cov pid 1 [ . . . . : . . . 80 1 Q7D9V6-1167-1393 100.0% 100.0% ICIPTLTVLSDQREYRDIANAMTG---RHS-----VYSLTLPGFD-SSD-----ALPQNADMIVETVSNAIIDVVGGSCR 2 O86335-1167-1393 100.0% 100.0% ICIPTLTVLSDQREYRDIANAMTG---RHS-----VYSLTLPGFD-SSD-----ALPQNADMIVETVSNAIIDVVGGSCR 3 UPI00005EE3CD-735-961 100.0% 100.0% ICIPTLTVLSDQREYRDIANAMTG---RHS-----VYSLTLPGFD-SSD-----ALPQNADMIVETVSNAIIDVVGGSCR 4 Q7U224-711-937 100.0% 99.6% ICIPTLTVLSDQREYRDIANAMTG---RHS-----VYSLTLPGFD-SSD-----ALPQNADMIVETVSNAIIDVVGGSCR 5 Q6D9L2-1894-2101 91.2% 22.8% VCLNSFIPAAANLTYQRLSSALSD---RYS-----ILTVPLPGY--HGE-----PLPGTDYAAAAALATAIERGTSGR-D 6 Q9Z3T8-1852-2058 91.2% 23.3% ICLNSFLPARANLTYQRLSRELKG---HYD-----MATLPLPGYD-NG------PLPASAEAVAVALAHAVEACAAGR-P 7 Q87W69-1852-2058 91.2% 23.3% ICLNSFLPARANLTYQRLGRELKG---HYD-----MATLPLPGYD-NG------PLPASAEAVAVALAHAVEACAAGR-P 8 Q6V1N7-1587-1799 93.8% 25.6% ISFPPFAPVEQTLQFVRLASFFRD---RRD-----LSMVTVPGFL-KGE-----PLAESVDVLIDVLAESAIHCAAGS-P 9 Q0ILD0-3374-3588 94.3% 28.9% ICFPSQSVWASNQELVGMAVPLRG---VRD-----LWSLMLPGFV-TGQ-----PVAADVDAAAEYAVRLIEELVQDE-P 10 Q93HJ1-3394-3608 94.3% 27.2% IGFPSQSVWASNQELVSMATPLRG---TRD-----VWSLMLPGFV-TGQ-----PVAADVDAAAEYALRLIEELVDGE-P 11 O30482-1727-1933 90.7% 23.2% VCVPAVTPAATPHEYDALGRRLDG---VLA-----SAVLPYPGFG-AGQ-----AMPEDRRTLVGMHARSVLDHVGDE-P 12 Q0RTS6-2058-2276 95.6% 24.0% ICFPAMSAISGPHEYARLGTLLRG---ERD-----VFVLPSPGYD-END-----HVPIDEPTYIEMHVREVTRLVGDE-P 13 Q53840-8598-8807 91.6% 24.5% ICFPAFVVPSAPIQYARFASHLRD---RRD-----IWFIPHPGYR-HKT-----PLTRSLDELVSSHARTTLACARNS-P 14 Q8GBX4-3375-3574 87.2% 24.0% VCLPSFYPPVSV--YTRFAAALRG---ERD-----VWLLPPPGYA-RGE-----HLAPDMPALIEHQAAAIVRSTAGS-P 15 Q93NX7-1818-2026 91.6% 20.2% IFVSAPGATGGVHQYARIAAHFRG---KRH-----VSAIPLMGFA-PGE-----LLPATSEAAARIVAESVLMASDGE-P 16 Q9L4X1-1850-2058 91.6% 20.2% IFVSAPGATGGVHQYARIAAHFRG---SRH-----VSALPLMGFA-PGE-----LLPATSEAAARIVAESVLMASEGE-P 17 Q6W5P8-1816-2031 93.8% 22.6% VCVSAPTANGGVHQYATLSGHFRG---RRD-----VTALPLIGFN-TGE-----ALPAHAEAAARIIADCTLQAADGK-P 18 Q9EWA3-1805-2018 93.8% 25.4% ICVSTPTANGGVHEYARLAASFRG---ERH-----VSALPLVGFA-TGE-----RLPATAETAVRVIAESALRASDGN-P 19 Q93H83-3124-3333 92.5% 19.8% MCFSPYVVPAGAHQYARFAAPFRD---RLD-----VWALVHPGYE-KGE-----PVPSDPDVVFRLHAQTVRECAGGK-P 20 Q6JHN6-7275-7484 92.5% 25.6% VCFTPIVPLTGANLYYPLAAALPG---GLT-----VSALASPGFV-EGE-----KLPVDASVLVSLQAETVAEHVGEA-P 21 Q70KH4-1989-2197 92.1% 23.3% ICFPTFAGGSGAHQYARLAAVSGG---ERD-----IWVLPAPGFT-WQE-----SLPASVETLARLQADSVEACADGG-P 22 Q3WH62-1732-1948 94.7% 24.5% VCVPSMVAPSGPHSFARLALHLHG---QRD-----VYGLSLPGFG-EGE-----KLPASSVLVVEILTDLVAAHFIGV-P 23 Q3VZI2-197-411 94.3% 25.0% VCLPSMVAPSGPHTFARLALHLHG---RRA-----VHALAHPGFG-DGE-----LLPATADLVVDLHAETLAAHFPDT-P 24 Q0RK68-1934-2150 94.7% 28.4% VCLPSMVAPSGPHNFARIALHLHG---LRD-----VFALPHPGFG-DGE-----LLPANAELVVEMHADTVARAFPVT-P 