cov pid 1 [ . . . . : . . . 80 1 47|O87547 100.0% 100.0% VHLHVHSDFSLL---------DGAASVKALAAKAEKLG--QTALALTDHG-------NMFGAI-----NFYNACKE---- 2 DP3A_HELPY 100.0% 52.9% THLHLHTEYSLL---------DGANKIKILAKRVKELG--MKSVSVTDHG-------NMFGAI-----DFYTSMKK---- 3 DP3A_BORBU 100.0% 58.8% IHLHVHSDYSLL---------DGAAKISDIISKAKKCN--MSHIALTDHG-------NLFGAI-----KFYKEAKK---- 4 DP3A_TREPA 100.0% 66.2% VHLHVHSNYSLL---------DGASSLQRLVRTAKSLG--QEALALTDHG-------NMFGAL-----HFQKVCSA---- 5 DP3A_MYCTU 100.0% 55.9% VHLHNHTEYSML---------DGAAKITPMLAEVERLG--MPAVGMTDHG-------NMFGAS-----EFYNSATK---- 6 F9|Q9ZJF9 100.0% 52.9% THLHLHTEYSLL---------DGANKIKILAKRIKELG--MKSVSVTDHG-------NMFGAI-----DFYTSMKK---- 7 DP3A_AQUAE 100.0% 51.5% VHLHLHTQFSLL---------DGAIKIDELVKKAKEYG--YKAVGMSDHG-------NLFGSY-----KFYKALKA---- 8 49|O84549 100.0% 58.8% IPLHCHSQYSIL---------DATCSIKKFVAKAVEYQ--IPALALTDHG-------NLFGAV-----EFYKTCKQ---- 9 F6|Q9ZHF6 100.0% 44.1% VELHAHTKFSDQ---------DAITDVNEYVKRAKEWG--FPAIALTDHG-------NVQAIP-----YFYDAAKE---- 10 N8|Q9Z7N8 100.0% 54.4% IPLHCHSQYSVL---------DAMSSIKDFVAKGQEFG--IPALALTDHG-------NLYGAV-----DFYKECTQ---- 11 AB39586|CAB395 100.0% 54.4% VHLHNHTEYSML---------DGAAKITPMFAEVERLQ--MPAVGMTDHG-------NMFGAS-----EFYNTAIK---- 12 6|A59016 100.0% 55.9% VGLHIHSDYSLL---------DGASQLPALIDRAIELG--MPAIALTDHG-------VMYGAV-----ELLKVCRG---- 13 DP3A_SYNY3 100.0% 55.9% VGLHIHSDYSLL---------DGASQLPALIDRAIELG--MPAIALTDHG-------VMYGAV-----ELLKVCRG---- 14 DPO3_BACSU 100.0% 36.8% VELHLHSPMSQM---------DAVTGIGKLVEQAKKWG--HEAIALTDHA-------VVQSFP-----DAYSAAKK---- 15 996|BSPOLC_1 100.0% 36.8% VELHLHSPMSQM---------DAVTGIGKLVEQAKKWG--HEAIALTDHA-------VVQSFP-----DAYSAAKK---- 16 18|Q9Z618 100.0% 47.1% THLHVHTQYSLL---------DGAARLKDMFDACNEMG--MSHIAMSDHG-------NLHGAY-----DFFHSAKK---- 17 DP3A_ECOLI 100.0% 48.5% VHLRVHSDYSMI---------DGLAKTAPLVKKAAALG--MPALAITDFT-------NLCGLV-----KFYGAGHG---- 18 AD44403|AAD444 100.0% 50.0% AHLHQHTQFSLL---------DGAAKLQDLLKWVKETTPEDPALAMTDHG-------NLFGAV-----EFYKKATA---- 19 046|STPOL3A_1 100.0% 48.5% VHLRVHSDYSMI---------DGLAKTGPLVKKAASLG--MPALAITDFT-------NLCGLV-----KFYGAGHG---- 20 DP3A_SALTY 100.0% 48.5% VHLRVHSDYSMI---------DGLAKTGPLVKKAASLG--MPALAITDFT-------NLCGLV-----KFYGAGHG---- 21 99|O50399 100.0% 39.7% AELHAHSAYSFL---------DGASTPEELVEEAARLG--LCALALTDHD-------GLYGAV-----RFAEAAAE---- 22 DPO3_STAAU 100.0% 29.4% VEFHLHTAMSQM---------DGIPNIGAYVKQAADWG--HPAIAVTDHN-------VVQAFP-----DAHAAAEK---- 23 |SADNAPOL3_1 100.0% 29.4% VEFHLHTAMSQM---------DGIPNIGAYVKQAADWG--HPAIAVTDHN-------VVQAFP-----DAHAAAEK---- 24 DP3A_VIBCH 100.0% 41.2% IHLRIHSDFSMV---------DGLSKVPPLVKKVAAMG--MPAMALTDFT-------NLCGLV-----KFYSTAHN---- 25 YCIV_HAEIN 97.1% 35.3% YDLHCHSTAS-----------DGVLSPTELVHRAYAQG--VNVLALCDHD-------TIAGID-----EAEIAAKE---- 