Family alignment for the RIBOc domain, displayed in

                     cov    pid   1 [        .         .         .         .         :         .         .         . 80 
 1 YM68_CAEEL/1-1 100.0% 100.0%     AYLVQAFTH-----ASYINNR--------------VTGCYQRLEFLGDAVLDYMITRYLFEDSRQYS----PGVLTDLRS    
 2 CAB41233        90.6%  24.7%     KLLHLAFIH-----PSMMSQQG-------------IYENYQQLEFLGDAVLDYIIVQYLYKKYPNAT----SGELTDYKS    
 3 RNC_ECOLI/1-13  75.4%  21.6%     ELLQQALTH-----RSASSK------------------HNERLEFLGDSILSYVIANALYHRFPRVD----EGDMSRMRA    
 4 RNC_SYNY3/1-13  77.8%  28.5%     QLKLEALTH-----RSYCNEHP-------------GTPSYDRLEFLGDAVLGFVVGRILFERYPHFT----EAELTRLRS    
 5 RNC_HAEIN/1-13  75.4%  24.0%     ALLKQALTH-----RSAATQ------------------HNERLEFLGDSILNFTIAEALYHQFPRCN----EGELSRMRA    
 6 RNC_COXBU/1-13  75.4%  21.6%     ELLKIALTH-----CSSGAD------------------NNERLEFLGDSVLGFIIASELYQRRPQAR----EGDLSRMRA    
 7 RNT1_YEAST/1-1  78.4%  19.1%     TIKDKVYLS-----GSEMIN-----------------AHNERLEFLGDSILNSVMTLIIYNKFPDYS----EGQLSTLRM    
 8 RNC_HELPY/1-13  76.0%  24.6%     RLLEQALTH-----KSCKLA-----------------LNNERLEFLGDAVLGLVIGELLYHKFYQYD----EGKLSKLRA    
 9 RNC_TREPA/1-13  77.8%  18.3%     TALDQALSH-----RSLFSSKED----------HCGVRHNERMEFLGDAVLGAVAAACLYRALPDSH----EGDLAKTKA    
10 A464_CHVP1/1-1  76.6%  19.3%     SYYKTAFSY-----NAIVEG----------------EATYERMEFVGDSVLGFIIARYLYDNFPGKD----EGFLSRLRT    
11 RNC_CAEEL/1-13  76.0%  20.3%     RLLAKAFTR-----RNIPNNDL-------------TKGHNQRLEWLGDSVLQLIVSDFLYRRFPYHH----EGHMSLLRT    
12 PAC1_SCHPO/1-1  75.4%  18.7%     EIYPNQSNP-----NELLDI------------------HNERLEFLGDSFFNLFTTRIIFSKFPQMD----EGSLSKLRA    
13 RNC_CAEEL_1/1-  76.6%  21.6%     MSLFNIMKG-----TSGGEP----------------ILHNERLEYLGDAVVELIVSHHLYFMLTHHF----EGGLATYRT    
14 X9|Q9XCX9/1-13  75.4%  25.1%     DLMVLALTH-----RSYAGR------------------NNERLEFLGDAILNFVIGEALFHHFPQAR----EGQLSRLRA    
15 37|Y346_SYNY3/  76.0%  19.9%     NLVDLALTH-----ASQSPE-----------------QNYQQLEFVGDAVVRLASAEVLMKHYPQTS----VGEMSALRA    
16 34|O31734/1-13  77.8%  28.7%     KLLYQAFTH-----SSYVNEHRK-----------KPYEDNERLEFLGDAVLELTISRFLFAKYPAMS----EGDLTKLRA    
17 RNC_MYCGE/1-13  74.9%  22.0%     EFFEKAFIH-----ASYINEHE------------DVSESYDRLEFLGDALIDFVVAKKLFELYPKYN----EGLLTRTKI    
18 YM68_CAEEL_1/1  75.4%  12.3%     CLLLTALTT-----SNAADG-----------------MSLERFETIGDSFLKFATTDYLYHTLLDQH----EGKLSFARS    
19 48|O51648/1-13  77.8%  21.8%     DLLNTALCH-----SSYSNELD------------QKSSNNERLEFLGDSVLNLIITDHLYKTYPNKS----EGELSKARS    
20 Q7|Q9ZBQ7/1-13  77.8%  25.6%     ALLVRALTH-----RSYAYENG-------------GLPTNERLEFLGDSVLGLVVTDTLYRTHPDLP----EGQLAKLRA    
21 RNC_MYCPN/1-13  74.9%  20.2%     QFYEDAFVH-----SSYVNENE------------DARASYDRLEFLGDALIDFIVAKKLFELYPNYN----EGMLTRTKI    
22 AB41233|CAB412  72.5%  16.4%     DTACQALTS-----AESQLN-----------------FDYDRLEFYGDCFLKLGASITVFLKFPDTQ----EYQLHFNRK    
23 69|O69469/1-13  79.5%  25.0%     ELLSLALTH-----RSYAYEHG-------------GLPTNERLEFLGDAVLSLTITDELFHRHPDRS----EGDLAKLRA    
24 43|O95943/1-16  94.7%  58.0%     AYLLQAFTH-----ASYHYNT--------------ITDCYQRLEFLGDAILDYLITKHLYEDPRQHS----PGVLTDLRS    
25 V9|Q9Y2V9/1-13  77.2%  23.3%     RLLARAFTL-----RTVGFNHL-------------TLGHNQRMEFLGDSIMQLVATEYLFIHFPDHH----EGHLTLLRS    
26 I6|Q9X0I6/1-14  77.8%  20.3%     ELLFRALCH-----SSYANEQNQ--------AGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAE----VGDLARVKS    
27 C7|Q9Z9C7/1-13  77.8%  23.1%     KLLEIALTH-----PSYKNESA------------VQIEDSERLEFLGDAVLGLIVTEHLFLLFPSMD----EGTLSTARA    