25 Q2J8Q4-1847-2063 94.7% 27.5% VCLPSMVAPSGPHNFARLALHLHG---RRD-----VYALPHPGFG-DGE-----LLPATADLVVDLHAETIARAFDEI-P 26 Q9S0R3-4672-4873 89.0% 24.2% ICLPTVAAVSSVYQYSRFAAGLNG---HRD-----VWYVPAPGFL-EGE-----PLPSGIGAVTRMFADAIVRFTDGA-P 27 Q9ALM2-5365-5577 93.0% 27.1% VCMPALIGMPPAQQYARIAAGFRD---VRD-----VSVIPMPGFI-AGE-----PLPSAIEVAVRTQAEAVLQEFAGG-S 28 Q76KZ3-3579-3804 95.2% 24.5% FCFASPMAMGGTHQYARLAAHFRG---VRE-----VSALPMPGFA-TGD-----LLPATAEAVVEVFGRSLLRAAGDE-P 29 Q0L663-1794-2002 91.6% 24.6% VCLPSPMALGGDQQYARFTAEFGG---TRD-----VWTLPVPGFG-RDE-----SLPASSDAAVRVFAEMVRPIAEQG-P 30 Q83WE6-1853-2066 94.3% 25.1% ACVPAPMGMGGAHQYARFAERFRA---VRP-----VLAVPMPGFS-AKE-----PLPASPEAAVEVLAGQLRPLAESG-P 31 O30768-1644-1856 93.0% 28.4% YCCAGTAATSNPREYAHFADALRG---RRD-----VTVLPLPGFGDPAE-----PLPASLDALLADRADALLEHCGGE-P 32 O33958-1607-1819 92.5% 24.8% VGCAGTAVASGPVEFTAFAGALADLPAAAP-----MAALPQPGFL-PGE-----RVPATPEALFEAQAEALLRYAAGR-P 33 Q5SFB0-1137-1347 93.0% 26.0% ICCAGTAVASGPEEFTALAAALGD---RLT-----VSALRQPGFR-ANE-----LLPGSLDGLLDAQADAVLRHTGDR-P 34 Q331Q2-1144-1354 93.0% 25.1% ICCAGTAVASGPEEFTALAAALDN---RLT-----VSALRQPGFR-ADE-----LLPGSLDGLLDAQADAVLRHTGDR-P 35 A0ACI0-6119-6328 92.1% 23.7% VCVSGLTAGGGPQEFVRLAAPLRG---ARR-----VAAVPVLGYG-RGE-----LLPATPEVALDWQARGILAHAQDT-P 36 Q3S868-1834-2045 93.4% 27.3% VCFASVVALGGAHQYSRLASAFEG---RYG-----VSALDAPGFA-PDE-----PLPADMSSLLDFQTEVLLRRLGDR-P 37 Q52V49-3657-3868 93.4% 27.3% VCFSSILSISGPHQYARFASAFRG---RRD-----VHALGAPGFL-RGE-----QLPSATDAVIEAQAEAVLRHADGA-P 38 Q9ZGI2-1120-1335 93.0% 25.9% VGCTGTAANGGPHEFLRLSTSFQE---ERD-----FLAVPLPGYG-TGTGTGTALLPADLDTALDAQARAILRAAGDA-P 39 UPI0000E11D92-93-308 93.0% 25.9% VGCTGTAANGGPHEFLRLSTSFQE---ERD-----FLAVPLPGYG-TGTGTGTALLPADLDTALDAQARAILRAAGDA-P 40 UPI0000E11D94-93-308 93.0% 25.4% VGCTGTAANGGPHEFLRLSTSFQE---ERD-----FLAVPLPGYG-TGTGTGTALLPADLDTALDAQARAILRAAGDA-P 41 Q07017-3306-3514 92.1% 27.8% ICCSGTAPVGGPHEFARLASFFRG---TRA-----VSALPLPGYL-PGE-----QLPADLDAVLAAQAEAVEKQTGGA-P 42 Q5Y9G6-2985-3192 91.6% 28.2% VCCAGTAAPSGPHEFARLAAALDG---SWS-----VLGLPQPGYL-AGE-----PLPASMEALAAAQAATVLRAVAAR-P 43 Q83X71-3084-3291 91.6% 25.1% ICVAGTAPVAGPHEFLRLAAAFEG---SMP-----VSALPQPGYE-PGE-----QLPASLAAVLGVQADAVLKSADG--P 44 Q9F828-2989-3196 91.6% 26.0% ICCAGTAALSGPHEFARLASALRG---TVP-----VRALAQPGYE-AGE-----PVPASMEAVLGVQADAVLAAQGDT-P 45 Q03133-2960-3167 91.6% 26.0% ICCAGTAAISGPHEFTRLAGALRG---IAP-----VRAVPQPGYE-EGE-----PLPSSMAAVAAVQADAVIRTQGDK-P 46 Q5UNP4-2959-3166 91.6% 26.0% ICCAGTAAISGPHEFTRLAGALRG---IAP-----VRAVPQPGYE-EGE-----PLPSSMAAVAAVQADAVIRTQGDK-P 47 UPI000011213B-71-278 91.6% 26.0% ICCAGTAAISGPHEFTRLAGALRG---IAP-----VRAVPQPGYE-EGE-----PLPSSMAAVAAVQADAVIRTQGDK-P 48 Q0PCZ8-1889-2098 92.5% 