cov pid 1 [ . . . . : . . . 80 1 Q9NFM5/33-140 100.0% 100.0% TMDQCKQELGLPDSV----INDLYNFWKDDYVMTDRLAGCAINCLSTKLDIVDP-DGNLHHGNAKEFAMK--HGADDGMA 2 PBP_BOMMO/37-14 100.0% 63.0% ALDECKKEMTLTDAI----NEDFYNFWKEGYEIKNRETGCAIMCLSTKLNMLDP-EGNLHHGNAMEFAKK--HGADETMA 3 Q9TVG5/35-142 100.0% 59.3% ALDTCRKELDLPDSI----NADFYNFWKEGYELSNRQTGCAIMCLSSKLDLVDP-EGKLHHGNTHEFAKK--HGADDSMA 4 O16106/35-144 100.0% 43.6% PIKLCQQELGADDSV----VKEFLDFWKDGYVMKDRQTGCMLICMAMKLELLDS-AMEIHHGSTFAFAKA--HGADEAMA 5 Q9U6S8/38-144 99.1% 56.5% GLEECKKEMNLPDTV----DADFYNFWKDXYVLTNRDTGCAIMCLSNKLELVSD--GKLHHGNTLDFAKQ--HGADETVA 6 Q9U507/36-143 100.0% 48.1% VLDQCKHELGLTDQI----VVDLYQFWKLQYALLNRDTGCAIICMSKKLDLLDS-TGRMHHGNTQEFAVS--HGATDEVA 7 Q9U6S4/41-148 100.0% 46.3% ALDQCKTELAIQENV----LQDFYNFWREDYTLVNREMGCVLMCMASKFDLITE-DMKVHHKNAHEFAKT--HGADDEMA 8 Q9Y1H1/34-142 100.0% 55.0% PLEDCKKEMELSETV----ITDFYNFWKEGYEFTNRQFGCAILCLSSKLELLDQ-DLKLHHGKAQEFAKK--HGADEAMA 9 Q9NFM4/37-144 100.0% 52.8% GLDACKKEMDLPDTV----DVDFNNFWKEDYVVTNRDAGCAIVCLASKINLVDS-MGILIHGSAHEFAKQ--HGADDNMA 10 Q9U500/38-145 100.0% 40.7% VLQTCKTELSVGDHI----IQDFYNYWREDYDLLNRDFGCMVICMAVKHDLIND-QLTMHHGNAHAFAKT--HGADDDTA 11 O16105/34-142 100.0% 56.9% PMEACKQELNVPDAV----MQDFFNFWKEGYQITNREAGCVILCLAKKLELLDQ-DMNLHHGKAMEFAMK--HGADEAMA 12 O61562/1-106 98.1% 41.5% --DQCKNELNVGEHI----MQDMYNFWREEYELLNRDLGCMVMCMANKLDLIGE-DQKMHHGKAADFAKS--HGADDDQA 13 OBP2_BOMM/33-14 100.0% 29.6% ALEQCREESQLTEEK----MEEFFHFWNDDFKFEHRELGCAIQCMSRHFNLLTD-SSRMHHENTDKFIKS--FPNGEILS 14 Q9VAJ4/4-105 94.4% 18.5% YRDECVKELAVPVDL----VEKYQKWEYPN----DAKTQCYIKCVFTKWGLFDV-QSGFNVENIHQQLV----GNHADHN 15 OBP1_BOMM/34-14 100.0% 35.2% TLEECREESGLSVDI----LDEFKHFWSDDFDVVHRELGCAIICMSNKFSLMDD-DVRMHHVNMDEYIKG--FPNGQVLA 16 O18472/34-130 89.8% 14.8% VRENCAAETGADVA-----LVERVNAGADL--MPDDKLKCYIKCTMETAGMMAD--GEVDIEAVLALLP-------PELA 17 PBP1_DROM/38-13 90.7% 13.0% LRMRCLNQTGASVD-----VIDKSVKNRILP--TDPEIKCFLYCMFDMFGLIDS-QNIMHLEALLEVLP-------EEIY 18 Q9U513/30-126 89.8% 14.8% VRENCVDEIGVDEG-----LLAKVDDGADL--MPDPKLKCYLKCTMEMAGMISD--GVVDVEAVLGLLP-------DDVK 