28 N5|Q9XYN5/1-13  75.4%  23.3%     RLLARAFTD-----RSIGFTHL-------------TLGSNQRLEFLGDTVLQLICSEYLYRHFPEHH----EGHLSLLRS    
29 31|RNC_RICPR/1  77.8%  23.6%     ELLIEALSH-----PSLRQYHEY-----------KYDKDYERLEFLGDAVLNLLITEILFKNFENYK----EGNLAKIRS    
30 RNC_SPICI/1-13  75.4%  25.0%     QYYLEALTH-----NSYANEHN-------------LSYTYQRMEFLGDAILAKEISLYLFLSFPDKN----EGEITNLRS    
31 U2|Q9Z5U2/1-13  75.4%  21.6%     ALFLRAMTH-----PSHGNS------------------DYQRLEFLGDRVLGLVIANWLYDLFPREP----EGKLSRRLN    
32 99|O84299/1-13  77.2%  24.3%     RLLITALTH-----PSYRNEFP------------SAEEDSERLEFLGDAVLGLVVTEHLFLLFPALN----EGLLSTTRA    
33 AAF26098a       91.2%  36.3%     SLLVEALTH-----GSYMMPE--------------IPRCYQRLEFLGDSVLDYLITKHLYDKYPCLS----PGLLTDMRS    
34 AAF03534a       91.2%  34.9%     GLLVEAITH-----ASRPSSG---------------VSCYQRLEFVGDAVLDHLITRHLFFTYTSLP----PGRLTDLRA    
35 N5|Q9XYN5_1/1-  76.0%  21.0%     NTLVSIMSRFGKEHETVSN-----------------ITHNERLEFLGDAVVEFLSSIHLFFMFPELE----EGGLATYRA    
36 V9|Q9Y2V9_1/1-  77.2%  18.5%     NTLINIMSR-----LGQDDPTP------------SRINHNERLEFLGDAVVEFLTSVHLYYLFPSLE----EGGLATYRT    
37 82|O67082/1-12  73.7%  23.4%     SLLEKALTH-----VSYSKK-----------------EHYETLEFLGDALVNFFIVDLLVQYSPNKR----EGFLSPLKA    
38 RNC_RHOCA/1-13  77.2%  22.2%     EHLVRALTH-----SSLGSAT---------------RPDNQRLEFLGDRVLGLSMAEALFHADGRAS----EGQLAPRFN    
39 61|O69161/1-13  77.8%  19.5%     NLLMQGITH-----VSALKSGR------------KRGDSYQRLEFLGDHVLGLVVSDMLYHAFPNAD----EGELSKRLA    
40 AF03534|AAF035  94.2%  20.9%     SKILEALTA-----ASCQET-----------------FCYERAELLGDAYLKWVVSRFLFLKYPQKH----EGQLTRMRQ    
41 AB52818|CAB528  75.4%  18.6%     KILNEALTH-----TSFNLS-----------------INHERLEFQGDAVLRLAASEYIQSHFPKLS----VGDRSALRA    
42 AA76772|BAA767  91.8%  10.4%     GLILQALTL-----SNASDG-----------------FNLERLEMLGDSFLKHAITTYLFCTYPDAH----EGRLSYMRS    
43 95|O23395/1-15  87.1%  25.1%     SLLLKAFTD-----ASYVDDK---------------SESYELLELLGDSILNMGIIYDFIKLYPKEA----PGPLTKLRA    
44 AF26098|AAF260  89.5%  13.7%     IKVLEAITT-----KKCEDQ-----------------FHLESLETLGDSFLKYAVCQQLFQHCHTHH----EGLLSTKKD    
45 48|O55748/1-12  68.4%  13.7%     NTYNTAFTS-----RGADDK-----------------NNYEMFEQLGDVSVNKFIVNYMYKRFPQLRNPNGVDVVAKLKI    
46 AB38218|CAB382  77.8%  18.8%     TLLYLAFQH-----PSCDRARAR-----------HVKNGHSRLWFLGQYVLELALTEFFLQRYPRES----PGPMRERVF    
47 O43042          85.4%  10.9%     KVLVQALID-----KTVVQNPQ---------------YSNEKLWSIGKVFGDFYVLEYIKCKYPRLP----EEAVHGMQN    
48 RM15_YEAST      82.5%  10.7%     ELILQCLTH-----KSFAHGSK---------------PYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCE-NGQLSLQFS    
49 O04455          73.1%  13.9%     NLLRRAMTH-----ASFSQE------------------NNKALSIFGTHIIETAVSLQFLAKDIDIS----SKALGRLIS    
50 O31418          77.2%  11.6%     MLEFDTIKD------SKQLN-------------------GLALAYIGDAIFEVYVRHHLLKQGFTKP-----NDLHKKSS    
51 RM03_YEAST      90.6%  10.5%     STLSRCLTCPSAKLPDKINNPTKGAAFVNT-VPTNKYLDNHGLNIMGKNLLSYHVTKSIIQKYPRLP----TVVLNAAVN    
52 AAD36805        73.7%  12.0%     EKLFRFEAE-----PEKLPP--------------------AVLAYLGDAVLELIFRSRFTGDYRMSVIHERVKEHTSKHG    
53 YAT4_SYNP1      78.4%  10.5%     PIVSDAIAA------QRLSP--------------------SALAYFGDAVYELFIRFIFLTPPQRIN------AYHHQVV    
54 P74327          76.6%  11.0%     SSLNPADAP-----AVQSLS-------------------PVALAYLGDAVFELYVRCCYLFPPRRIG------DFHRRVV    
55 AE003602        74.3%  10.3%     SELQRAFTE-----KSFAEREEDRRRQLGIEESDLQMPHNSDLVEKGQQIARAYVEAFLQHQLPKVP----NEGLQAIAS    
   consensus/100%                   ..........................................h...Gt..ht......................ht....    