26.4% ICFPAFGAMSGPHEYARFAAHFAG---DRD-----VVALTYPGFV-PGT-----AVPASVDDLAGVLATVIAENLTDR-P 49 Q70HZ7-1524-1730 90.7% 26.8% FCIPSHLGKADPHKFLRFAAALRG---RRD-----VFVLRQPGFV-PGQ-----PLPAGLDVLLDTHARAMAGH--DR-P 50 Q0QMP7-1709-1908 85.9% 22.8% LALPSALAASGPHQFARLAAALRG---DGDGDGYRVTALPLPGFR-AGE-----PLPANLPALLDALAVAAARAAGRG-P 51 Q5VKR3-1597-1797 88.5% 28.6% VCLPSVLATSGAHQYARFATALRG---RRS-----VCSLTLPGFA-AGE-----PLPANLDALVDAAAHAVRARIGDA-P 52 Q0QMN4-1626-1831 90.7% 27.3% VCLPTVLATSGPHQYARFAAALRG---RRA-----VSALTLPGYD-DGA-----PLPADRSAAVAAVTEQVRRTAGDR-P consensus/100% h.hss..s......h..hs....t....h.........l...Ga...t.......hs.t...hh......h......... consensus/90% lshss.hs.sss.pa.thut.hts....hs.....h.sls.PGa...sp......lPts.thhhth.sp.h.th.tst.s consensus/80% lChsshhs.uusppatchAsthps...ths.....l.sls.PGa..tup......LPushpshhth.upslhthhsst.P consensus/70% lChsuhsshuuscpasRlAsthcG...pts.....VhuLshPGat.tG-......LPush-shhph.Acslhptssst.P cov pid 81 . 1 . . . . : . 160 1 Q7D9V6-1167-1393 100.0% 100.0% FVLSGYSSGGVLAYALCSHLSVKHQRNPLGVALIDTYLPSQIANPSMNEGFSPNDTGKGLSREVIRVARML-NRL-TATR 2 O86335-1167-1393 100.0% 100.0% FVLSGYSSGGVLAYALCSHLSVKHQRNPLGVALIDTYLPSQIANPSMNEGFSPNDTGKGLSREVIRVARML-NRL-TATR 3 UPI00005EE3CD-735-961 100.0% 100.0% FVLSGYSSGGVLAYALCSHLSVKHQRNPLGVALIDTYLPSQIANPSMNEGFSPNDTGKGLSREVIRVARML-NRL-TATR 4 Q7U224-711-937 100.0% 99.6% FVLSGYSSGGVLAYALCSHLSVKHQRNPLGVALIDTYLPSQIANPSMNEGFSPNDTGKGLSREVIRVARML-NRL-TATR 5 Q6D9L2-1894-2101 91.2% 22.8% FTLVGFSTGGLVAHAAAHQLE-ARGRQPKAVVLIDSFPPSAMNE----ATMGD-----VLRTWFAAKGEFW--SD-EDTS 6 Q9Z3T8-1852-2058 91.2% 23.3% FTLLGFSTGGLVAYAVAELLQ-QRGIHPAALCLIDTYPPAAMRS----AVLKE-----VLSDWLESRSDFW--ST-DDDG 7 Q87W69-1852-2058 91.2% 23.3% FTLLGFSTGGLVAYAVAELLQ-QRGIHPAALCLIDTYPPAAMRS----AVLKE-----VLSDWLESRSDFW--ST-DDDG 8 Q6V1N7-1587-1799 93.8% 25.6% FALLGYSSSGWLAHCVTARME-ALGTPAQGLVLLDTYLPDGMS-----VALRQ-----AMTYEVNERRSRF-TKL-NFTT 9 Q0ILD0-3374-3588 94.3% 28.9% FVLAGRSSGGRIAHEVAVRLE-GRGRAPKGLVLIDSYMAGYEAT----SYITP-----VMESKALELEKDF-GQM-TGTR 10 Q93HJ1-3394-3608 94.3% 27.2% FVLAGRSSGGRIAHEVTSRLE-DRGLAPRGLVLIDSYMAGYDAT----SYIVP-----VMESKAVELEKDF-GQM-TGTR 11 O30482-1727-1933 90.7% 23.2% YVLVGRSLGGTVAHAVTSELE-RLGRGPRGLVLIDTYPLDASRA----QEWLL-----GLPARAAVEE----GAP-DDAA 12 Q0RTS6-2058-2276 95.6% 24.0% FVLVGRSMGGVVAHAVAAELE-NAGIAPSGLVLVDSYPPESAVREGMADWWLT-----AMITGMLDRVDRYQMVW-SDAS 13 Q53840-8598-8807 91.6% 24.5% FVLFGHSSGGNIAHMVAEHLE-SIGHGPAGVVLLDSYDYASPAV----EA--------GLKIFHVEQLQTW-GA--SDAG 14 Q8GBX4-3375-3574 87.2% 24.0% FAIVAYSSSGWLAYATASCLE-SKGSSPRALVLLDHVDQSIPR---------------ELGHQIWREWVDFPVPARDDVE 15 Q93NX7-1818-2026 91.6% 20.2% FVMVGHSTGGSLAYLAAGVLEDTWGVKPEAVVLLDTASIRYNPSE---GNNLD-----QTTRFYLADIDSPSVTL-NSAR 16 Q9L4X1-1850-2058 91.6% 20.2% FVMVGHSTGGSLAYLAAGVLEDTWDVRPEAVVLLDTASIRYNPGE---GNDLD-----RTTRFYLADIDSPSVTL-NSAR 