cov    pid  1 [        .         .         .         .         :         .         .         . 80 
 1 GI|908917/1-80  100.0% 100.0%    APSQPSLNGGSPE-GVESQDGVDHFRAMIVE-FMASKKMQLEFPPSLNSHDRLRVHQIAEEH-GLRHDSSGEGKR---RF    
 2 GI|730752|SP|P4 100.0%  61.2%    VQSQHSSSANGSD-RTGGPDRTEHFRATIEE-FVASKESQLEFPTSLSSHDRLRVHQLAEEF-GLRHDSTGEGKA---RH    
 3 GI|2826877|EMB|  98.8%  18.8%    GDRSRLMLDIAGY-RADKRAELSELGAKAAA-EVRSSGESVQLKP-MTPFERKVVHDAVKAA-GLRSESEGEEPE---RF    
 4 GI|2808705|EMB|  98.8%  13.6%    GVRSRLMLDIARW-RRRRREELAALADEVAR-RVAETGDREELVP-MTPFERKIVHDAVAAVPGVHSESEGVEPE---RR    
 5 GI|2988416/1-80  98.8%  14.8%    AKGVKVVLDCENY-RIRREEMLIRMAYATAD-QVSASKRSVLLEP-MNPYERRLIHTTLHGISGVETRSEGEGLY---KQ    
 6 GI|1902826|DBJ|  98.8%  11.1%    RHGRKIVLDIESY-RDKRELSLVRLGKSVAA-TVAKTGKSKLLEP-MNPFERRIIHMALQENEKVFTRSEGNGTY---KK    
 7 GI|1652057/1-79  98.8%  16.2%    AEAADLRLFTRSG-SNDELEALEEARLAVEQ-IVIPTGQPVELLP-RSPHVRKMQHELVEHY-RLQSDSFGDEPN---RR    
 8 GI|1723347|SP|P  97.5%  13.8%    SDLNWVKLCKSK--KFYEIQALQEAKLAIEI-IILNENSIVQLTP-RSAYIRKMQHNLIDNY-QLRARSFGEEPY---RK    
 9 GI|4505387|REF|  98.8%  20.0%    SDSLKEDARKDLK-FVSDVEKEMETLVEAVN-KGKNSKKSHSFPP-MNRDHRRIIHDLAQVY-GLESVSYDSEPK---RN    
10 GI|730843|SP|P4  98.8%  15.0%    SEFVRGFAKKNPA-LTKSVYETLTDLVKLAK-ESKQRSRSHSFPT-MNREKRQLVHELCEVF-GIESVSYDKEPN---RN    
11 GI|2688352/1-80  98.8%  13.6%    GAFNRVILDIGDY-RERFKSRFINLAINSFH-KVKRTRRSILLPS-MNPFERRIVHTTLNRYSDIKTESEGDGNI---KR    
12 GI|4982025|GB|A  98.8%  16.0%    DTKLNVILDMGDY-REKRKKSLEKIVEEAVK-KAISEKTKVVLDP-MFSFERKIVHKLVRKHRGVISYSVGVEPY---RR    
13 GI|400078|SP|Q0  98.8%   9.6%    GQYKNVTVDAENY-RLKRKETLSQLAIKLAD-QVLKTKKSIQLEP-MPSSERKIIHDTLSGYANHQIKTYSMGEGEN-RH    
14 GI|1109825/1-81  98.8%  11.0%    PCYLKEMVRTNIDFVKSVEKILIDLVIQILSGEAYHDTFRAHLPA-MSIEKRRFVHEYANFF-NIASESVDSPPK---RS    
15 GI|3417428|EMB|  98.8%  20.7%    ESQKPSSSDSDNASLTRIDKIFINDVYQRMQQFKHSAIEEISLPP-CRKYVRRLVHALANDL-NLKSRSYGSGNK---RY    
16 GI|1653330/1-80  98.8%  17.3%    INFTPITVELAEF-RSRRQSELISLSEMAAQ-RVRETLEPVEMED-MTAADRRQVHSFFEDSQDLETESQGYEPH---RR    
17 GI|4886449|EMB|  92.5%  23.5%    LDGVFLSSAENDF-VHRIQEELDRFLLQ------KQLSKVLLFPP-LSSRLRYLIHRTAENFDLLSSFSVGEGWK---RR    
18 GI|3766365|EMB|  98.8%  18.8%    NDVAQYTKSLLVF-YGKHSDFADEVESLLRN-FVNNKASSFRFPS-MRREQRAFVHMFAKLL-GLESVSFDPEPK---RN    
19 GI|1730713|SP|P  98.8%  14.8%    ELQLPFTEAALSV-YSKQERWCSQIEAILNKLMDDKTRSSLHFKP-MRPPQRHFIRELAKAY-GLYSESQDREPM---RS    
20 GI|4757716|REF|  96.2%  22.0%    AARLKKLQEQEKQQKVEFRKRMEKEVSDFI---QDSGQIKKKFQP-MNKIERSILHDVVEVA-GLTSFSFGEDDDC--RY    
21 GI|3334231|SP|O  97.5%  18.8%    HKREGLGLDVER--VNKIAKRDIEQIIRNYA--RSESHTDLTFSRELTNDERKQIHQIAQKY-GLKSKSHGVGHD---RY    