   consensus/90%                    thh..shtt......s......................t.pththhGcthhthhht..hh....t.......t.ht.hh.    
   consensus/80%                    phh.pAhsp......sh..t..................p.ppLEalGDsllthhhsphlht.hsphp.....G.Lsthps    
   consensus/70%                    phl.pAhoc.....tSh.pp..................p.pRLEaLGDulLphhlsphLappaPphp....pGtLsph+s    

                     cov    pid  81          .         1         .         .         .         .         :         . 160
 1 YM68_CAEEL/1-1 100.0% 100.0%     ALVNNTI-FASLAVKFEFQKHFIAMCPGLYHMI-----------------------------------------------    
 2 CAB41233        90.6%  24.7%     FYVCNKS-LSYIGFVLNLHKYIQHES------------------------------------------------------    
 3 RNC_ECOLI/1-13  75.4%  21.6%     TLVRGNT-LAELAREFELG-------------------------------------------------------------    
 4 RNC_SYNY3/1-13  77.8%  28.5%     QLVNQNQ-LAYLARFLHIA-------------------------------------------------------------    
 5 RNC_HAEIN/1-13  75.4%  24.0%     TLVREPT-LAILARQFELG-------------------------------------------------------------    
 6 RNC_COXBU/1-13  75.4%  21.6%     SMVNGDE-LAQMSTKLGIN-------------------------------------------------------------    
 7 RNT1_YEAST/1-1  78.4%  19.1%     NLVSNEQ-IKQWSIMYNFH-------------------------------------------------------------    
 8 RNC_HELPY/1-13  76.0%  24.6%     SIVSAHG-FTKLAKAIALQ-------------------------------------------------------------    
 9 RNC_TREPA/1-13  77.8%  18.3%     VLVSTDT-LSDIALSLRID-------------------------------------------------------------    
10 A464_CHVP1/1-1  76.6%  19.3%     KFVSGKF-LSSIALRMGLH-------------------------------------------------------------    
11 RNC_CAEEL/1-13  76.0%  20.3%     SLVSNQT-QAVVCDDLGFT-------------------------------------------------------------    
12 PAC1_SCHPO/1-1  75.4%  18.7%     KFVGNES-ADKFARLYGFD-------------------------------------------------------------    
13 RNC_CAEEL_1/1-  76.6%  21.6%     ALVQNRN-LATLAKNCRID-------------------------------------------------------------    
14 X9|Q9XCX9/1-13  75.4%  25.1%     RLVKGET-LALLARGFEVG-------------------------------------------------------------    
15 37|Y346_SYNY3/  76.0%  19.9%     ILVSDRT-LAGWGELYGLD-------------------------------------------------------------    
16 34|O31734/1-13  77.8%  28.7%     AIVCEPS-LVSLAHELSFG-------------------------------------------------------------    
17 RNC_MYCGE/1-13  74.9%  22.0%     EIVKGEN-LNRIGMELKLG-------------------------------------------------------------    
18 YM68_CAEEL_1/1  75.4%  12.3%     KEVSNCN-LYRLGKKLGIP-------------------------------------------------------------    
19 48|O51648/1-13  77.8%  21.8%     YIVSEDS-LSNIAREINLG-------------------------------------------------------------    
20 Q7|Q9ZBQ7/1-13  77.8%  25.6%     AVVNSRA-LAEVGRGLELG-------------------------------------------------------------    
21 RNC_MYCPN/1-13  74.9%  20.2%     EIVKGEN-LNRIGKELNFG-------------------------------------------------------------    
22 AB41233|CAB412  72.5%  16.4%     KIISNCN-LYKVAIDCELP-------------------------------------------------------------    
23 69|O69469/1-13  79.5%  25.0%     SVVNTQA-LAYVARNLSDGGLG----------------------------------------------------------    
24 43|O95943/1-16  94.7%  58.0%     ALVNNTI-FASLAVKYDYHKYFKAVSPELFHVIDDFVQ------------------------------------------    
25 V9|Q9Y2V9/1-13  77.2%  23.3%     SLVNNRT-QAKVAEELGMQ-------------------------------------------------------------    
26 I6|Q9X0I6/1-14  77.8%  20.3%     AAASEEV-LAMVSRKMNLG-------------------------------------------------------------    
27 C7|Q9Z9C7/1-13  77.8%  23.1%     SLVNAKA-CCRYTTMLGIG-------------------------------------------------------------    
28 N5|Q9XYN5/1-13  75.4%  23.3%     SLVNNRT-QAVVCDDLGMP-------------------------------------------------------------    