17 Q6W5P8-1816-2031 93.8% 22.6% FVLVGHSSGGSLAYAAAGVLEHTWGIRPEAVVLLDTLSIQHKSDE---GVDYN-----GMMKFNFTAVDDSPVRL-TNSR 18 Q9EWA3-1805-2018 93.8% 25.4% FVLVGHSSAGAFAYLAAALLENTWGIRPEAVVLLDTLSLRHEQNE---SIDYA-----GLMRRHFMVDEVSPVRM-TNSR 19 Q93H83-3124-3333 92.5% 19.8% AVLLGYSSGGWIAHGVAAHLE-AMGERPAAVVMVDSFSREVPFD----HQVLN-----AMAQAHSQRLD-F-MRS-GGEQ 20 Q6JHN6-7275-7484 92.5% 25.6% FVLAGLSSGGIVAHTTAKRLA-DCGKPPRAVILFDTYAMHDVSV----LETGP-----HFMTAMFERAAGV-VPI-DSTR 21 Q70KH4-1989-2197 92.1% 23.3% VVLLGYSAGGWIAQATATALQ-ERGIAPAAVVLLDSHRPDSAML----PHLHA-----HIDGAREDVLWTA-GTG-DDAY 22 Q3WH62-1732-1948 94.7% 24.5% IAIAGYSSGGWLAHAVAAGLE-ERGIHPKAVLLLDTWLPGDRIP----AEEIQ-----EELRGIAVNDQAF-ALM-TEAQ 23 Q3VZI2-197-411 94.3% 25.0% VALAGYSSGGWLAHAVAARLE-ARGIRPSAVVLLDTWLPGDRIP----EADIA-----EELRGIAVNDQAF-ALM-TESQ 24 Q0RK68-1934-2150 94.7% 28.4% VVLAGYSSGGWLAHAIASALE-DRGVHPAAVALLDTWLPTDRIP----EEDIH-----EELRGIAVNDQAF-ALM-TEAQ 25 Q2J8Q4-1847-2063 94.7% 27.5% LVLAGYSSGGWLAHAIAARLE-TRGIHPRAVVLLDTWLPGDRIP----EGDIQ-----EELRGVALNDQAF-ALM-TEAQ 26 Q9S0R3-4672-4873 89.0% 24.2% FALAGHSAGGWFVYAVTSHLE-RLGVRPEAVVTMDAYLPDDGI-----APVAS-----ALTSEIFDRVTQF-VDV-DYTR 27 Q9ALM2-5365-5577 93.0% 27.1% FVLVGHSSGGWLAHEVAGELE-RRGVVPAGVVLLDTYIPGEIT-----PRFSV-----AMAHRTYEKLATF-TDM-QDVG 28 Q76KZ3-3579-3804 95.2% 24.5% FVLLGYSAGGVFAHAVAAWLE-SEGCAPAAVVLLDSYRADGGTSMDG-DFWVS------MVEGLFSREEVF-GRF-TSAR 29 Q0L663-1794-2002 91.6% 24.6% YVIVGYSSGGLFAHATAGELE-RQGHGPTGVVLLDTYLTTGSTT----ATFFT-----HMLDSLLDREATF-GEF-SSAR 30 Q83WE6-1853-2066 94.3% 25.1% LVLVGYSSGGVFANAAAHRLE-QLGCRVAGLVLLDTYQPDTTAI----ANFIS-----PMLDGLFEREGSF-GPF-TTAR 31 O30768-1644-1856 93.0% 28.4% FALAGHSAGANVAYALAAYLE-SRGSGPAAVVLMDMYFPDDPGAM---GVWRD-----DLLRWSLERS--P-VPL-AEHR 32 O33958-1607-1819 92.5% 24.8% FVLLGHSAGANMAHALTRHLE-ANGGGPAGLVLMDIYTPADPGAM---GVWRN-----DMFQWVWRRS--D-IPP-DDHR 33 Q5SFB0-1137-1347 93.0% 26.0% YALLGHSAGGALAHALACRLE-ELGAGPAALVLADVYLPSSPGAM---GVWRN-----EMLDWVMRRS--V-VSI-DDAR 34 Q331Q2-1144-1354 93.0% 25.1% YALLGHSAGGALAHALTCRLE-ERGAGPTALILADVYLPSSPGAM---GVWRN-----EMLDWVMQRS--V-VSI-DDSR 35 A0ACI0-6119-6328 92.1% 23.7% VVLFGHSGGAILAHRLAVRLA-DLGAPPAGLVLADVYRLDDPLM----ADWSA-----ELSEGVFDRAEQF-VPM-DDSR 36 Q3S868-1834-2045 93.4% 27.3% KVLLGSSSGGTLAHAAAARLE-ALGAGPAAVVLLDTYLSGDEAM----TQFDD-----VLVSGMFEREDRA-APM-DGTR 37 Q52V49-3657-3868 93.4% 27.3% FVLLGHSSGGMLAHAVAGRLE-SEGVFPQALVMIDIYSHDDDAI----IGIQP-----GLSEGMDERQDTY-VPV-DDNR 38 Q9ZGI2-1120-1335 93.0% 25.9% VVLLGHSGGALLAHELAFRLERAHGAPPAGIVLVDPYPPGHQEPI---EVWSR-----QLGEGLFAGE--L-EPM-SDAR 39 UPI0000E11D92-93-308 93.0% 25.9% VVLLGHSGGALLAHELAFRLERAHGAPPAGIVLVDPYPPGHQEPI---EVWSR-----QLGEGLFAGE--L-EPM-SDAR 40 UPI0000E11D94-93-308 93.0% 25.4% VVLLGHAGGALLAHELAFRLERAHGAPPAGIVLVDPYPPGHQEPI---EVWSR-----QLGEGLFAGE--L-EPM-SDAR 