYNNFVKSKLMMMEY 6 A6TLA0_ALKMQ/8-243 99.6% 30.8% DLQIHYLEVPKLAEAKQIEALE------GIELWIAFLKEAGKAGNEEKIERL-KRRSESMSKVIESLETVSADEKLLEAY 7 A6L3Y8_BACV8/13-241 97.0% 22.0% KLTFVYLEMPKFHKTEQELDTL-------FDKWMFVLKNLARLMERPTSL-----QERVFNRLFEAAEIAQFSKENLYAY 8 R7ED70_9BACE/13-240 97.0% 22.1% KLTFVYLEMPKFNKTEDELKTM-------FDKWLFVLRNLSSLLERPRSL-----QNRVFDRLFEAAEIAKFTKTELSEY 9 B3QUJ9_CHLT3/11-238 95.3% 18.8% KLKFIYIELPKFKKTEAELETQ-------FDKWLYVFRHLSQLQKRPTKF-----QEKIFEKLFEAAEIAKFSKNELVAY 10 B3QT53_CHLT3/11-242 96.6% 20.8% KLNFIYLEMPKFNKTVDELETR-------FEKWLYLIKNLHKLDRIPEKL-----KETVFLKLFETAEIAKFSQQEYLDY 11 B3QW15_CHLT3/11-241 96.1% 20.0% KLTFIYLEMPKFNKSVDELETR-------FEKWLYVLKNLARLEEIPEKL-----RERVFEKLFEAAEVARFTQEEMYKY 12 C6Y2C7_PEDHD/11-239 96.1% 20.6% GMGYKFLELPNFDKKESDLVTE-------LDKWFYLLKNLSHLDKIPDFL-----DKRVFQKIFKIAEMSKMTKEERELY 13 C6Y2B5_PEDHD/31-262 97.0% 19.2% RLRFTYIELLSFKKTENQLETD-------LEKWIYALKNLKHLKQAPAAF-----TEPQLLQFCQAARYINLTKEEKNMI 14 C6Y3K9_PEDHD/14-245 97.0% 16.7% KLSFIFIEMLNFVKKPHELHTE-------LDKWLYALKHLTEFKQRPAYL-----SGPEFDQFFALAKYANLTKEERDMY 15 C6XVA6_PEDHD/25-256 97.0% 18.8% KVGFIFIEMLNFVKGSDELYTE-------LDKWLYALKHLTEFKQRPEYL-----SGPEFDQLFTLANYASLTPEERDMY 16 D6CWC6_9BACE/7-233 96.6% 19.7% KFRQIFIELPNFNKEEDECEND-------FERWIYILKHMDTLDRMPFKA-----RKAVFERLEKLASKANMTQEERAQY 17 Q2FSM1_METHJ/21-245 95.3% 25.8% LLEIHILELPKVHKRREQDTND------KLIPWMNFLYAQTREELDMASE-----ANPVIRKATDMLTAMSRDEEERLRY 18 B4SC52_PELPB/6-236 97.9% 25.4% VFELHYIELKKFNKLHHEISST-------LDRWTTFLTTAHQLDREHTPKE--LAVDKNIVKAIAAIDRM-FNEEERQVY 19 A6M1J9_CLOB8/5-233 97.0% 30.1% VLEIHYLELPKLFDNNIPKDES-----EPLVQWMMFLQSRNKEAFEMLAE-----KNEKIKKAYNILEVISKDDNARAAY 20 Q73QP0_TREDE/9-240 97.0% 24.3% ELEIHFLNLAKVKEQDENIESDEK--KKKLYNWLKFIETDDEEVRNMLAQ-----ESPMMRKANSTIELMEMSPKEKWLY 21 Q73N12_TREDE/9-240 97.0% 23.0% KLEIHILNLEKAKLLKEAQCKDNK--TKRLLNWLKFIETDDREVREMLEQ-----ESPMMAKANTAISVMEMSSKDKWLY 22 Q73K05_TREDE/11-242 97.0% 20.9% KLEIHIINLETAKLLEESNYTDIK--TKRLLSWLKFIETDDREVRKMLAQ-----NSKTMKKANAAIEVMEMSPRDKWLY 23 Q8XNB3_CLOPE/8-238 96.1% 30.1% LQEIHFIELPKFNEIGNKENVDVE-KMDALEKWLEFLVEPESNTVRQLEL-----SNEEIKLAKSELYRLSMDSKEREQY 24 Q24PT3_DESHY/7-235 97.9% 27.4% DLEIHFLELSKWKALSVKPKTR-------LDKWLMYLSNTNPQEMEEIAM-----SEPAIRKALTAEEIFLKQDKERYLY 25 Q24RR6_DESHY/15-251 99.1% 