Family alignment for the RPOLD domain, displayed in

                     cov    pid   1 [        .         .         .         .         :         .         .         . 80 
 1 RPOA_MYCLE/7-2 100.0% 100.0%     RSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDG------VLHEFTTVPGVKEDVTEIILNLKGLVVSSEED-    
 2 RPOA_STRCO/7-2 100.0%  84.5%     RSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDG------VLHEFTTVPGVKEDVTDLILNIKQLVVSSEHD-    
 3 RPOA_THETH/9-2  99.5%  51.4%     YGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIED------VLHEFSTIPGVKEDVVEIILNLKELVVRFLNPS    
 4 RPOA_THEAQ/9-2  99.5%  52.9%     YGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIED------VLHEFSTIPGVKEDVVEIILNLKELVVRFLDPK    
 5 RPOA_DEIRA/6-2  99.5%  47.1%     YGEFVLEPLARGYGVTIGNPIRRILMSSIPGTAVTSVYIED------VLHEFSTIPGVREDVIRLILNLKELVVKFHAP-    
 6 RPOA_XANCP/14-  99.5%  44.8%     RAKVVIEPLERGYGHTLGNALRRVLLSSIPGFAITEVEIDG------VLHEYTTVEGLQEDVLDVLLNLKDVAIRMHS--    
 7 RPOA_XYLFA/14-  99.5%  45.8%     RAKVVLEPLGRGYAHTLGNALRRVLLSSIPGFAITEVEIDG------VLHEYTTVEGLQEDVLEVLLNLKDVAIRIHS--    
 8 RPOA_PASMU/12-  99.5%  45.5%     HAKVILEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG------VLHEYSSKEGVQEDILEVLLNLKGLAVKVQN--    
 9 RPOA_VIBCH/12- 100.0%  46.9%     HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIEG------VLHEYSTKEGVQEDILEILLNLKGLAVRVAEG-    
10 RPOA_SHEVI/14-  99.5%  47.2%     RAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG------VLHEYSSKEGVQEDILEILLNLKGLAVVIEG--    
11 RPOA_SHESP/12-  99.5%  45.3%     RAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG------VLHEYSSIEGVQEDVLEILLNLKGLAIKLEG--    
12 RPOA_BUCAI/14-  99.5%  44.1%     HTKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG------VLHEYSTKEGVQEDVLEILLNLKALAVKVYG--    
13 RPOA_PSEAE/14-  99.5%  45.8%     RAKITLEPLERGFGHTLGNALRRILLSSMPGCAVVEAEIDG------VLHEYSAIEGVQEDVIEILLNLKGLAIKLHG--    
14 RPOA_BORPE/10-  99.5%  45.8%     HAKIVMEPFERGYGHTLGNALRRILLSSMTGYAPTEVQMTG------VVHEYSTIAGVREDVVDILLNLKGVVFKLHN--    
15 RPOA_NEIMA/12-  99.5%  45.3%     RAKVSMQPFERGFGHTLGNALRRILLSSMNGFAPTEVAIAG------VLHEYSTVDGIQEDVVDILLNIKGIVFKLHG--    
16 RPOA_AGRTU/13-  99.5%  51.2%     KATLVAEPLERGFGLTLGNALRRVLLSSLRGAAVTAVQIDG------VLHEFSSIPGVREDVTDIVLNIKEIAIKMDG--    
17 RPOA_RICPR/17-  99.5%  43.5%     KAKIIVEPLERGFGLTLGNAMRRVLLSSLQGAAITSIKIPA------IEHEFSSIPGVQEDVSEVILNIKGIEVKMHV--    
18 RPOA_BACHD/7-2  99.5%  50.7%     YGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVTSVQIDG------VLHEFSTIEGVVEDVTTIVLNLKQLALKIYS--    
19 RPOA_BACSU/7-2  99.5%  50.2%     FGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVTSIQIDG------VLHEFSTIEGVVEDVTTIILHIKKLALKIYS--    
20 BAB43316/7-227  99.5%  48.8%     FGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIEG------VLHEFSAVDNVVEDVSTIIMNIKQLALKIYS--    