41 Q07017-3306-3514 92.1% 27.8% FVLVGYSAGGLMAHALACHLA-GRGTPPSGEVLVDVYPPGRQEPV---FGWQK-----ELTEGMFAQD--F-VPM-DDTR 42 Q5Y9G6-2985-3192 91.6% 28.2% VVLVGHSAGGLMSHALATALT-QQGHRPDGVVLLDSYPPGRQDAV---EGWID-----VLTRRLLDLE--T-VPL-DDTR 43 Q83X71-3084-3291 91.6% 25.1% FVLVGHSAGALMAHALGAELA-DRGRPPHGIVLIDVYPPGRQQAV---QGWLA-----ELTDTMFGRE--G-VRV-DDTR 44 Q9F828-2989-3196 91.6% 26.0% FVLVGHSAGALMAYALATELA-DRGHPPRGVVLLDVYPPGHQEAV---HAWLG-----ELTAALFDHE--T-VRM-DDTR 45 Q03133-2960-3167 91.6% 26.0% FVVAGHSAGALMAYALATELL-DRGHPPRGVVLIDVYPPGHQDAM---NAWLE-----ELTATLFDRE--T-VRM-DDTR 46 Q5UNP4-2959-3166 91.6% 26.0% FVVAGHSAGALMAYALATELL-DRGHPPRGVVLIDVYPPGHQDAM---NAWLE-----ELTATLFDRE--T-VRM-DDTR 47 UPI000011213B-71-278 91.6% 26.0% FVVAGHSAGALMAYALATELL-DRGHPPRGVVLIDVYPPGHQDAM---NAWLE-----ELTATLFDRE--T-VRM-DDTR 48 Q0PCZ8-1889-2098 92.5% 26.4% FALLGHSSGGMVAQAVAERLE-AVGVVPAAVVPMDVYLPEQGTI----ENIAA-----SMMDNFLSRDGGA-VPI-TGQS 49 Q70HZ7-1524-1730 90.7% 26.8% VLL-GYSAGGLAAQALAARLA-ELGRPPAAVVLVDTYAPDETEVM---ARIQG-----AMEQGQRDRDGRTGAAF-GEAW 50 Q0QMP7-1709-1908 85.9% 22.8% FAFVGYSSGGLLAHALAARLG------AAAVVLLDSRPLTDYT-----PADHP-----ELLDGVAARL----DVV-DDTR 51 Q5VKR3-1597-1797 88.5% 28.6% AALVGYSSGGLLAHPVAAALE-RDGARPAAIVLIDTFPPG--------SGLTP-----AVLDGMFARLAGL-DAL-NDAR 52 Q0QMN4-1626-1831 90.7% 27.3% VVLVGYSSGGLLANGVAARLA-AHAHPAHALVLLDTFVFGPEL-----ITDGA-----PLFQQVFTRLDEA-GGA-TDAR consensus/100% hhh.u.u.uu.hs..hs..h.......s.u.h.hD.h..t....................................t... consensus/90% hslhGhSsGu.hAathst.Lt.t.sh.PtulsLhDsh..t...................h.t.h..........h.stst consensus/80% hsLhGaSuGuhhAathuttLt.thGh.PtulVLlDsa..st.......t.........th.phhhtt...h.s.h.sssp consensus/70% hVLhGaSuGGhlAaulAscLp.phGh.PtulVLlDsY.ssp.ts....tshht.....thhpthhtpt..h.s.h.sssp cov pid 161 . . . 2 . . . . 240 1 Q7D9V6-1167-1393 100.0% 100.0% LTAAATYAAIFQA--WEPGRSMAPVLNIVAKDRIA----------TVENLRE-ERINRWRTAAA-EAAYSVAEVPGDHFG 2 O86335-1167-1393 100.0% 100.0% LTAAATYAAIFQA--WEPGRSMAPVLNIVAKDRIA----------TVENLRE-ERINRWRTAAA-EAAYSVAEVPGDHFG 3 UPI00005EE3CD-735-961 100.0% 100.0% LTAAATYAAIFQA--WEPGRSMAPVLNIVAKDRIA----------TVENLRE-ERINRWRTAAA-EAAYSVAEVPGDHFG 4 Q7U224-711-937 100.0% 99.6% LTAAATYAAIFQA--WEPGRSMAPVLNIVAKDRIA----------TVENLRE-ERINRWRTAAA-EAAYSVAEVPGDHFG 5 Q6D9L2-1894-2101 91.2% 22.8% VMAMAWYLELFGRQ-WTPSHLKTPTLLLQAKDYPA----------------S-AQPERWANEWP-NL-VKSIITPGSHFE 6 Q9Z3T8-1852-2058 91.2% 23.3% LSAMAYYLELFGR--WSPLPLEAPVLLLQAEQASA----------------A-GASDTWPQLWP-RL-TQVVKTSGRHFA 7 Q87W69-1852-2058 91.2% 23.3% LSAMAYYLELFGR--WSPLPLEAPVLLLQAEQASA----------------A-GASDTWPQLWP-RL-TQVVKTSGRHFA 8 Q6V1N7-1587-1799 93.8% 25.6% ITALGTYRRMFRG--WAPQPVSTPTLFIRPEECIP-----------GDPGLP-PLTGEWRTHWP-LP-HTDATVPGDHCT 