26 AD44402|AAD444 100.0% 35.3% VHLRLHTEYSLV---------DGLVRIKPLVKALTGMG--MPAVAVTDQN-------NMCSLV-----KFYKNAMG---- 27 35|O29035 97.1% 29.1% IDLHIHSNYS-----------DGQGSVEEIARRAKERG--LKAIAIVDHS-----IELPFGLT-----EKKARMREIEIE 28 49|O54049 100.0% 38.2% IHLRVHTEYSLL---------EGAVPVKKLIKLCDAMN--MPAIAVTDTN-------AMFAAL-----EFSVLAQG---- 29 91|Q58691 97.1% 29.9% FDFHTHTVFS-----------DGELIPAELVRRARVLK--HRAIAITDHA----DFSNYKELI-----EKTTIAKEELK- 30 AD28322|AAD283 97.1% 33.8% FELHSHSNRS-----------DGFLSPSKVVERAYNNG--VKVLSLTDHD-------TMAGVP-----EAVEAGRR---- 31 I9|Q9ZQI9 97.1% 33.8% FELHSHSNRS-----------DGFLSPSKVVERAYNNG--VKVLSLTDHD-------TMAGVP-----EAVEAGRR---- 32 6|C69176 97.1% 34.7% IDLHTHSLLS-----------DGELLPSELARRACVLG--HEAIAITDHI----DASNINTIT-----NLIDAVEDIG-- 33 DP3A_BACSU 100.0% 52.9% VHLQVHSGYSLL---------NSAAAVEELVSEADRLG--YASLALTDDH-------VMYGAI-----QFYKACKA---- 34 44|P94544 97.1% 28.0% GDLHMHSTWS-----------DGAFSIREMAEACIKKG--YQYMAITDHS---QYLKVANGLTA---ERLKQQAKEIDAL 35 45|O29745 97.1% 31.4% AELHVHSSFS-----------DGRDGVRKILEAAVEKK--LEVIAITDHD-------TVQGSL-----EAIDIVKEE--- 36 AB50954|CAB509 100.0% 39.7% THLHTVSGFSAR---------YGASHPERLAERAFERG--MDALALTDRD-------TLAGTV-----RFAKACAK---- 37 16|O67416 97.1% 21.4% GDLHMHTNWS-----------DGVNTLEEMVETAYKLG--YQYIVIGDHS---QSARVANGLD----PERYKQQWKEIDR 38 DP3A_HAEIN 100.0% 35.3% IHLRTHTDFSMI---------DSIVKVKPLVKACAANE--MVAMGLTDFT-------NFCGVV-----SFYSEMLS---- 39 22|O28722 97.1% 29.3% FDLHVHSVFS-----------DGELIPSEIARRMYAAG--NKGFAITDHA----DFTNIQDIL-----AKLTRIKEHM-- 40 DP3A_MYCGE 98.5% 44.1% VNLHTNSYYNFL---------NSALSPKKLVNLAINDQ--QKAVAITDP--------NLFGAV-----EFFITCKQ---- 41 DPO3_MYCGE 100.0% 29.4% VELVFHTKMTAF---------DGINDIEEYAQFAKERG--WKAITVTDKD-------NIHIYP-----KFYEVAKK---- 42 21|P96221 97.1% 24.4% GDLHLHSNWS-----------DGSAPIEEMMATAAALG--HQYCALTDHSP-RLTIANGLSPD-----RLRKQLDVIDEL 43 46|O64146 100.0% 30.4% IGCHCHTDRSNIR------LLDSTNSVKELLKTAVKME--YKGLAITDHE----VLSAHLDAI-----RTVREMKKKG-- 44 DP3A_RICPR 100.0% 29.4% IHLRTQSSYSFL---------ESALTIEKVVELALLHK--MPALCLSDRG-------NLFGSL-----EFSLYAVK---- 45 AA15204|CAA152 100.0% 29.4% IHLRTQSSYSFL---------ESALTIEKVVELALLHK--MPALCLSDRG-------NLFGSL-----EFSLYAVK---- 46 YF87_METJA 100.0% 23.4% ADLHIHTKYSGIGKFWKLKFPDSVEEPRNILKVAKKKG--IEVVAITDHN-------TIRGGV-----ETKKLEKE---- 47 YOR4_ANATH 98.5% 23.7% VETHCHTIASG----------HAYNNLEEMVLEAQKKG--LKGICITDHG---PEMPGSCSSL-----YFYNLIVVPR-- 48 50|O59050 97.1% 25.3% MDLHTHTVYS-----------DGIGLIRDNVAWAEKRG--LKIVGISDHI-------HFFTPS-----RFSAYINEINV- 49 22|O27522 98.5% 23.5% IDPHIHSVYSG----------DARGTPREILRRASAVG--LDAVAVADHN-------TMKGSI-----IALKESRG---- 50 50|O26650 97.1% 31.4% GDLHMHSLFS-----------DGIDSMEQMAEYASVLG--REYIAITDHA-------RYIDDP-----DAYFRAAER--- 