22 GI|1353239/1-81 100.0%  21.0%    MGNKRFRSDNNAG-KPTSVEATRIWATKVIEDFRASGNEVYTFEHNLSNNERGVIHQMCRKM-GIQSKSSGRGEQ---RR    
23 GI|3877406|EMB|  98.8%  17.3%    NGFDASRVLPRGT-DNDTRKEYRRVANEIIRSFLKSGQKNTTLEP-MGRDQRKVMHEVALLN-EMTTKSHGREPD---RY    
24 GI|3183204|SP|Q  96.2%  18.5%    IDLHEFLVNTLKN-NPRDRMMLLKLEQEILDFIGNNESPRKKFPP-MTSYHRMLLHRVAAYF-GLDHNVDQSG-----KS    
25 GI|2623310/1-83  98.8%  17.9%    FNVDPFLVEALQ--NPRHRLTILRMELDVQRFLQSPDQQQFEFQHFPTSYLRFAAHRVANHY-GLITSVRDGGADGNESR    
26 GI|1004306|EMB|  96.2%  23.5%    WGLTPAMETGLFQ-KPQDRIFIIELENSIVSF-INSNTESFQLRP-MNSYYRLLSHQIAEYH-NLNHVLARTQD----SC    
   consensus/100%                   ..........................................h........R...+.hh.....h.....t.......p.    
   consensus/90%                    ........t.......p....h.p...........ttt..h.h...ht...Rhh.Hthht...tl.p.s.s.t.....+.    
   consensus/80%                    .t....h.t.t...h.p..t.h.ph..th.t..htpptpphph.s.hs...RhhlHphhp.h.slps.S.s.t.....+.    
   consensus/70%                    .th..hh.phtt..h.cpppth.phh.phhp..htppppphph.s.hss.pRthlHphsphh.slpopS.spt.....Rp    

                      cov    pid 81      ] 86 
 1 GI|908917/1-80  100.0% 100.0%    ITVSKR    
 2 GI|730752|SP|P4 100.0%  61.2%    ITVSRR    
 3 GI|2826877|EMB|  98.8%  18.8%    VVVLPA    
 4 GI|2808705|EMB|  98.8%  13.6%    VVVLRD    
 5 GI|2988416/1-80  98.8%  14.8%    VRVCHT    
 6 GI|1902826|DBJ|  98.8%  11.1%    VRIIPM    
 7 GI|1652057/1-79  98.8%  16.2%    LRIYPA    
 8 GI|1723347|SP|P  97.5%  13.8%    LRIYPE    
 9 GI|4505387|REF|  98.8%  20.0%    VVVTAI    
10 GI|730843|SP|P4  98.8%  15.0%    VVATAH    
11 GI|2688352/1-80  98.8%  13.6%    IRVSYV    
12 GI|4982025|GB|A  98.8%  16.0%    VVIEYS    
13 GI|400078|SP|Q0  98.8%   9.6%    LVISHK    
14 GI|1109825/1-81  98.8%  11.0%    IVLTAV    
15 GI|3417428|EMB|  98.8%  20.7%    TMLSKT    
16 GI|1653330/1-80  98.8%  17.3%    LVIRPR    
17 GI|4886449|EMB|  92.5%  23.5%    TVICHQ    
18 GI|3766365|EMB|  98.8%  18.8%    VMVYNK    
19 GI|1730713|SP|P  98.8%  14.8%    VFIKKE    
20 GI|4757716|REF|  96.2%  22.0%    VMIFKK    
21 GI|3334231|SP|O  97.5%  18.8%    LVVGRK    
22 GI|1353239/1-81 100.0%  21.0%    LSIFKS    
23 GI|3877406|EMB|  98.8%  17.3%    MILSKR    
24 GI|3183204|SP|Q  96.2%  18.5%    VIVNKT    
25 GI|2623310/1-83  98.8%  17.9%    IVVTKS    
26 GI|1004306|EMB|  96.2%  23.5%    VILFKG    
   consensus/100%                   h.h...    
   consensus/90%                    hhl...    
   consensus/80%                    lhl..t    
   consensus/70%                    lhl.tp