9 Q0ILD0-3374-3588 94.3% 28.9% LTAMAAYFAMFEA--WQPEETSVPTLLVRASERYG-----------IEPGQEQPPAEEWQSAWP-LP-HDAIDVPGNHYS 10 Q93HJ1-3394-3608 94.3% 27.2% LTAMAAYFGMFEH--WQPKEIATPTLLVRASECYG-----------IEPGEVQPPAEQWQAAWP-LP-HEAIDVPGNHYT 11 O30482-1727-1933 90.7% 23.2% LLAMGAYLRAFAD--WTRYAVTTPPLFLRPGRPTP----------------AMPRKDGWQATWP-LP-HDLIEVAGDHFT 12 Q0RTS6-2058-2276 95.6% 24.0% LTTMGAYVRVFNG--WQAKPVAAPTLLIRAADPLR------------RTIIDPADPDGWQAYWT-TP-HTTVDVPGEHFS 13 Q53840-8598-8807 91.6% 24.5% LTAEAWYYEHIGLETWKPRQLAAPTLHVRATEPMK-----------QFVGSE-GAPAEWRASWK-LP-HVAIDAPGDHAT 14 Q8GBX4-3375-3574 87.2% 24.0% MSALGHYVKLPQA--ETPAQIAAPILLVRPATLSA--------------------TDVWPPHWR-AP-EAVVEVPGSHST 15 Q93NX7-1818-2026 91.6% 20.2% MSAMAHWFMAMTD--IDAPATTAPTLLLRATQANN---------------------GFMLDTSA-VPADVVRDIEADHLS 16 Q9L4X1-1850-2058 91.6% 20.2% MSAMAHWFMAMTD--IQAPAPTAPTLLVRAARALD---------------------GFRLDTSS-VPADEVRDIDADHLS 17 Q6W5P8-1816-2031 93.8% 22.6% LSAMGRWMVLLNA--LDVHPTTVPVLEIKCTRALI---------------EGVPAPDPERLHLPVVPDAEVRPLDSDHLS 18 Q9EWA3-1805-2018 93.8% 25.4% LSAMARWMGMLNQ--LEVRHTTVPVLIIRATKETF--------------GIG-TDTGIYGEDHG-SP-VDVRSVDADHFS 19 Q93H83-3124-3333 92.5% 19.8% LTAMGRYMRLFDD--WAAPQIAAPTLLVRASEPML--------------AGA-GDGDGRAAPPE-HV-DTIVEVTGNHYS 20 Q6JHN6-7275-7484 92.5% 25.6% LSAYEWTCGLFGH--WDPEPMPVPTLLIRASEPMS---------------PD-LTGKNWRTNLD-GV-STIVDVPGNHYS 21 Q70KH4-1989-2197 92.1% 23.3% LTAMAHYAHLFHT--WTPKETGTPTLLVRASDRPF----------------D-EAPTDWQPHWP-LP-HTAVDTAGTHFS 22 Q3WH62-1732-1948 94.7% 24.5% VTAQGAYLTLFEK--WKPNPVYAPIVLVRAEERMP--------QLSPDDQST-IEEHGWTTDWE-ID-HLTLDVSGNHQT 23 Q3VZI2-197-411 94.3% 25.0% VTAQGAYLDLFEG--WKPTSVRAPIVLVRAVQRMP-----------GQRADPAGPVTGWADEWD-LA-FDTRDTAGDHQS 24 Q0RK68-1934-2150 94.7% 28.4% ITAQGAYLDLFEH--WRPRAVAAPVMLLRAAERMP--------RGTVAEDIT-GHGQAWTTDWS-MD-HDSFDVAGDHQS 25 Q2J8Q4-1847-2063 94.7% 27.5% VTAQGAYLDLFEG--WRPTAVNAPVVLVRAMERMP--------QQAVAENPD-GEGQAWVTDWV-ME-HERLDAAGNHQT 26 Q9S0R3-4672-4873 89.0% 24.2% LVAMGGYFRIFSG--WSPPDITTPALFLRGRD-----------------------GEQMPPPWG-VP-HTVLDIQGNHFT 27 Q9ALM2-5365-5577 93.0% 27.1% ITAMGGYFRMFTE--WTPTPIGAPTLFVRTEDCVA--------DPEGRPWTD----DSWRPGWT-LA-DATVQVPGDHFS 28 Q76KZ3-3579-3804 95.2% 24.5% LSAMGRYARLVGE--VKTGEVKAPVLFVRPERSLSASADAGGVGGGDAGAAA--ATDDWRASWD-TA-ETVLEVAGDHFD 29 Q0L663-1794-2002 91.6% 24.6% LSAMGRYIRLLES--CPIDSIGTPVLFVRPQESIV-----------------AGDDDGWRATWE-TP-HTLREVPGNHFT 30 Q83WE6-1853-2066 94.3% 25.1% LTGMARYARLLDR--CAVGEPDVPVLFVRPGKLFV-----------LDGQPQ-PDDDTWRASWR-RM-DTVREVPGNHFT 31 O30768-1644-1856 93.0% 28.4% LTAMAGYHRLLLG--SHFTALRAPVLLARASEPLR-------------EWSGDDGPDGWRSRVP-GV-TSVTDVPGNHFT 32 O33958-1607-1819 92.5% 24.8% LTAMGAYHRLLLD--WSPTPVRAPVLHLRAAEPMG-------------DWPP--GDTGWQSHWD-GA-HTTAGIPGNHFT 