51 AA78994|BAA789 97.1% 29.0% VELHSHTTVS-----------DGFQTPMEIVKIAAKAG--LAAIAVTDHD-------TFRGSS-----LAKRAAKLL--- 52 AB49744|CAB497 97.1% 26.7% MDLHTHTIYS-----------DGIGMVRDNVAWAEKRG--LKIVGISDHI-------HYFTPS-----KFSAYINEIRI- 53 DPO3_MYCPU 100.0% 26.1% IELSFRSKMSTM---------DGILSPLDIVKQAKKFN--HSSIAILDHN-------SVQAFP-----DFHNLTYKD--- 54 DP3A_MYCPN 98.5% 38.2% VNLHTNSYYNFL---------NSTLSPQKLVDLAVQDQ--QVAVCLTDP--------NLFGAT-----EFFLACQK---- 55 DPO3_MYCPN 100.0% 29.4% VELVFHTKMSAF---------DGINSVQEYAQFAKERD--WKTIAVTDKD-------NIHIYP-----TLYEVAKK---- 56 YCIV_ECOLI 97.1% 24.3% YDLHSHTTAS-----------DGCLTPEALVHRAVEMR--VGTLAITDHD-------TTAAIA-----PAREEISRS--- 57 64|P72464 97.1% 20.7% GDCHLHADWS-----------DGGSPMEEMGRTAAALG--HEWAALTDHS---PRLTVARGLS-----PARLREQLDVVA 58 94|Q55394 97.1% 21.6% YNFHLHTRCS-----------DGQMTPEGLIEQAIHQE--LQGLAITDHH-------CVAGYY-----RAQRWLTEHCH- 59 YCDX_ECOLI 98.5% 22.4% VDLHMHTVAST----------HAYSTLSDYIAQAKQKG--IKLFAITDHGPDMEDAPHHWHFI-----NMRIWPRVV--- 60 AD35644|AAD356 91.2% 14.1% CDFHVHTNMS-----------DGHLPLGEVVDLFGKHG--VDVVSITDHI-----------VD-----RRTLEQRKRNGE 61 77|O67277 94.1% 15.5% CDFHIHTEMS-----------DGSLSLRDVVDLYGSHG--FDVIAITDH---------VFDPT-----YLSKLRERGTKV 62 16|O67116 86.8% 20.3% YAFHVHTQFSY----------DSLGKPEDVKKAREICG--LDYVIVTDHE------------V-----DTFKLFEDK--- 63 11|AF074611_10 98.5% 26.5% KALMVRTDFSLG---------ESALKAENAVKIARDAG--YTAVISADSM-------NIASVI-----PLQRAAGD---- 64 AD35546|AAD355 98.5% 19.1% MIPWVISPYSFD---------GSVVRFEKLALLLKRKG--LKSVILADR--------NFHAAV-----KFNTIMRK---- 65 G4|Q9ZHG4 98.5% 19.1% MIPWVISPYSFD---------GSVVRFEKLALLLKRKG--LKSVILADR--------NFHAAV-----KFNTIMRK---- 66 AD35886|AAD358 77.9% 25.0% IDMHLHSTFSY----------DGKAEIDDIISQVQKLG--IEHFCITDH---------------------YEYENG---- 67 U3|Q9ZBU3 89.7% 18.1% GDHHIHTQYSS----------DGKYRVVDQVRQGARHG--MDWLVITDHGS-----------------NTHAKIGVEKVN 68 AD35684|AAD356 86.8% 17.4% GNLHSHTSYS-----------DGSGTPDQAYEYAKRY---LDVLAVTDHAY-----------------YFAQKINGKTKP 69 AE001789 92.6% 17.6% ADLHVHTCLSPC---------ADLLMIPPVVERASGD---VQILGIVDHN-------SAKNVP------AFLKMKK---- 70 Q57860 80.9% 23.5% VDLHVHSIVS-----------KCSLNPKGLLEKFCIKK--NIVPAICDHN------------------KLTKLN------ 71 Q60348 100.0% 16.2% VDLHIHSRFSGG--------TSKDMNVENILKYGKLKG--LNIIGTGDCTHP-----DYLEEIKQYKDRELILTTEIEDK 72 YHIC_LACLA 98.5% 18.3% LDYHFHSHFSA----------DSEELPRKHVIEAIAYG--LEEICFTEHRDFYFPGMDFSLNLPEYFQEINRLQAEFK-- consensus/100% h.....s.hs............t.......h..h.............-................................ consensus/90% hth+.+o.hS...........pu....t.hht.h...t..h.hhshsDp....................h.....t.... consensus/80% hch+hHo.hS...........-uh.t.tthhp.s.tht..h.hluloD+t.......sh.s.......phht.htt.... consensus/70% hcLHhHopaS...........Duh.phpphlctutphG..htslulTDHs.......shhuh......chhphhpp.... cov pid 81 . 