29 31|RNC_RICPR/1  77.8%  23.6%     YLVCKET-ICIVGTKLALK-------------------------------------------------------------    
30 RNC_SPICI/1-13  75.4%  25.0%     KIVREGT-LAELVRRMNWA-------------------------------------------------------------    
31 U2|Q9Z5U2/1-13  75.4%  21.6%     SLVSGAS-CASIARIVGLP-------------------------------------------------------------    
32 99|O84299/1-13  77.2%  24.3%     ALVNAEA-CFEYTQKLSLG-------------------------------------------------------------    
33 AAF26098a       91.2%  36.3%     ASVNNEC-YALVAVKANLHKHILYAS------------------------------------------------------    
34 AAF03534a       91.2%  34.9%     AAVNNEN-FARVAVKHKLHLYLRHGS------------------------------------------------------    
35 N5|Q9XYN5_1/1-  76.0%  21.0%     AIVQNQH-LALLAKKLQLE-------------------------------------------------------------    
36 V9|Q9Y2V9_1/1-  77.2%  18.5%     AIVQNQH-LAMLAKKLELD-------------------------------------------------------------    
37 82|O67082/1-12  73.7%  23.4%     YLISEEF-FNLLAQKLELH-------------------------------------------------------------    
38 RNC_RHOCA/1-13  77.2%  22.2%     ALVRKET-CAAVARDIDLG-------------------------------------------------------------    
39 61|O69161/1-13  77.8%  19.5%     ELVRKES-CADVAKSLGLL-------------------------------------------------------------    
40 AF03534|AAF035  94.2%  20.9%     QMVSNMV-LYQFALVKGLQSYIQADRFAPSRWSAPGVPPVFDE-------------------------------------    
41 AB52818|CAB528  75.4%  18.6%     QLVSDRW-LAKVGYKIGIK-------------------------------------------------------------    
42 AA76772|BAA767  91.8%  10.4%     KKVSNCN-LYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSNTDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESL    
43 95|O23395/1-15  87.1%  25.1%     VNVDTEK-LARVAVNHQLYSYLRHKK------------------------------------------------------    
44 AF26098|AAF260  89.5%  13.7%     GMISNVM-LCQFGCQQKLQGFIRDECFEPKGWMV----------------------------------------------    
45 48|O55748/1-12  68.4%  13.7%     KYASKNQ-LQMLSESLDMW-------------------------------------------------------------    
46 AB38218|CAB382  77.8%  18.8%     ALIGKRY-LPKWIKAASLQ-------------------------------------------------------------    
47 O43042          85.4%  10.9%     GWMGSKA-LSQLATIWGLEVQRREEG------------------------------------------------------    
48 RM15_YEAST      82.5%  10.7%     NLGTKFA-KELTSKNTACTFVKLHN-------------------------------------------------------    
49 O04455          73.1%  13.9%     EVSNVESSCALDGDRLGLG-------------------------------------------------------------    
50 O31418          77.2%  11.6%     RIVSAKS-QAEILFFLQNQSFFTEE-------------------------------------------------------    
51 RM03_YEAST      90.6%  10.5%     AYISEAV-LAHIAKYWGIEVETTSVLSRYLKMEPFEFTLG----------------------------------------    
52 AAD36805        73.7%  12.0%     QAWMLEN-IWNLLDEREQE-------------------------------------------------------------    
53 YAT4_SYNP1      78.4%  10.5%     AHVRAES-QARYMDILWPHCT-----------------------------------------------------------    
54 P74327          76.6%  11.0%     AQVRAEQ-QAQILTTLLPQLTDP---------------------------------------------------------    
55 AE003602        74.3%  10.3%     YLLSTET-LAHVSTHLGTK-------------------------------------------------------------    
   consensus/100%                   ................................................................................    
   consensus/90%                    .hhptt.....hs..hth..............................................................    
   consensus/80%                    thlptpt.hs.huh.htht.............................................................    
   consensus/70%                    thVssps.hstlupphtht.............................................................    

