Family alignment for the RA domain, displayed in

                      cov    pid  1 [        .         .         .         .         :         .         .         . 80 
 1 E1357084/1-99   100.0% 100.0%    NEHTLRIYPGTIS---EGTIYCPIPARKNSTAAEVIDSLINRLHLDK---------TKCYVLAEVKE------------F    
 2 Q63358/1-100    100.0%  45.0%    ATFHLHIYPQLPSA--GSQTSCRVTATKDSTTSDVIRDVVASLHLDG---------SKHYVLVEVKE------------S    
 3 O75088/1-95      90.9%  19.2%    FHGVMRFYFQDKAA--GNFATKCIRVSSTATTQDVIETLAEKFRPDMR-----MLSSPKYSLYEVH--------------    
 4 Q24279/1-93      91.9%  21.8%    TGGTLKIYGESLC---QDVPYKTLLLSIRDCAQAVVREMLTKYGLEK-------ADPLHYCLVQVN-------------S    
 5 Q17860/1-100     97.0%  19.4%    DKDEVKVYGGWLRK--VPVTFCAISVSKDTVVQDLVTDALYHFGLDG-------SCWNRYNLIEVSL-----------DR    
 6 O75088_1/1-103   92.9%  22.7%    SGGTLRIYADSLK---PNIPYKTILLSTTDPADFAVAEALEKYGLEK-------ENPKDYCIARVMLPPGA---QHSDEK    
 7 O61776/1-108    100.0%  17.6%    HTHTVAVYMHSFN-PDCENDTVHLEVHKRCTTEELIEKVLAGRAELE------GQSVQDFDLFEMMGTP--------DGQ    
 8 KDGD_HUMAN/1-10  98.0%  19.6%    AQEVLKIYPGWLK---VGVAYVSVRVTPKSTARSVVLEVLPLLGRQA-------ESPESFQLVEVAM-----------GC    
 9 Q14449/1-87      87.9%  14.1%    KKQVIKVYSED-------ETSRALDVPSDITARDVCQLLILKNHYID---------DHSWTLFEHLP------------H    
10 Q14451/1-87      87.9%  19.2%    RPHVVKVYSED-------GACRSVEVAAGATARHVCEMLVQRAHALS---------DETWGLVECHP------------H    
11 Q60695/1-88      85.9%  17.6%    DTCIIRISVED----NNGHMYKSIMLTSQDKTPAVIQRAMSKHNLES-------DPAEEYELVQVI-------------S    
12 P91575/1-107    100.0%  15.9%    DVGVLKVDTRSVK---QCTDYKTIRVTNSTTARQVVEKFLTTLKLTC-------RDINMFELWMELTTRA------SGAP    
13 O00427/1-85      85.9%  14.1%    AKQDVKVFSED-------GTSKVVEILADMTARDLCQLLVYKSHCVD---------DNSWTLVEHHP------------H    
14 O35329/1-88      88.9%  14.1%    KKLVVKVHMDD-------SSTKSLMVDERQLARDVLDNLFEKTHCDC---------NVDWCLYEIYP------------E    
15 GNDS_HUMAN/1-88  85.9%  13.7%    DCCIIRVSLDV----DNGNMYKSILVTSQDKAPAVIRKAMDKHNLEE-------EEPEDYELLQIL-------------S    
16 O60539/1-95      92.9%  15.7%    RGTSVRRRTSFYL---PKDAVKHLHVLSRTRAREVIEALLRKFLVVD--------DPRKFALFERAER----------HG    
17 O35141/1-93      90.9%  14.7%    ATTDKRTSFYLPL-----DAIKQLHISSSTTVSEVIQGLLKKFMVVD--------NPQKFALFKRIHK----------DG    
18 Q19852/1-94      90.9%  14.6%    SFYLARVGLDDDLQNTDGANYKCIKIENGDRMPQLVARALEKHLIED--------DKNTYLLVQLL-------------P    
19 ST50_YEAST/1-93  90.9%  14.7%    HPSAVSTANTPGPS--PNEALKQLRASKEDSCERILKNAMKRHNLAD-------QDWRQYVLVICY--------------    
20 Q22744/1-101     92.9%  13.0%    KTTSLRTITSFFL---PRNTAKVINIDSKTTARKMIVTLLKKFRVAD--------NPRKFALYECEQITDE----ATCTL    