33 Q5SFB0-1137-1347 93.0% 26.0% LTAMGAYNQMLLE--WTPRPTKAPVLFLRATEPVR-------------PWSG--EPESWRAHWD-GGDHTAVDVPGTHLT 34 Q331Q2-1144-1354 93.0% 25.1% LTAMGAYNRMLLE--WVPRPTKAPVLFLRATEPVG-------------QWSG--EPESWRARWD-GGDHTAVDVPGTHLT 35 A0ACI0-6119-6328 92.1% 23.7% LTAMTWYGGLFWE--IPRPDTRVPTLLLRASEPLR----------------EPADGRDWRSSWK-AA-RDIVDVPGNHFT 36 Q3S868-1834-2045 93.4% 27.3% LTAMGRYFQLLDD--WVPPPVEAPVLLVRASSPLA-------------EPAP-DSDIDWRASWP-SA-HSVLDVPGNHWS 37 Q52V49-3657-3868 93.4% 27.3% LLAMGAYFRLFGG--WKPEVVKTPTLLVRAGERFF-------------DWTR-STDGDWRSYWD-LD-HTALDVPGNHFT 38 Q9ZGI2-1120-1335 93.0% 25.9% LLAMGRYARFLAG--PRPGRSSAPVLLVRASEPLG-------------DWQE--ERGDWRAHWD-LP-HTVADVPGDHFT 39 UPI0000E11D92-93-308 93.0% 25.9% LLAMGRYARFLAG--PRPGRSSAPVLLVRASEPLG-------------DWQE--ERGDWRAHWD-LP-HTVADVPGDHFT 40 UPI0000E11D94-93-308 93.0% 25.4% LLAMGRYARFLAG--PRPGRSSAPVLLVRASEPLG-------------DWQE--ERGDWRAHWD-LP-HTVADVPGDHFT 41 Q07017-3306-3514 92.1% 27.8% LTALGTYDRLMGE--WRPAPSGLPTLLIRATEPMA-------------EWTG---AIDWRASWE-YD-HTAVDMPGNHFT 42 Q5Y9G6-2985-3192 91.6% 28.2% LTAMGAYDRMLGG--WVPDDQQVATLLVRAVDPIA-------------AWPD----DDWRASWP-FA-HATADVPGDHFT 43 Q83X71-3084-3291 91.6% 25.1% LTALGAYHRFTST--WQPRDLAVPTLLVRACEPLG-------------EWPD---GTSWQSTWP-FP-HTCVDVPGNHFS 44 Q9F828-2989-3196 91.6% 26.0% LTALGAYDRLTGR--WRPRDTGLPTLVVAASEPMG-------------EWPD----DGWQSTWP-FG-HDRVTVPGDHFS 45 Q03133-2960-3167 91.6% 26.0% LTALGAYDRLTGQ--WRPRETGLPTLLVSAGEPMG-------------PWPD----DSWKPTWP-FE-HDTVAVPGDHFT 46 Q5UNP4-2959-3166 91.6% 26.0% LTALGAYDRLTGQ--WRPRETGLPTLLVSAGEPMG-------------PWPD----DSWKPTWP-FE-HDTVAVPGDHFT 47 UPI000011213B-71-278 91.6% 26.0% LTALGAYDRLTGQ--WRPRETGLPTLLVSAGEPMG-------------PWPD----DSWKPTWP-FE-HDTVAVPGDHFT 48 Q0PCZ8-1889-2098 92.5% 26.4% LIAMGKYFKIFTE--WGPGPVAAPTVFVRARDPLS--------------ETD--AQVDWRPEWP-LP-HTPVEVSGNHFT 49 Q70HZ7-1524-1730 90.7% 26.8% LTAMGHYFGFD----WTPCPVDVPVLHVRAGDPMT--------------GMP--VEGRWQARWN-LP-HTAVDVPGDHFT 50 Q0QMP7-1709-1908 85.9% 22.8% LTAMGRYLELLHT--LHPTPADVPTLLAAAERPIP----------------------ARPLPWP-LP-HTEVVVPGDHFT 51 Q5VKR3-1597-1797 88.5% 28.6% LTAMGGYLRLLSD--WKPAEIGAPVLLGHAAEPPQ---------------------DAPDRQWH-QP-HHGAVLPGDHFT 52 Q0QMN4-1626-1831 90.7% 27.3% LTAMGAYLRLLTD--WAPADAAAPVLVARTTRALA-------------------GFDRPPATWD-HP-HDTVEVAGDHFT consensus/100% h.s.thh..h............hs.h.h.s.p.......................................h.h.upH.t consensus/90% l.AhuhY.thh.t..hts....sPsLhltstp........................tth...h......thhthsGsHhs consensus/80% LoAhutYhthhtt..hpst..tsPsLhlpAtc.h......................ttWtstas.hs.psshplsGsHho consensus/70% LoAhutYhphhtt..WpPt.stsPsLhlRAt-.hs................t....ssWpspWs.hs.assh-VsGsHao cov pid 241 : ] 257 1 Q7D9V6-1167-1393 100.0% 