1 . . ] 123 1 47|O87547 100.0% 100.0% ----------------------------KNIKPIIGCEFYVAP 2 DP3A_HELPY 100.0% 52.9% ----------------------------EGIKPIIGMEAYIHN 3 DP3A_BORBU 100.0% 58.8% ----------------------------AGIKPIIGIEAYMAK 4 DP3A_TREPA 100.0% 66.2% ----------------------------EGIKAIIGCELYVAP 5 DP3A_MYCTU 100.0% 55.9% ----------------------------AGIKPIIGVEAYIAP 6 F9|Q9ZJF9 100.0% 52.9% ----------------------------EGIKPIIGMEAYIHN 7 DP3A_AQUAE 100.0% 51.5% ----------------------------EGIKPIIGMEAYFTT 8 49|O84549 100.0% 58.8% ----------------------------NAIKPIIGCELYVAP 9 F6|Q9ZHF6 100.0% 44.1% ----------------------------AGIKPIFGIEAYLVS 10 N8|Q9Z7N8 100.0% 54.4% ----------------------------KGIQPIIGCECYIAP 11 AB39586|CAB395 100.0% 54.4% ----------------------------AGIKPIIGVEAYIAP 12 6|A59016 100.0% 55.9% ----------------------------KPIKPIIGNEMYVIN 13 DP3A_SYNY3 100.0% 55.9% ----------------------------KPIKPIIGNEMYVIN 14 DPO3_BACSU 100.0% 36.8% ----------------------------HGIKMIYGMEANLVD 15 996|BSPOLC_1 100.0% 36.8% ----------------------------HGIKMIYGMEANLVD 16 18|Q9Z618 100.0% 47.1% ----------------------------AGVTPIIGIEAYVAP 17 DP3A_ECOLI 100.0% 48.5% ----------------------------AGIKPIVGADFNVQC 18 AD44403|AAD444 100.0% 50.0% ----------------------------MGVKPIIGYEAYVAA 19 046|STPOL3A_1 100.0% 48.5% ----------------------------AGIKPIVGADFNVHN 20 DP3A_SALTY 100.0% 48.5% ----------------------------AGIKPIVGADFNVHN 21 99|O50399 100.0% 39.7% ----------------------------LDVRTVFGAELSLGA 22 DPO3_STAAU 100.0% 29.4% ----------------------------HGIKMIYGMEGMLVD 23 |SADNAPOL3_1 100.0% 29.4% ----------------------------HGIKMIYGMEGMLVD 24 DP3A_VIBCH 100.0% 41.2% ----------------------------CGVKPIIGADFTLQS 25 YCIV_HAEIN 97.1% 35.3% ----------------------------VGIELITGVEISTNW 26 AD44402|AAD444 100.0% 35.3% ----------------------------AGIKPICGADLWLSN 27 35|O29035 97.1% 29.1% -----------------------NAASLYGIKIYSGIECSINA 28 49|O54049 100.0% 38.2% ----------------------------AGLQPIVGCQVSVAY 29 91|Q58691 97.1% 29.9% -------------------------KYWDDIIVIVGVELTHIP 30 AD28322|AAD283 97.1% 33.8% ----------------------------FGIKIIPGIEISTLF 31 I9|Q9ZQI9 97.1% 33.8% ----------------------------FGIKIIPGIEISTLF 32 6|C69176 97.1% 34.7% --------------------------DNWDITVIPGAEITHAP 33 DP3A_BACSU 100.0% 52.9% ----------------------------RGINPIIGLTASVFT 34 44|P94544 97.1% 28.0% ------------------------NAEFENFRILKGVEMDILP 35 45|O29745 97.1% 31.4% ---------------------------HLPLKVLPGCEVTAST 36 AB50954|CAB509 100.0% 39.7% ----------------------------AGVRPLFGAELAVAA 37 16|O67416 97.1% 21.4% L---------------------NKEYNPKGFYILKGAEVDILP 