21 Q22503/1-88      86.9%  16.8%    PEHVLKIYRND-------QTFKYLPVYKETSAQNVVQLALQEFNMTA-------EGSPEWSLCECT--------------    
22 Q00425/1-92      90.9%  10.9%    FQNYLRVAFQE---VNSGCTGKTLLVRPYITTEDVCQICAEKFKVGD---------PEEYSLFLFV--------------    
23 D1021609/1-87    86.9%  20.0%    PDQVLRVFKAD-------QQSRYIMISKDTTAKEVVIQAIREFAVTA--------TPDQYSLCEVS--------------    
24 Q61193/1-88      86.9%  15.8%    DCRIIRVQMELGE---DGSVYKSILVTSQDKAPSVISRVLKKNNRDS-------AVASEFELVQLL-------------P    
25 Q02833/1-84      84.8%  17.2%    AAMELKVWVDG-------IQRVVCGVSEQTTCQEVVIALAQAIGQTG-----------RFVLVQRL--------------    
26 Q19926/1-93      91.9%  16.8%    DTFLVCVHNVS-----EDQPYAILRAGIHSTAADIIRQVFVKARRSN-------VDDSEFVLVEET--------------    
27 MI10_CAEEL/1-89  89.9%   8.1%    KVTKIFVKFFV-----EDGEALQLLIDERWTVADTLKQLAEKNHIAL---------MEDHCIVEEYP------------E    
28 STE4_SCHPO/1-89  87.9%  15.8%    GSFDLEVNDSL------TNAEKNRKLNVNLTYNEVLCSMLQRYRIDP-------NTWMSYDLLINY--------------    
29 Q19926_1/1-96    89.9%  17.0%    QIFVLRITGAF-----ADETAITVHSESGSTVKTVMQQALLNAGKNA-------DQVEEYVLIEESLPA-------PSGE    
30 Y168_HUMAN/1-92  91.9%  16.0%    HFYNHKTSVFTP----AYGSVTNVRINSTMTTPQVLKLLLNKFKIEN--------SAEEFALYVVH-------------T    
31 CYAA_NEUCR/1-83  81.8%  13.9%    SNYYIRVFRSD-------STWTTLTLPLTATAEDVIMGVAKKTYLPP-------GAQDSYSLLIKK--------------    
32 O15010/1-82      82.8%  11.1%    FQHLLRVAYQDPS---SGCTSKTLAVPPEASIATLNQLCATKFRVTQ---------PNTFGLFLYK--------------    
33 CYAA_PODAN/1-81  81.8%  11.1%    HNYCIRVFRAD-------GTFATLQMPLLTSVSELINQIVKKSYLQD---------PDKFKLVLKK--------------    
34 O75901/1-97      88.9%  14.8%    DSEEKEIVVWV-----CQEEKFVCGLTKRTTSADVIQALLEEHEATFGEKRFLLGKPSDYCIIEKW--------------    
35 O13488/1-81      81.8%  12.1%    TSYCIRVFKSD-------GTFATLQMSIDSSVQDLIGQLSKKSYVSG---------GLEYHIALRK--------------    
36 CYAA_SCHPO/1-81  80.8%  17.0%    KEFFLRVYRDD-------RTSVSFICPIGIQTHEVIKLLARLFFLPS--------SANFYLLLIQF--------------    
37 Q17860_1/1-90    88.9%  16.8%    DFEIIRVFDGNNSY--RSQISRNIVVAKHVSVQQVRDAALRRFHIND--------TPERYYITQVV--------------    
38 CYAA_YEAST       81.8%   8.1%    RHYAIRIFNTD-------DTFTTLSCTPATTVEEIIPALKIKFNITA---------QGNFQISLKV--------------    
   consensus/100%                   ....h.h..............h.h..........h...h....................a.l..................    
   consensus/90%                    ....hph..............h.h.h..t.ps.tlh..hh.t..h.............pa.lh.................    
   consensus/80%                    t...l+lh.t........t..t.l.h..p.sstpllt.hhtchth.t..........tpa.Lh.hh..............    
   consensus/70%                    pthhl+lhhts.......tshpslhlstpsosppllpthhp+hthss.........sppasLhphh..............    