                     cov    pid 161          .         .         .         2         .         .         .         . 240
 1 YM68_CAEEL/1-1 100.0% 100.0%     --------------------------------------------------------------------------------    
 2 CAB41233        90.6%  24.7%     --------------------------------------------------------------------------------    
 3 RNC_ECOLI/1-13  75.4%  21.6%     --------------------------------------------------------------------------------    
 4 RNC_SYNY3/1-13  77.8%  28.5%     --------------------------------------------------------------------------------    
 5 RNC_HAEIN/1-13  75.4%  24.0%     --------------------------------------------------------------------------------    
 6 RNC_COXBU/1-13  75.4%  21.6%     --------------------------------------------------------------------------------    
 7 RNT1_YEAST/1-1  78.4%  19.1%     --------------------------------------------------------------------------------    
 8 RNC_HELPY/1-13  76.0%  24.6%     --------------------------------------------------------------------------------    
 9 RNC_TREPA/1-13  77.8%  18.3%     --------------------------------------------------------------------------------    
10 A464_CHVP1/1-1  76.6%  19.3%     --------------------------------------------------------------------------------    
11 RNC_CAEEL/1-13  76.0%  20.3%     --------------------------------------------------------------------------------    
12 PAC1_SCHPO/1-1  75.4%  18.7%     --------------------------------------------------------------------------------    
13 RNC_CAEEL_1/1-  76.6%  21.6%     --------------------------------------------------------------------------------    
14 X9|Q9XCX9/1-13  75.4%  25.1%     --------------------------------------------------------------------------------    
15 37|Y346_SYNY3/  76.0%  19.9%     --------------------------------------------------------------------------------    
16 34|O31734/1-13  77.8%  28.7%     --------------------------------------------------------------------------------    
17 RNC_MYCGE/1-13  74.9%  22.0%     --------------------------------------------------------------------------------    
18 YM68_CAEEL_1/1  75.4%  12.3%     --------------------------------------------------------------------------------    
19 48|O51648/1-13  77.8%  21.8%     --------------------------------------------------------------------------------    
20 Q7|Q9ZBQ7/1-13  77.8%  25.6%     --------------------------------------------------------------------------------    
21 RNC_MYCPN/1-13  74.9%  20.2%     --------------------------------------------------------------------------------    
22 AB41233|CAB412  72.5%  16.4%     --------------------------------------------------------------------------------    
23 69|O69469/1-13  79.5%  25.0%     --------------------------------------------------------------------------------    
24 43|O95943/1-16  94.7%  58.0%     --------------------------------------------------------------------------------    
25 V9|Q9Y2V9/1-13  77.2%  23.3%     --------------------------------------------------------------------------------    
26 I6|Q9X0I6/1-14  77.8%  20.3%     --------------------------------------------------------------------------------    
27 C7|Q9Z9C7/1-13  77.8%  23.1%     --------------------------------------------------------------------------------    
28 N5|Q9XYN5/1-13  75.4%  23.3%     --------------------------------------------------------------------------------    
29 31|RNC_RICPR/1  77.8%  23.6%     --------------------------------------------------------------------------------    
30 RNC_SPICI/1-13  75.4%  25.0%     --------------------------------------------------------------------------------    
31 U2|Q9Z5U2/1-13  75.4%  21.6%     --------------------------------------------------------------------------------    
32 99|O84299/1-13  77.2%  24.3%     --------------------------------------------------------------------------------    
33 AAF26098a       91.2%  36.3%     --------------------------------------------------------------------------------    
34 AAF03534a       91.2%  34.9%     --------------------------------------------------------------------------------    
35 N5|Q9XYN5_1/1-  76.0%  21.0%     --------------------------------------------------------------------------------    
36 V9|Q9Y2V9_1/1-  77.2%  18.5%     --------------------------------------------------------------------------------    
37 82|O67082/1-12  73.7%  23.4%     --------------------------------------------------------------------------------    
38 RNC_RHOCA/1-13  77.2%  22.2%     --------------------------------------------------------------------------------    
39 61|O69161/1-13  77.8%  19.5%     --------------------------------------------------------------------------------    
40 AF03534|AAF035  94.2%  20.9%     --------------------------------------------------------------------------------    
41 AB52818|CAB528  75.4%  18.6%     --------------------------------------------------------------------------------    
42 AA76772|BAA767  91.8%  10.4%     MWRAPKEEADYEDDFLEYDQEHIRFIDNMLMGSGAFVKKISLSPFSTTDSAYEWKMPKKSSLGSMPFSSDFEDFDYSSWD    
43 95|O23395/1-15  87.1%  25.1%     --------------------------------------------------------------------------------    
44 AF26098|AAF260  89.5%  13.7%     --------------------------------------------------------------------------------    
45 48|O55748/1-12  68.4%  13.7%     --------------------------------------------------------------------------------    
46 AB38218|CAB382  77.8%  18.8%     --------------------------------------------------------------------------------    
47 O43042          85.4%  10.9%     --------------------------------------------------------------------------------    
48 RM15_YEAST      82.5%  10.7%     --------------------------------------------------------------------------------    
49 O04455          73.1%  13.9%     --------------------------------------------------------------------------------    
50 O31418          77.2%  11.6%     --------------------------------------------------------------------------------    
51 RM03_YEAST      90.6%  10.5%     --------------------------------------------------------------------------------    
52 AAD36805        73.7%  12.0%     --------------------------------------------------------------------------------    
53 YAT4_SYNP1      78.4%  10.5%     --------------------------------------------------------------------------------    
54 P74327          76.6%  11.0%     --------------------------------------------------------------------------------    
55 AE003602        74.3%  10.3%     --------------------------------------------------------------------------------    
   consensus/100%                   ................................................................................    
   consensus/90%                    ................................................................................    
   consensus/80%                    ................................................................................    
   consensus/70%                    ................................................................................    