21 RPOA_CLOPE/7-2  99.5%  49.8%     YGKFEIEPLERGYGITLGNALRRILLSSLPGVAPTSVKIDS------VLHEFSTITGVKEDVTEIILNLKMLALTMEG--    
22 RPOA_LACLA/7-2  99.5%  44.5%     YGKFVVEPLERGYGTTLGNSLRRVLLSSLPGAAVTSIQIEG------VQHEFATIPGVREDVIQIVLAVKGIAIKSYV--    
23 RPOA_SYNY3/9-2  99.5%  44.0%     YSKFSLEPLDRGQGTTVGNALRRVLLSNLPGAAVTAIRIAG------VNHEFATILGVREDVLEIMLNMKELVLKSYT--    
24 RPOA_THEMA/10-  99.0%  42.3%     YSRFSLSPLERGYAITIGNALRRVLLSSIPSLAIVGVRFIKPE----KYHEYDYIEGVKEDILDIILNLKKVQFRINVTV    
25 RPOA_AQUAE/9-2  99.0%  42.2%     YGRLVVEPLERGFGTTVGNSLRRVLLSSISGTAITAVKIYG------IYHEFSAIEGVQEDAIELIANLKKIKFLMKGDS    
26 RPOA_MYCGE/9-2  99.5%  33.8%     YGIFEVAPLESGFGITIGNAMRRVLLSCIPGASVFAIAISG------VKQEFSNVEGVLEDVTEMVLNFKQLVVRISDLL    
27 RPOA_HELPY/12-  99.0%  31.8%     RVKISLAPFEFGYAVTLAHPIRRLLLLSSVGYAPVGLKIEG------VHHEFDSLRGVTEDVSLFIMNLKNIRFIAKALV    
28 RPOA_CAMJE/12-  98.6%  30.8%     VAKISAWPFEIGYGITLAHPLRRLLYTSTIGYAPTAIHIDG------VAHEFDSMRGMLEDVALFIINLKKLRFKIKG--    
29 RPA5_MOUSE/58-  94.7%  10.7%     TLEFDMVG----IDAAIANAFRRILLARVPTMAVEKVLVYN------------NTSIVQDEILAHRLGLIPILADPRLFE    
30 Q9VMX3/41-329   94.7%  11.8%     GLEFDLIG----VYPAIANAFRRLMLSDVPSMAIEKVYIYN------------NTSIIQDEVLAHRMGLLPLRADPRLFA    
31 Q9UAY9/385-691  95.2%  11.8%     TLEFDITR----IEAPIANALRRVLIAEVPTMALEKIYLYQ------------NTSVIQDEVLCHRLGLLPLRVDPRGFQ    
32 RPC5_YEAST/40-  94.2%  10.2%     EANFDLIN----IDTSIANAFRRIMISEVPSVAAEYVYFFN------------NTSVIQDEVLAHRIGLVPLKVDPDMLT    
33 RPC5_SCHPO/46-  94.7%  11.1%     TMVFEISG----IDASIANAFRRILIAEIPTLAFEFVYIIN------------NTSIIQDEVLSHRIGLVPISADPDMFK    
34 Q39215/74-375   93.7%  10.5%     DMEFDMIG----IDAAFANAFRRILIAEVPSMAIEKVLIAY------------NTSVIIDEVLAHRMGLIPIAADPRLFE    
35 Q39216/81-383   93.7%   9.8%     DMVFDMIG----VHAGIANAFRRILLAELPSMAIEKVYVAN------------NTSVIQDEVLAHRLGLIPIAADPRLFE    
36 Q9U177/108-424  95.2%   9.8%     RMSFEMQN----VSPPIANLLRRVLTTEVPTLAFDRVLIEE------------NDSPVLDELLSHRLGLVPVAGPVMKMH    
37 RPOD_METTH/1-2  93.2%  16.3%     EMVFVVSG----VTVPFINAIRRICMMEVPKLAIEYVNMYR------------NDAKMFDEVLAHRLGLVPLAADPEFAE    
38 RPOD_ARCFU/3-2  92.3%  12.2%     KIKFILKN----ASPALANSFRRAMKAEVPAMAVDYVDIYL------------NSSYFYDEVIAHRLAMLPIKT---YLD    
39 RPOD_HALHA/6-2  90.8%  14.9%     EARFVVRN----ITPAFANGIRRAILVDVPTLSIDTVRFVE------------NSSVMFDEQLGLRLGLVPLTTP-----    
40 RPOD_HALMA/5-2  91.3%  11.6%     EARILVRG----ITPAFANGIRRAMVADVPTFSIDTVRVIE------------NTSVMFNEQIGLRLGLVPLTTDL----    
41 RPOD_THEAC/1-2  95.7%  13.5%     YIRFEIDG----ITPSQANALRRTLINDIPKLAIENVTFHHGEIRDSEGNVYDSSLPLFDEMVAHRLGLIPLKTDL----    
42 RPOD_PYRHO/4-2  91.8%  14.3%     SITFILEG----VSVAFANALRRTILGEVPTFAVDEVEFYE------------NDSALFDEIIAHRLAMIPLKTPT----    