100.0% MMSTSSEAIATEIHDWI 2 O86335-1167-1393 100.0% 100.0% MMSTSSEAIATEIHDWI 3 UPI00005EE3CD-735-961 100.0% 100.0% MMSTSSEAIATEIHDWI 4 Q7U224-711-937 100.0% 99.6% VMSTSSEAIATEIHDWI 5 Q6D9L2-1894-2101 91.2% 22.8% LLTEYVAHTAKNLSDLL 6 Q9Z3T8-1852-2058 91.2% 23.3% LLSDEVQQTAQHLIQVL 7 Q87W69-1852-2058 91.2% 23.3% LLSDEVQQTAQHLILVL 8 Q6V1N7-1587-1799 93.8% 25.6% IVAENADATAALVHDWL 9 Q0ILD0-3374-3588 94.3% 28.9% MIEGSGDVTAAAVHRWL 10 Q93HJ1-3394-3608 94.3% 27.2% MLEGNGDVTAAAVHEWL 11 O30482-1727-1933 90.7% 23.2% VLTDEVADTAEALLGWL 12 Q0RTS6-2058-2276 95.6% 24.0% ILEEHSPTTVAAIRQFI 13 Q53840-8598-8807 91.6% 24.5% VVDH--PFLAQAVDDWL 14 Q8GBX4-3375-3574 87.2% 24.0% MLVTHAESTARAVHEWL 15 Q93NX7-1818-2026 91.6% 20.2% LAMEHSDLTAEAIENWL 16 Q9L4X1-1850-2058 91.6% 20.2% LAKEHSALTAQAIEGWL 17 Q6W5P8-1816-2031 93.8% 22.6% LIREDSGPAADLMDAWL 18 Q9EWA3-1805-2018 93.8% 25.4% MVRDDAPETARIVREWL 19 Q93H83-3124-3333 92.5% 19.8% MLEDHAGTTAAAVDSWL 20 Q6JHN6-7275-7484 92.5% 25.6% LMEEFAASTAQVVHDWL 21 Q70KH4-1989-2197 92.1% 23.3% IIREHSGPTLQAVHAWL 22 Q3WH62-1732-1948 94.7% 24.5% MMNEHAISTARNLHHWL 23 Q3VZI2-197-411 94.3% 25.0% MMNEHAGSTAHTVHAWL 24 Q0RK68-1934-2150 94.7% 28.4% MMNEHAASTARDLHRWL 25 Q2J8Q4-1847-2063 94.7% 27.5% MMNEHAASTAAVLHQWL 26 Q9S0R3-4672-4873 89.0% 24.2% MLEQFADSTARHVDEWL 27 Q9ALM2-5365-5577 93.0% 27.1% MMDEHAGSTAQAVASWL 28 Q76KZ3-3579-3804 95.2% 24.5% IIESQAAATADAVEGWL 29 Q0L663-1794-2002 91.6% 24.6% MMEGQVGATASVVRDWI 30 Q83WE6-1853-2066 94.3% 25.1% MLEDEVAATAEVVESWI 31 O30768-1644-1856 93.0% 28.4% MLTEYAADTASAVHDWL 32 O33958-1607-1819 92.5% 24.8% MMTEHASAAARLVHGWL 33 Q5SFB0-1137-1347 93.0% 26.0% LMTEHARHLAATLHTWL 34 Q331Q2-1144-1354 93.0% 25.1% LMTEHARHLAATVRSWL 35 A0ACI0-6119-6328 92.1% 23.7% MMAEHAGTTARAVHRWI 36 Q3S868-1834-2045 93.4% 27.3% MMEQHLKTTVDAVSGWL 37 Q52V49-3657-3868 93.4% 27.3% MMEEHAPTTAQAVEGWL 38 Q9ZGI2-1120-1335 93.0% 25.9% MMRDHAPAVAEAVLSWL 39 UPI0000E11D92-93-308 93.0% 25.9% MMRDHAPAVAEAVLSWL 40 UPI0000E11D94-93-308 93.0% 25.4% MMRDHAPAVAEAVLSWL 41 Q07017-3306-3514 92.1% 27.8% IMREHAEDAARHIDVWL 42 Q5Y9G6-2985-3192 91.6% 28.2% MMQEHAGQVAARITDWW 43 Q83X71-3084-3291 91.6% 25.1% MVQEHAGAVAERIRTWT 44 Q9F828-2989-3196 91.6% 26.0% MVQEHADAIARHIDAWL 45 Q03133-2960-3167 91.6% 26.0% MVQEHADAIARHIDAWL 46 Q5UNP4-2959-3166 91.6% 26.0% MVQEHADAIARHIDAWL 47 UPI000011213B-71-278 91.6% 26.0% MVQEHADAIARHIDAWL 48 Q0PCZ8-1889-2098 92.5% 26.4% MMEESAGSTADTLKGHL 49 Q70HZ7-1524-1730 90.7% 26.8% MMEDHAPRTADTVHDWL 50 Q0QMP7-1709-1908 85.9% 22.8% LIEDHAATTAAAVSAWL 51 Q5VKR3-1597-1797 88.5% 28.6% VLEDHATSTAEIVHEWL 52 Q0QMN4-1626-1831 90.7% 27.3% VLEEHADAAAQAVHEWL consensus/100% hh.t....hht.h..hh consensus/90% hhppps..hAt.l.tWl consensus/80% hhppputthAptlptWL consensus/70% hhp-cusssAptlcsWL