                     cov    pid 241          :         .         .         .         .         3         .         . 320
 1 YM68_CAEEL/1-1 100.0% 100.0%     ------------------EKFVKLCSERNFDTNFNAEMYMVTTEEEIDEGQEE--DIEVPKAMGDIFESVAGAIYLDSGR    
 2 CAB41233        90.6%  24.7%     -------------------------AAMCDAIFEYQELIEAFRETASENPWFWF-EIDSPKFISDTLEAMICAIFLDSG-    
 3 RNC_ECOLI/1-13  75.4%  21.6%     ------------------------------------ECLRLGPGELKSGGF------RRESILADTVEALIGGVFLDSD-    
 4 RNC_SYNY3/1-13  77.8%  28.5%     ------------------------------------PEIRLSQSLARDDGQ------SSPSILADVFESLLGAALLDRG-    
 5 RNC_HAEIN/1-13  75.4%  24.0%     ------------------------------------DYMSLGSGELKNGGF------RRESILADCVEAIIGAMSLDQG-    
 6 RNC_COXBU/1-13  75.4%  21.6%     ------------------------------------EYLQLGVGEQKSGGK------RRRSILADALETIVGAIYIDAG-    
 7 RNT1_YEAST/1-1  78.4%  19.1%     ------------------------------------EKLKTNFDLKDENSNFQN---GKLKLYADVFEAYIGGLMEDDPR    
 8 RNC_HELPY/1-13  76.0%  24.6%     ------------------------------------DYLRVSSSEEISNGR------EKPSILSSAFEALMAGVYLEAG-    
 9 RNC_TREPA/1-13  77.8%  18.3%     ------------------------------------HYLLLGKGEELSGGR------HKKAILADATEAVIGALFLDSG-    
10 A464_CHVP1/1-1  76.6%  19.3%     ------------------------------------NYVIMHQKGLYRGWN------TNPRILEDVFEALMGAIYFDLG-    
11 RNC_CAEEL/1-13  76.0%  20.3%     ------------------------------------EFVIKAPYKTPELKL---------KDKADLVEAFIGALYVDRG-    
12 PAC1_SCHPO/1-1  75.4%  18.7%     ------------------------------------KTLVLSYSAEKDQLR------KSQKVIADTFEAYLGALILDGQ-    
13 RNC_CAEEL_1/1-  76.6%  21.6%     ------------------------------------EMLQYSHGADLINVA------EFKHALANAFEAVMAAIYLDGG-    
14 X9|Q9XCX9/1-13  75.4%  25.1%     ------------------------------------DYLRLGSGELKSGGF------RRESILADAMEALIGAIYLDTG-    
15 37|Y346_SYNY3/  76.0%  19.9%     ------------------------------------RFLWITP-AVLADKN------GRVSLMADSFEALLGALYLSVGD    
16 34|O31734/1-13  77.8%  28.7%     ------------------------------------DLVLLGKGEEMTGGR------KRPALLADVFEAFIGALYLDQG-    
17 RNC_MYCGE/1-13  74.9%  22.0%     ------------------------------------DFVKLSNGAELTE-----------NTVGDVLEALVGAIYEDMG-    
18 YM68_CAEEL_1/1  75.4%  12.3%     ------------------------------------QLIVANKFDAHDSWL------PPCYIPTCDFKAPNTDDAEEKD-    
19 48|O51648/1-13  77.8%  21.8%     ------------------------------------SYILLGRGEESNDGR------NKKGILADAIEAFVGAIYLDSG-    
20 Q7|Q9ZBQ7/1-13  77.8%  25.6%     ------------------------------------SFIRLGRGEEGTGGR------DKASILADTLEAVIGAVYLDQG-    
21 RNC_MYCPN/1-13  74.9%  20.2%     ------------------------------------NFIKLGKGMPYTE-----------TLFGDVLEALVAAIYEDLG-    
22 AB41233|CAB412  72.5%  16.4%     -------------------------------------KYALSTPLEIRHWC-------PYGFQKSTSDKCRYAVLQKLS-    
23 69|O69469/1-13  79.5%  25.0%     ------------------------------------VYLLLGRGETNTGGA------DKSSILADGMESLLGAIYLHHG-    
24 43|O95943/1-16  94.7%  58.0%     --------------------------FQLEKNEMQGMDSELRRSEEDEEKEE---DIEVPKAMGDIFESLAGAIYMDSGM    
25 V9|Q9Y2V9/1-13  77.2%  23.3%     -------------------------------------EYAITNDKTKRPVA------LRTKTLADLLESFIAALYIDKD-    
26 I6|Q9X0I6/1-14  77.8%  20.3%     ------------------------------------KFLFLGKGEEKTGGR------DRDSILADAFEALLAAIYLDQG-    
27 C7|Q9Z9C7/1-13  77.8%  23.1%     ------------------------------------DYLLIGKGEKIQSER------GRLSAYANLFESILGAVYLDGG-    
28 N5|Q9XYN5/1-13  75.4%  23.3%     ------------------------------------KYAVYAN-PKADLKT---------KDRADLLEAFLGALYVDKG-    
29 31|RNC_RICPR/1  77.8%  23.6%     ------------------------------------DYIIMTHGEEVAGGR------DNPNNIENATEALIAAIYLDSN-    