19 Q9V373/32-132 91.7% 14.5% ARKECAASSKVTEAL----IAKYKTFDYPD----DDITRNYIQCIFVKFDLFDE-AKGFKVENLVAQLGQ-----GKEDK 20 Q9VAI6/36-139 95.4% 15.6% YRTQCVEKVHASEEL----VEKYKKWQYPD----DAVTHCYLECIFQKFGFYDT-EHGFDVHKIHIQLAGP--GVEVHES 21 PBP2_DROM/37-14 95.4% 22.0% LANECKAETGATDED----VEQLMSHDLPE----RHEAKCLRACVMKKLQIMDE-SGKLNKEHAIELVKV-MSKHDAEKE 22 O02372/42-146 97.2% 14.8% IRSGCAPKFKLKTE-----DLDRLRVGDFNFP-PSQDLMCYTKCVSLMAGTVNK-KGEFNAPKALAQLP---HLVPPEMM 23 Q9V931/28-131 93.5% 19.8% YVSDCLASNNISQAEF-QELIDRNSSEEDDLENTDRRYKCFIHCLAEKGNLLDT-NGYLDVDKIDQIEPV---------S 24 PBP5_DROM/34-13 95.4% 22.9% SAESCMPEVGATDA-----DLQEMVKKQPA---STYAGKCLRACVMKNIGILDA-NGKLDTEAGHEKAKQ-YTGNDPAKL 25 Q25000/28-126 91.7% 11.1% HRSECLAETKPDEQL----VNKLKTGDYKT---ENEPLKKYALCMLIKSELMTK-DGKFKKDVALAKVPN------AADK 26 O77073/12-109 90.7% 18.5% LHDDCVSQTGVDEA-----HITTVKDQKGFPD--DEKFKCYLKCLMTEMAIVGD-DGVVDVEAAVGVLP-------DELK 27 O77231/30-125 88.9% 18.5% LHDGCVEETGVDNG-----LIGPCAKGNFAD---DQKLKCYFKCVFGNLGVISD-EGELDAEAFGSILP--------DNM 28 Q9V8Y9/1-102 94.4% 13.1% -MQQCMETNQVTEAD----LKEFMASGMQSSA--KENLKCYTKCLMEKQGHLT--NGQFNAQAMLDTLKN--VPQIKDKM 29 Q9VNL2/36-137 94.4% 13.0% AFEECREDYYVPDDI----YEKYLNYEFPA----HRRTSCFVKCFLEKLELFSE-KKGFDERAMIAQFTS----KSSKDL 30 Q9VNK2/71-167 89.8% 17.6% FHDACVEKTGVTEA-----AIKEFSDGEIH---EDEKLKCYMNCFFHEIEVVDD-NGDVHLEKLFATVP-------LSMR 31 Q26437/29-131 95.4% 21.3% IATECKEEAGASDA-----DFEAMVKHQPA---ESKEGKCMRACTLKKFGVMSD-DGKMIKDAAIELGKS--LVKDDEKK 32 Q9XZG8/18-116 91.7% 14.8% LHDVCVGKIGVEEA-----LIENLKNAEFT---EDDKLKCYVHCLLVQVGAMDL-AGHIDAEAAIELIP-------EQIR 33 Q9U5F2/14-118 96.3% 17.4% YATSCADSLGVSPED----MKLLMEKKFPT----SREGQCMPSCVNKKFGLQKA-DGTLNKEYRYSEMEN-VKAIDEEIY 34 Q9V8Y4/31-128 90.7% 14.8% NGALCAQQEGITKD-----QAIALRNGNFDDS--DPKVKCFANCFLEKIGFLI--NGEVQPDVVLAKLGP------LAGE 35 Q9V8Y8/21-121 93.5% 17.6% LVTDCLKENGVTPQD----LADLQSGKVKAED-AKDNVKCSSQCILVKSGFMDS-TGKLLTDKIKSYYAN------SNFK 36 Q9V8Y3/278-380 95.4% 17.6% IQQACIKELNIAAS-----DANLLTTDKEVA-NPSESVKCYHSCVYKKLGLLGD-DGKPNTDKIVKLAQI---RFSSLPV 37 Q9V8Y2/35-132 