38 DP3A_HAEIN 100.0% 35.3% ----------------------------SGMKPIIGADVKVKS 39 22|O28722 97.1% 29.3% --------------------------ESYEAKFLVGVEITHVP 40 DP3A_MYCGE 98.5% 44.1% ----------------------------NNIKPIIGLNLTVEY 41 DPO3_MYCGE 100.0% 29.4% ----------------------------YDLKAIYGLEFNLTD 42 21|P96221 97.1% 24.4% ------------------------REKFAPLRILTGIEVDILE 43 46|O64146 100.0% 30.4% -------------------------DMPEDFKLILGNEAYLVD 44 DP3A_RICPR 100.0% 29.4% ----------------------------KKLQPIHGVILNIQY 45 AA15204|CAA152 100.0% 29.4% ----------------------------KKLQPIHGVILNIQY 46 YF87_METJA 100.0% 23.4% ----------------------------FGVEVVIGSEIMTTE 47 YOR4_ANATH 98.5% 23.7% --------------------------KINGIMVFRGCEANIVD 48 50|O59050 97.1% 25.3% ------------------------IKEESEIVVLAGIEANILE 49 22|O27522 98.5% 23.5% ----------------------------MGITVVPAMELSTSA 50 50|O26650 97.1% 31.4% ---------------------------IEEIDVLAGVEVSILH 51 AA78994|BAA789 97.1% 29.0% ----------------------------GGVAVIPAAEVRSEW 52 AB49744|CAB497 97.1% 26.7% ------------------------AKEESDIVVLAGIEANILE 53 DPO3_MYCPU 100.0% 26.1% ----------------------------KDFKVIYGMTLSVIS 54 DP3A_MYCPN 98.5% 38.2% ----------------------------AHIKPLIGLSVTVRH 55 DPO3_MYCPN 100.0% 29.4% ----------------------------YGLKAIYGLECNLID 56 YCIV_ECOLI 97.1% 24.3% ---------------------------GLALNLIPGVEISTVW 57 64|P72464 97.1% 20.7% E----------------------LNATWAPFRLLTGIECDILD 58 94|Q55394 97.1% 21.6% -------------------------YPSLRPQLWTGIEITANL 59 YCDX_ECOLI 98.5% 22.4% ----------------------------DGVGILRGIEANIKN 60 AD35644|AAD356 91.2% 14.1% PLGAITEDKFQD-YLKRLWREQKRAWEEYGMILIPGVEITNNT 61 77|O67277 94.1% 15.5% PSVTEENFKD---YMKVLKEEQKRAWNEYRMLLIPGFEVTNNT 62 16|O67116 86.8% 20.3% -------------------------------NTITGIEKKIND 63 11|AF074611_10 98.5% 26.5% -----------------------------DMAVICGVKLNVVD 64 AD35546|AAD355 98.5% 19.1% ----------------------------HGLIPVHGLWKDGRI 65 G4|Q9ZHG4 98.5% 19.1% ----------------------------HGLIPVHGLWKDGRI 66 AD35886|AAD358 77.9% 25.0% -------------------------------ELVH--DFNVEE 67 U3|Q9ZBU3 89.7% 18.1% PDI------------------REARAAHEDTLVFQGLEWNIPA 68 AD35684|AAD356 86.8% 17.4% YLTK---------------LAAERHTKDGEFVALQGFEWTAGV 69 AE001789 92.6% 17.6% -------------------------------LVVPGIEIQTVE 70 Q57860 80.9% 23.5% -------------------------------FAIPGEEIATNS 71 Q60348 100.0% 16.2% ----------------------------NRVHHLILLPSISKV 72 YHIC_LACLA 98.5% 18.3% ----------------------------DEINIKIGLEMGIDL consensus/100% .................................h......... consensus/90% ..............................h..l.Ghph.h.. consensus/80% .............................tht.lhGh-h.h.. consensus/70% .............................slp.lhGhEhthh.