31.9% ALEMHFMELPKLLAKWRNREISPW--ENELVRWLLLLEGADNQEILQTLEEI-AMKDPVLHQAMTAWEETSDDPRIREAY 26 Q73J06_TREDE/10-231 93.1% 15.5% IIQYLYVELNELIVYTMKKRLEE---YSLKDFWIRFLANYEEDKKSGMLEEL-CKLEEGIKMAEATLFRVTDEERRMAIE 27 Q73K09_TREDE/8-229 93.1% 16.8% VIQYIYIELNELIGYTIKKSLED---YTLKDFWIRFLTTYEQDKKSGVLKKL-CELEEGIRMAEETILRVTEEERRIARE consensus/100% ..t.hhhph.ph....................Wh.hh...t...............t..h..h.t.......p...h... consensus/90% .hphhhlph.ph.....t...p.......h..Wh.hhtt.t...............p..h..h.t.h.hh..p.p.h..h consensus/80% hhphhalEh.ph.t...p.p.p.......h.pWhhhlpp.pp.............tp..hpph.phhphh..sppth..Y consensus/70% tlphhalEl.+htphppphppc.......h.pWlhhlpshsp.tp..hhh.....pp.hhpchhpthphhphspcch.hY cov pid 241 : ] 257 1 C0QWI7_BRAHW/9-241 100.0% 100.0% AEYEKNYFD-ILALSEE 2 C0QWG9_BRAHW/22-253 96.1% 39.8% KKREVDAYFFDKSIELD 3 C0R1Y5_BRAHW/6-242 98.3% 32.4% NARDAFLYGQKVMLKRE 4 C0QWD4_BRAHW/7-245 97.9% 33.7% NERDTFLYGQAAMLQYE 5 C0QZF9_BRAHW/13-240 97.0% 38.3% EKKEAYLYGNQIMLDEE 6 A6TLA0_ALKMQ/8-243 99.6% 30.8% RAREKARRDEISKLAYA 7 A6L3Y8_BACV8/13-241 97.0% 22.0% EESLKVYRDWNNVINTA 8 R7ED70_9BACE/13-240 97.0% 22.1% WDSLKNFRDWYSVISTA 9 B3QUJ9_CHLT3/11-238 95.3% 18.8% EESLKYYRDMKNVVDTS 10 B3QT53_CHLT3/11-242 96.6% 20.8% ENSLKYYRDLKNSLDTA 11 B3QW15_CHLT3/11-241 96.1% 20.0% EDSLKYYRDLKNSIDTA 12 C6Y2C7_PEDHD/11-239 96.1% 20.6% DSDVKAKSDWNAGIRYA 13 C6Y2B5_PEDHD/31-262 97.0% 19.2% SAKTKARWDYYYAIDGA 14 C6Y3K9_PEDHD/14-245 97.0% 16.7% NTSLKQKWDSKNVLDYA 15 C6XVA6_PEDHD/25-256 97.0% 18.8% NSSLKRKWDNKNVLDYA 16 D6CWC6_9BACE/7-233 96.6% 19.7% EEEWKVYNDYFNTLDF- 17 Q2FSM1_METHJ/21-245 95.3% 25.8% EAREEFLFDQQYGLQAA 18 B4SC52_PELPB/6-236 97.9% 25.4% EVRKQSLVDAESKIASA 19 A6M1J9_CLOB8/5-233 97.0% 30.1% EAREAELHDQMTRLKSA 20 Q73QP0_TREDE/9-240 97.0% 24.3% ENRMKYEHDKASWKHVG 21 Q73N12_TREDE/9-240 97.0% 23.0% DSRMKYEHDRASCISEG 22 Q73K05_TREDE/11-242 97.0% 20.9% ESRMKYQHDMASEKHEG 23 Q8XNB3_CLOPE/8-238 96.1% 30.1% NMREKAIYDRISALES- 24 Q24PT3_DESHY/7-235 97.9% 27.4% EMREKALLDHVSAIEGA 25 Q24RR6_DESHY/15-251 99.1% 31.9% FDRRKAVLDEKAAIREA 26 Q73J06_TREDE/10-231 93.1% 15.5% LSDEKY----RMYVEDE 27 Q73K09_TREDE/8-229 93.1% 16.8% LSREKY----QMLLEAE consensus/100% .............ht.. consensus/90% ..p.t........lp.t consensus/80% ptp.p.hhs...hlp.t consensus/70% ppc.KhhhD.tshlcts