30 RNC_SPICI/1-13  75.4%  25.0%     ------------------------------------PFLLLGKGEIKTKGY------EKNRILADIYESMIAALYLDLG-    
31 U2|Q9Z5U2/1-13  75.4%  21.6%     ------------------------------------QWLRLGKQARDDGAA------ASDNVLGDVMEAMIGAIFLESG-    
32 99|O84299/1-13  77.2%  24.3%     ------------------------------------EHLLIGRGEKMQSHR------GKISAYANLLEAILGAVYLDGG-    
33 AAF26098a       91.2%  36.3%     -------------------------HHLHKHISRTVSEFEQSS-LQSTFGWES--DISFPKVLGDVIESLAGAIFVDSGY    
34 AAF03534a       91.2%  34.9%     -------------------------SALEKQIREFVKEVQTESSKPGFNSFGLG-DCKAPKVLGDIVESIAGAIFLDSGK    
35 N5|Q9XYN5_1/1-  76.0%  21.0%     ------------------------------------EFMLYAHGSDLCHEL------ELRHAMANCFEALMGALLLDGG-    
36 V9|Q9Y2V9_1/1-  77.2%  18.5%     ------------------------------------RFMLYAHGPDLCRES------DLRHAMANCFEALIGAVYLEGS-    
37 82|O67082/1-12  73.7%  23.4%     ------------------------------------KFIRIKR-GKINE-----------TIIGDVFEALWAAVYIDSGR    
38 RNC_RHOCA/1-13  77.2%  22.2%     ------------------------------------AVLKLGRSEMMSGGR------RKDALLGDAMEAVIAAVYLDAG-    
39 61|O69161/1-13  77.8%  19.5%     ------------------------------------DDIKLGSVGPSADAR------LRKSVLGDICEAVIGAIFLDGG-    
40 AF03534|AAF035  94.2%  20.9%     --------DTKDGGSSFFDEEQKPVSEENSDVFEDGEMEDGELEGDLSSYR-----VLSSKTLADVVEALIGVYYVEGG-    
41 AB52818|CAB528  75.4%  18.6%     ------------------------------------TTMLIANKALKDEAA-------TDTICAEGTEALIGALYECLR-    
42 AA76772|BAA767  91.8%  10.4%     AMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADKS-----------IADCVEALLGCYLTSCG-    
43 95|O23395/1-15  87.1%  25.1%     -----------------------PLLE--EQILEFVEAMEKYPLHSNGL-------LKVPKVLADIVESTIGAIFMDCN-    
44 AF26098|AAF260  89.5%  13.7%     ---------------PGQSSAAYSLVN--DTLPESRNIYVASRRNLKR------------KSVADVVESLIGAYLSEGG-    
45 48|O55748/1-12  68.4%  13.7%     ------------------------------------RFITATYDERTN---------KKKPLLEDTFESFFGA-------    
46 AB38218|CAB382  77.8%  18.8%     ----------------------------------NLIFPYDDMDKLIRKER--------EPPVKSVFWALFGAIYLCFG-    
47 O43042          85.4%  10.9%     --------------------------------LQESFGKVLAKRADPEMLRKPG-EIYKDEAARRAILAILGGVYLHQG-    
48 RM15_YEAST      82.5%  10.7%     ----------------------------------LDPFIFWKMRDPIKDGHIN----GETTIFASVLNAFIGAILSTNG-    
49 O04455          73.1%  13.9%     ------------------------------------KIIRVSTKTDASN----------SAILCTGFRAIFGAIAIDAG-    
50 O31418          77.2%  11.6%     ------------------------------------EEAVLKRGRNAKSGTTPKNTDVQTYRYSTAFEALLGYLFLEKK-    
51 RM03_YEAST      90.6%  10.5%     ----------------------------------RLKFFNNSLNSKDGIELITGKNFSETSALAMSVRSIIAAIWAVTEQ    
52 AAD36805        73.7%  12.0%     -----------------------------------IVKRAMNSKAAKRHGN------DPTYRKSTGFEALIGYLFLKRE-    
53 YAT4_SYNP1      78.4%  10.5%     --------------------------------AAELTIFRQGRNAAADGPKRVP---AKIYRQATGFEALLGYLYLTDPQ    
54 P74327          76.6%  11.0%     ----------------------------------EKEWVRRGRNAATSTSRRAN---PELYQAASGLETLLGYLYLRDA-    
55 AE003602        74.3%  10.3%     ------------------------------------DLIQSTEYPPSAES------------QAKSLHAVIGALASSSG-    
   consensus/100%                   ...............................................................t....t..h........    
   consensus/90%                    ......................................h.ht.....t..............htshhcuhhushh.p.t.    
   consensus/80%                    ....................................thh.hs.tt..pt...........thhusshEuhhuAlhhcts.    
   consensus/70%                    ....................................phhhhspttthpt...........phhusshEAllGAlal-tG.    