90.7% 15.7% HREQCAEEVKLTEEE----KAKVNAKDFNN---PTENIKCFANCFFEKVGTLKD--GELQESVVLEKLGA------LIGE 38 Q9VAI9/31-130 90.7% 13.6% IRVDCLKENPLSNDQ----ISQLKNLIFPN----EPDVRQYLTCSAIKLGIFCD-QQGYHADRLAKQFKM------DLSE 39 Q9U4Z7/36-142 95.4% 19.6% HIVKCSQEYGVSEGQ----IKDAKESVNPL-----GLNPCFLGCVLKSAGIIDK-NGLFDVEATKEKSKK--YISSEKDV 40 P91903/32-132 91.7% 12.7% IRRECHKEFPFSKEL----QKQEDELDFSD----DETVRKYEVCVFRKWGIIDA-DDTFHGERLVKQFEA-----VLDGV 41 B1_TENMO/24-121 90.7% 15.7% TSAECKTESGVSED-----VIKRARKGDLED---DPKLKMQLLCIFKALEIVAE-SGEIEADTFKEKLTR-----VTNDD 42 Q9U9J6/41-137 89.8% 16.7% DKARCMSEHGTTQAQ----IDDVDKGNLVN----EPSITCYMYCLLEAFSLVDD-EANVDEDIMLGLLP-------DQLQ 43 Q9VR94/49-153 94.4% 15.3% MRDVCLPKYPKVSVE----VADNIRNGDIPN---SKDTNCYINCILEMMQAIKK--GKFQLESTLKQMDI---MLPDSYK 44 PBP4_DROM/68-16 90.7% 11.1% VNRNCNASFITSMTN----VLQFNNTGDLPDDKDKVTSMCYFHCFFEKSGLMTD--YKLNTDLVRKYVWP---------- 45 Q27011/28-125 90.7% 13.0% HSDACKAESGVSEE-----SLNKVRNREEVD---DPKLKEHAFCILKRAGFIDA-SGEFQLDHIKTKFKE-----NSEHP 46 Q9V5S2/32-127 88.9% 12.0% MIRLCGDQTDIS-------LRELNKLQREDFSDPSESVQCFTHCLYEQMGLMHD--GVFVERDLFGLLS--------DVS 47 Q9UB31/26-134 93.5% 11.2% TVEECEKNIGDS-------LKDRVCELRQYTPVSSDDMDKHMQCVLEVVGFVDG-NGEVKESVLLELLQR------VDSG 48 Q9U3T6/31-130 90.7% 10.0% IRRECHKEHLFNEEL----QKHEEVLPLPD----EDVVRNYEVCVFTKWEFSNA-RNRFKKDRLVRQFEP------VLKR 49 Q9UB32/26-134 93.5% 10.3% TVEECERNIPAS-------LKERVCELRQYTPVQGKDMDSHMQCVLEVLGFVED-NGELVFQELLGVLKM------VDPD 50 Q9U9J5/36-140 96.3% 15.6% DIMPCADELHISED-----IATNIQAAKNGADMS--QLGCLKACVMKRIEMLKG--TELYVEPVYKMIEV-VHAGNADDI 51 Q9UB30/23-131 93.5% 13.8% TVKKCEKKMPAS-------LKSQLCEIRKYKLLDTPDMDKHMDCVMKALDFVRP-DGTGDYHKLIKPLNA------IEKD 52 Q9VR95/116-216 92.6% 14.7% FGDACTPKPSREN------IVEMVLNKEDA----KHETKCFRHCMLEQFELMPEDQLQYNEDKTVDMINM----MFPDRE 53 Q9VNL2/256-357 89.8% 16.8% TLLQCSRQLNATNVE----LLQYSKLKSKE------PIPCLFQCFADAMGFYDP-DGNWRLENWKQAFGP-----SGNED 54 159559/171-282 97.2% 13.9% YFEFCENKYYPAGSD----KRQQLCKIRQYTVLDDALFKEHTDCVMKGIRYITK-NNELDAEEVKRDFKL-----VNKDT 55 Q9VR96/65-166 93.5% 