                      cov    pid 81          .         1         .         .  ] 123
 1 E1357084/1-99   100.0% 100.0%    GGEEWILNPTDCPVQRMMLWPRMALENRLSGEDYRFLLREKNL    
 2 Q63358/1-100    100.0%  45.0%    GGEEWVLDASDSPVHRVLLWPRRAQKEHPREDGYYFLLQERNA    
 3 O75088/1-95      90.9%  19.2%    VSGERRLDIDEKPLVVQLNWNKD-------DREGRFVLKNEND    
 4 Q24279/1-93      91.9%  21.8%    DGTEYILDDDECPLSILMNHPTS-------RGSIMFHVRRRPA    
 5 Q17860/1-100     97.0%  19.4%    GVAERTCNPQENVLQLVRNLRKD---SLRRYHVVRFYVQEKED    
 6 O75088_1/1-103   92.9%  22.7%    GAKEIILDDDECPLQIFREWPSD-------KGILVFQLKRRPP    
 7 O61776/1-108    100.0%  17.6%    TYKERRLDPGEYPVAVQAIWSRLPVVVDSATPKNRFVFRHRGY    
 8 KDGD_HUMAN/1-10  98.0%  19.6%    RHVQRTMLMDEQPLLDRLQDIRQ--MSVRQVSQTRFYVAESRD    
 9 Q14449/1-87      87.9%  14.1%    IGVERTIEDHELVIEVLSNWGIE--------EENKLYFRKNYA    
10 Q14451/1-87      87.9%  19.2%    LALERGLEDHESVVEVQAAWPVG--------GDSRFVFRKNFA    
11 Q60695/1-88      85.9%  17.6%    EDKELVIPDSANVFYAMNSQVNF-----------DFILRKKNS    
12 P91575/1-107    100.0%  15.9%    VVTLLKLDPESRPYELQRCHPIGMSRFILLQSPTGYLVRVHDH    
13 O00427/1-85      85.9%  14.1%    LGLERCLEDHELVVQVESTMASE----------SKFLFRKNYA    
14 O35329/1-88      88.9%  14.1%    LQIERVFEDHENVVEVLSDWTRD-------TENKVLFLEKEER    
15 GNDS_HUMAN/1-88  85.9%  13.7%    DDRKLKIPENANVFYAMNS-----------TANYDFVLKKRTF    
16 O60539/1-95      92.9%  15.7%    QVYLRKLLDDDEPLRLRLLAGPS-------DKALSFVLKENDS    
17 O35141/1-93      90.9%  14.7%    QVLFQKLSIADCPLYLRLLAGPD-------TDVLSFVLKENET    
18 Q19852/1-94      90.9%  14.6%    RGGEFVLPDNCNPFYAMAPDPTS--------PMLNLLLRKRDG    
19 ST50_YEAST/1-93  90.9%  14.7%    GDQERLLELNEKPVIIFKNLKQQ-------GLHPAIMLRRRGD    
20 Q22744/1-101     92.9%  13.0%    NRKLTRISDDACPLKVVLNWQSP-------HCGRALVLQENDT    
21 Q22503/1-88      86.9%  16.8%    VTIDGVIKQRRLPPQMENLAERI-------ALNSRYYLKNNSR    
22 Q00425/1-92      90.9%  10.9%    DETWQQLAEDTYPQKIKAELHSR-----PQPHIFHFVYKRIKN    
23 D1021609/1-87    86.9%  20.0%    VTPEGVIKQRRLPDQLSKLADRI-------QLSGRYYLKNNME    
24 Q61193/1-88      86.9%  15.8%    GDRELTIPHSANVFYAMDGASH------------DFLLRQRRR    
25 Q02833/1-84      84.8%  17.2%    REKERQLLPQECPVGAQATCGQF-------ASDVQFVLRRTGP    
26 Q19926/1-93      91.9%  16.8%    -CDDPKLNQGQSMLQALSLARKR---SNDRRPLRCFALYIHHF    
27 MI10_CAEEL/1-89  89.9%   8.1%    LYIKRVYEDHEKVVENIQMWVQD--------SPNKLYFMRRPD    
28 STE4_SCHPO/1-89  87.9%  15.8%    DDKEHAIPMDVKPLQLFRNLQKR-------GKSPSFVLSRRSC    
29 Q19926_1/1-96    89.9%  17.0%    DPIEQRVLPLNEPIMDAVACWNG--------SMRRFVLRKKGS    
30 Y168_HUMAN/1-92  91.9%  16.0%    SGEKQKLKATDYPLIARILQGPC------EQISKVFLMEKDQV    
31 CYAA_NEUCR/1-83  81.8%  13.9%    HDLFRVLNSAEQPLRIQKRLFQ------------QIGYQEKDG    
32 O15010/1-82      82.8%  11.1%    EQGYHRLPPGALAHRLPTT---------------GYLVYRRAE    
33 CYAA_PODAN/1-81  81.8%  11.1%    HDLYKVLQSTDRPLLLQKRLLE------------QVGFEERDR    
34 O75901/1-97      88.9%  14.8%    RGSERVLPPLTRILKLWKAWGDE-------QPNMQFVLVKADA    
35 O13488/1-81      81.8%  12.1%    HGLIRVLGSAEKPLFIQKRLLR------------QVGFEERDR    
36 CYAA_SCHPO/1-81  80.8%  17.0%    -NTERILLPHEQPCIIFERLLS------------LFGCKVTSD    
37 Q17860_1/1-90    88.9%  16.8%    GEVEEEILEDPVPLRNVKR---------PEGKRAQIFIRYYDD    
38 CYAA_YEAST       81.8%   8.1%    -GKLSKILRPTSKPILIERKLL-----------LLNGYRKSDP    
   consensus/100%                   ......h..............................h.....    
   consensus/90%                    .....hh..tt.s......................hhh..p..    
   consensus/80%                    .th.hhl..tp.sh.h...h..............thhhpppt.    
   consensus/70%                    .shcthl..pppsl.h.tth.p............pahhccptt