                     cov    pid 321          .         .    ] 345
 1 YM68_CAEEL/1-1 100.0% 100.0%     N-LDTTWQVIFHMMR--GTIELCCA    
 2 CAB41233        90.6%  24.7%     -FSLQSLQFVLPLFL--NSLGDATH    
 3 RNC_ECOLI/1-13  75.4%  21.6%     --IQTVEKLILNWYQ--TRLDEISP    
 4 RNC_SYNY3/1-13  77.8%  28.5%     --LTAVEDFIQELFV--PILEQWEK    
 5 RNC_HAEIN/1-13  75.4%  24.0%     --LAVTTQVIRNWYQ--QLLAEIKP    
 6 RNC_COXBU/1-13  75.4%  21.6%     --LETCRRCVLNWYG--ERVDDLSK    
 7 RNT1_YEAST/1-1  78.4%  19.1%     NNLPKIRKWLRKLAK--PVIEEATR    
 8 RNC_HELPY/1-13  76.0%  24.6%     --LAKVQKIMQNLLN--RAYKRLDL    
 9 RNC_TREPA/1-13  77.8%  18.3%     --FKAAERFVLRLLL--PRVRPIRE    
10 A464_CHVP1/1-1  76.6%  19.3%     --INAAKQFFMTTLA--KYADMQSL    
11 RNC_CAEEL/1-13  76.0%  20.3%     --IEHCRAFIRIVFC--PRLKHFIE    
12 PAC1_SCHPO/1-1  75.4%  18.7%     --EETAFQWVSRLLQ--PKIANITV    
13 RNC_CAEEL_1/1-  76.6%  21.6%     --LAPCDVIFSKAMY--GHQPVLKE    
14 X9|Q9XCX9/1-13  75.4%  25.1%     --MDSARERIIAWLG--PQLRELTP    
15 37|Y346_SYNY3/  76.0%  19.9%     --LSLIRPWLSEHLL--AKATEIRQ    
16 34|O31734/1-13  77.8%  28.7%     --LEPVESFLKVYVF--PKINDGAF    
17 RNC_MYCGE/1-13  74.9%  22.0%     --MKKATEFVEKYIF--ERTFSEIL    
18 YM68_CAEEL_1/1  75.4%  12.3%     ---NEIERILDGQVI--EEKPENKT    
19 48|O51648/1-13  77.8%  21.8%     --FSRATEFVVGLFD-MYIRLMFNR    
20 Q7|Q9ZBQ7/1-13  77.8%  25.6%     --LDAASELVHRLFD--PLIEKSSN    
21 RNC_MYCPN/1-13  74.9%  20.2%     --IEKANQFVEEHIF--KKTYSEIL    
22 AB41233|CAB412  72.5%  16.4%     ------VKRIADMVE--ASIGACLL    
23 69|O69469/1-13  79.5%  25.0%     --IEVARQVILRLFG--TLLDAAPT    
24 43|O95943/1-16  94.7%  58.0%     S-LETVWQVYYPMMR--PLIEKFSA    
25 V9|Q9Y2V9/1-13  77.2%  23.3%     --LEYVHTFMNVCFF--PRLKEFIL    
26 I6|Q9X0I6/1-14  77.8%  20.3%     --YEKIKELFEQEFE--FYIEKIMK    
27 C7|Q9Z9C7/1-13  77.8%  23.1%     --LSPARKLTVPLLP--PREEILPL    
28 N5|Q9XYN5/1-13  75.4%  23.3%     --LLYCEQFCHVCLF--PRLQLFIM    
29 31|RNC_RICPR/1  77.8%  23.6%     --IEITHNIIEKLWA--EFMKVQNL    
30 RNC_SPICI/1-13  75.4%  25.0%     ------EDVVRTFIN--NTLIRMVS    
31 U2|Q9Z5U2/1-13  75.4%  21.6%     --IEAAGKLIHKYWA--PLVTGQES    
32 99|O84299/1-13  77.2%  24.3%     --LSPARQIIVPLL---PDKESILP    
33 AAF26098a       91.2%  36.3%     N-KEVVFASIKPLLG--CMITPETV    
34 AAF03534a       91.2%  34.9%     D-TTAAWKVFQPLLQ--PMVTPETL    
35 N5|Q9XYN5_1/1-  76.0%  21.0%     --IKVADEVFTDALF--RQDEKLLS    
36 V9|Q9Y2V9_1/1-  77.2%  18.5%     --LEEAKQLFGRLLF---NDPDLRE    
37 82|O67082/1-12  73.7%  23.4%     D-ANFTRELFYKLFK--EDILSAIK    
38 RNC_RHOCA/1-13  77.2%  22.2%     --FEVARALVLRLWA--ARIQSVDN    
39 61|O69161/1-13  77.8%  19.5%     --HAAAAEFVKRNWTE-RMHKPRRP    
40 AF03534|AAF035  94.2%  20.9%     ---KIAANHLMKWIG---IHVEDDP    
41 AB52818|CAB528  75.4%  18.6%     -NIDAIQNWLEPYWN--IESEEVLA    
42 AA76772|BAA767  91.8%  10.4%     --ERAAQLFLCSLGL--KVLPVIKR    
43 95|O23395/1-15  87.1%  25.1%     --STETVWKISNHQK--MDFELRSA    
44 AF26098|AAF260  89.5%  13.7%     ---ELAALMFMNWVG--IKVDFTTT    
45 48|O55748/1-12  68.4%  13.7%     ------TEWLIDSFI--EDIALKQG    
46 AB38218|CAB382  77.8%  18.8%     --MPEVYRVLFEVFGMDPDADECQP    
47 O43042          85.4%  10.9%     --FNDTKKFINDHILS-KQLDPRTM    
48 RM15_YEAST      82.5%  10.7%     --SEKAAKFIQGSLLDKEDLHSLVN    
49 O04455          73.1%  13.9%     -TVDEAIKVFWKVHG--ARAGRLVS    
50 O31418          77.2%  11.6%     ------EERLSQLVA--EAIQFGTS    
51 RM03_YEAST      90.6%  10.5%     KDSQAVYRFIDDHIMS-RKLDITKM    
52 AAD36805        73.7%  12.0%     --FDRIEELLRVVMD----LESLRK    
53 YAT4_SYNP1      78.4%  10.5%     R-LQDVLALLEQHIR--AEVAAAES    
54 P74327          76.6%  11.0%     ---RRLDELLALIEL----PDAAPR    
55 AE003602        74.3%  10.3%     --IERAFIFVRDFIC--TQLNQKDL    
   consensus/100%                   .........h...............    
   consensus/90%                    .....h..hh..hh...........    
   consensus/80%                    ...t.s.phh..hh.....ht.h..    
   consensus/70%                    ..hp.stphl.thhh....ht.h..