15.6% ARMECIQKLQLP--------RDQRPLGKVT--NPSEKEKCLVECVLKKIKLMDA-DNKLNVGQVEKLTSL-VTQDNKMAI 56 Q9VWM0/14-110 88.0% 13.6% NAEGCLKHHNLTSA-----QVQAVAPSTPVADVP-VAVKCYSRCLI--QDYFGD-DGKIDLQKVGKRGSQ---------- 57 Q9VNL2/151-247 87.0% 16.2% TLEKCLRQLSSPES-----IAGDLRKLERYSSWTREEVPCLMRCLAREKGWFDVEENKWRLKQLTEDLGA---------- 58 159559/30-138 96.3% 8.8% TFTRCMEDNLEDGPNRLPMLAKWKEWINEP--VDSPATQCFGKCVLVRTGLYDPVAQKFDASVIQEQFKA---YPSLGEK 59 Q9W372 89.8% 12.2% ARDQCGRELTAAQ-----RLQLDRMQFEDAA-----HVRHYLHCFWSRLQLWLD-ETGFQAQRIVQSFG----GERRLNV 60 Q9VNL1 85.2% 12.7% AMKDCLQDVHQD-------EWKSFDAFAYY--PVNEPIPCFTRCFVDKLHIFEEKTRLWKLEAMKQNLGIP--------- 61 Q9VNL1/1 84.3% 11.1% TINRCIQNYGGLTAEN-AERLERFKEWSDSY----EEIPCFTRCYLSEMFDFYNNLTGFNKDGIVGVFGR---------- 62 Q9W209 92.6% 8.0% VTESCAKQTNFRLPSP-NEEAIVDVTVDQAMV-----GTCWAKCVFDHYNLME-NNTLDMDKVRSYYKRYH--QTDPEYA consensus/100% ....C..p...................................C...................h................ consensus/90% .ht.C.tp..hs.........t...............h.phh.Ch...hthht.....h..t.h.t.h............ consensus/80% hhptChpphths.t.......p..p.........p.thtChh.Chhpphthhst.ttthphtthht.h............ consensus/70% hhppChpchshspt.....hhphhphhp.s....ptphtChhhChhpphshhst.psphphpthhphht........t.. cov pid 81 . 1 . . ] 124 1 Q9NFM5/33-140 100.0% 100.0% QQLVDIIHRCEKSTPPN---------DDKCTKTMDIAMCFKKEI 2 PBP_BOMMO/37-14 100.0% 63.0% QQLIDIVHGCEKSTPAN---------DDKCIWTLGVATCFKAEI 3 Q9TVG5/35-142 100.0% 59.3% KQLVELIHKCEGSVADD---------PDACMKVLNIAKCFKAEI 4 O16106/35-144 100.0% 43.6% QQIIDIVHGCTTTYPAAET-------NDPCQRAVNVAMCFKAHV 5 Q9U6S8/38-144 99.1% 56.5% QQLVDLIHTCEKALPDL---------EDPCLKVLEWAKCFKIEI 6 Q9U507/36-143 100.0% 48.1% SKVVVIIRDCEKQQEGE---------QDDCVRVLEVAKCFRTAI 7 Q9U6S4/41-148 100.0% 46.3% KQLVSMIHECEKTHEGV---------VDDCGRVLEMAKCFKTKI 8 Q9Y1H1/34-142 100.0% 55.0% KQLVDMIHGCSQSTPDV-----A---DDPCMKTLNVAKCFVAKI 9 Q9NFM4/37-144 100.0% 52.8% KQLSDTLHTCETIIGTG---------NDECTRALHVANCFKVEM 10 Q9U500/38-145 100.0% 40.7% QQLVTILRECEAKHQSV---------EDVCNRALEMAKCFRTKI 11 O16105/34-142 100.0% 56.9% KQLLDIKHSCEKVITIV-----A---DDPCQTMLNLAMCFKAEI 12 O61562/1-106 98.1% 41.5% KQLVGIVHDCENTHQGV---------EDACSRALEVAKCFRSKM 13 OBP2_BOMM/33-14 100.0% 29.6% QKMIDMIHTCEKTFDSE---------PDHCWRILRVAECFKDAC 14 Q9VAJ4/4-105 94.4% 18.5% EAFHASLAACVDKNEQG---------SNACEWAYRGATCLLKEN 15 OBP1_BOMM/34-14 100.0% 35.2% EKMVKLIHNCEKQFDTE---------TDDCTRVVKVAACFKKDS 16 O18472/34-130 89.8% 14.8% EHNAPSLRACGTVRG-----------ADHCDTAFRTQQCWQNAN 17 PBP1_DROM/38-13 90.7% 13.0% KTINGLVSSCGTQKG-----------KDGCDTAYETVKCYIAVN 18 Q9U513/30-126 89.8% 14.8% LRTTDIVRACDTQKG-----------ADDCDTAFLTQTCWQQAN 19 Q9V373/32-132 91.7% 14.5% AALKADIEKCADKNEQKSP---------ANEWAFRGFKCFLGKN 20 Q9VAI6/36-139 95.4% 15.6% DEVHQKIAHCAETHSKE---------GDSCSKAYHAGMCFMNSN 21 PBP2_DROM/37-14 95.4% 22.0% DAPAEVVAKCEAIETP----------EDHCDAAFAYEECIYEQM 22 O02372/42-146 97.2% 14.8% EMSRKSVEACRDTHKQF---------KESCERVYQTAKCFSENA 23 Q9V931/28-131 93.5% 19.8% DELREILYDCKKIYDEE---------EDHCEYAFKMVTCLTESF 24 PBP5_DROM/34-13 95.4% 22.9% KIALDIGETCAAITVP----------DDHCEAAEAYGTCFRGEA 25 Q25000/28-126 91.7% 11.1% PAVEKLIDACLANKGNT-----------PHQTAWNYVKCYHEKD 26 O77073/12-109 90.7% 18.5% AKAEPIMRKCGFKPGAN-----------PCDNVYQTHKCYYETD 27 O77231/30-125 88.9% 18.5% QELLPTIRGCAGTTG-----------ADPCELAMNFNKCLQKVD 28 Q9V8Y9/1-102 94.4% 13.1% DEISSGVNACKDIKGTN-----------DCDTAFKVTMCLKEHK 29 Q9VNL2/36-137 94.4% 13.0% STVQHGLEKCIDHNEAE---------SDVCTWANRVFSCWLPIN 30 Q9VNK2/71-167 89.8% 17.6% DKLMEMSKGCVHPEGDT-----------LCHKAWWFHQCWKKAD 31 Q26437/29-131 95.4% 21.3% DLVVEVIETCDGLEVN----------DDPCEAAEEYGHCVKSEF 32 Q9XZG8/18-116 91.7% 14.8% VSVIQEANKCAKDKEKV---------EDHCSRAFATIKCLHDVN 33 Q9U5F2/14-118 96.3% 17.4% NKMNSVWDKCVINGADG---------TDECDTGMKVVTCMKEES 34 Q9V8Y4/31-128 90.7% 14.8% DAVKAVQAKCDATKG-----------ADKCDTAYQLFECYYKNR 35 Q9V8Y8/21-121 93.5% 17.6% DVIEKDLDRCSAVKGAN-----------ACDTAFKILSCFQAAN 36 Q9V8Y3/278-380 95.4% 17.6% DKLKSLLTSCGTTKSAA-----------TCDFVYNYEKCVVKGI 37 Q9V8Y2/35-132 90.7% 15.7% EKTKAALEKCRTIKGEN-----------KCDTASKLYDCFESFK 38 Q9VAI9/31-130 90.7% 13.6% EEALQIAQSCVDDNAQKNP---------TDVWAFRGHQCMMASK 39 Q9U4Z7/36-142 95.4% 19.6% TNFDKIIKDCTEVNQKNVS-----DGNKGCDRAKELVTCFLAKR 40 P91903/32-132 91.7% 12.7% EGIEQKVNNCVDKNEQGSP---------IDVYASRIQQCIDKTD 41 B1_TENMO/24-121 90.7% 15.7% EESEKIVEKCTVTEDT------------PEDTAFEVTKCVLKDK 42 Q9U9J6/41-137 89.8% 16.7% ERAQSVMGKCLPTSG-----------SDNCNKIYNLAKCVQESA 43 Q9VR94/49-153 94.4% 15.3% DEYRKGINLCKDSTVG-------LKNAPNCDPAHALLSCLKNNI 44 PBP4_DROM/68-16 90.7% 11.1% -ATGDSVEACEAEGKDE---------TNACMRGYAIVKCVFTRA 45 Q27011/28-125 90.7% 13.0% EKVDDLVAKCAVKKDT------------PQHSSADFFKCVHDNR 46 Q9V5S2/32-127 88.9% 12.0% NTDYWPERQCHAIRGNN-----------KCETAYRIHQCQQQLK 47 Q9UB31/26-134 93.5% 11.2% VNHAANMKKCVTEASTSGSDKKA-NTFYTCFLGTSSLAGFKNAV 48 Q9U3T6/31-130 90.7% 10.0% EEIDEIIGRCADKNEQGSP---------VDVWVYRFQQCVSRSE 49 Q9UB32/26-134 93.5% 10.3% GDHAGSMKKCNAEAEKVDTSSKA-NTFYTCFLGTSSAQAFKYAV 50 Q9U9J5/36-140 96.3% 15.6% QLVKGIANECIENAKGE---------TDECNIGNKYTDCYIEKL 51 Q9UB30/23-131 93.5% 13.8% RKHDFNLEKCGGQTQHLPVGKRA-NAYYKCLVESTSGDAFKKVF 52 Q9VR95/116-216 92.6% 14.7% DDGRRIVKTCNEELKAE---------QDKCEAAHGIAMCMLREM 53 Q9VNL2/256-357 89.8% 16.8% QSSGADYSGCRLSGTQREVALS------KCSWMYHEYKCWERVN 54 159559/171-282 97.2% 13.9% KALEKVLNDCKSKEPSNAKEKS--WHYYKCLVESSVKDDFKEAF 55 Q9VR96/65-166 93.5% 15.6% AVSSSMAQACSRGISS----------KNPCEVAHLFNQCISRQL 56 Q9VWM0/14-110 88.0% 13.6% -EDHVILSQCKQQFDGV-------TNLDTCDYPYLILQCYFKGK 57 Q9VNL2/151-247 87.0% 16.2% ----DVYNYCRFELRR--------MGSDGCSFAYRGLRCLKQAE 58 159559/30-138 96.3% 8.8% SKVEAYANAVQQLPST----------NNDCAAVFKAYDPVHKAH 59 Q9W372 89.8% 12.2% EQALPAINGCNAKTSSRGSGAQT-----VVDWCFRAFVCVLATP 60 Q9VNL1 85.2% 12.7% -AKGARIRTCHRHRG-----------RDRCATYYKQFTCYAMAV 61 Q9VNL1/1 84.3% 11.1% ----PVYEACRKKLEL-----PFESGESSCKHAYEGFHCITNME 62 Q9W209 92.6% 8.0% TEMLNAYEKCHTQSEE----------ATEKFLSLPIVRAFSTAK consensus/100% .........s............................s..... consensus/90% ......httC...................s.hh.th..Ch.t.. consensus/80% tth.thhptCtt..tt.............C.hshphhpCh.tt. consensus/70% pph.thhptCttpttt............tCphshphhpChtpt.