43 RPOD_SULSO/1-2  91.8%  13.2%     RIDLVFEG----YPLEFVNAIRRASMLYVPIMAVDDVYFIE------------NNSPLYDEILAHRLALIPFMSEE-ALD    
44 RPOD_SULAC/1-2  91.8%  13.2%     RLRLVLEN----YPLEFVNSIRRASILYVPVMAVDEVYFIE------------NNSPLYDEILAHRLALVPFVSDE-ALE    
45 RPOD_AERPE/11-  94.2%  14.7%     RVRLRIRG----YPVVFVNAIRRTVLSDVPTMAVDYAYIFD------------NTTAVYDEMVAHRLGLVVLDSNE-AVE    
46 RP3A_ARATH/10-  94.7%  11.4%     YAKFELRE----TDVSMANALRRVMISEVPTVAIDLVEIEV------------NSSVLNDEFIAHRLGLIPLTSERAMSM    
47 S71177/10-299   94.7%  11.4%     YAKFELRE----TDVSMANALRRVMISEVPTMAIHLVKIEV------------NSSVLNDEFIAQRLSLIPLTSERAMSM    
48 337497/7-262    89.9%  12.0%     NVKFIIEN----TDLAVANSIRRVFIAEVPIIAIDWVQIDA------------NSSVLHDEFIAHRLGLIPLISDDIVDK    
49 O97183/7-263    90.3%  11.3%     NVKFVLED----TELSVANSLRRVFIAETPTLAIDWVQLEA------------NSTVLSDEFLAHRIGLIPLISDDVVER    
50 Q93338/7-270    89.9%   9.5%     IIKFVLWD----TDLSVANSLRRVFMAEVPTIAIDWVQIET------------NTSVLHDEFIAHRMGLIPFISDYHVEK    
51 RPB3_YEAST/6-2  91.8%  13.4%     NVDFILSN----VDLAMANSLRRVMIAEIPTLAIDSVEVET------------NTTVLADEFIAHRLGLIPLQSMDIEQ-    
52 Q9P5U3/16-271   91.8%  13.0%     RVKFELSN----TELSFANSLRRVMLAEIPTIAIDLVEIEA------------NSSVLADEFIAHRLGLIPLNAEGIEQ-    
53 RPB3_SCHPO/5-2  91.8%  13.3%     SVDFVLTN----TSLAVANSLRRVVLAEIPTVAIDLVEINV------------NTSVMPDEFLAHRLGMIPLDSSNIDEP    
54 CNJC_TETTH/4-2  94.2%  14.3%     KCEFTLEN----CDISLANSLRRILLAEIETIAIHNVKVYE------------NTSSLPDEYIAHRLGLIPLNSAKVDDY    
   consensus/100%                   ...h.h...........hp.hRRh.h.....hu...h.h..................h.p-....hhthh.h........    
   consensus/90%                    .hph.h.s....hs.shuNshRRhhhsphsshAhp.l.h.t............s..sh.--hhthhhslh.l........    
   consensus/80%                    .hch.lps....hshshuNulRRlhluphPshAlp.l.l.t............s.tsl.--hhthhLslh.lh.p.....    
   consensus/70%                    hschslps....hshsluNulRRllluplPshAlstVpI.s............shpsl.--llthhLsLhslthc.....    

                     cov    pid  81          .         1         .         .         .         .         :         . 160
 1 RPOA_MYCLE/7-2 100.0% 100.0%     ---------------EPVTMY----------LRKQGPGE------VTAGDIVPPA-------------------------    
 2 RPOA_STRCO/7-2 100.0%  84.5%     ---------------EPVVMY----------LRKQGPGL------VTAADIAPPA-------------------------    
 3 RPOA_THETH/9-2  99.5%  51.4%     --------------LQTVTLL----------LKAEGPKE------VKARDFLPVA-------------------------    
 4 RPOA_THEAQ/9-2  99.5%  52.9%     --------------MASTTLI----------LRAEGPKE------VRAGDFTPSA-------------------------    
 5 RPOA_DEIRA/6-2  99.5%  47.1%     ---------------GPKTLT----------LRAQGEGE------VRASAFEVPT-------------------------    
 6 RPOA_XANCP/14-  99.5%  44.8%     --------------GDSATRS----------LSKQGPGT------VTAADIRTDH-------------------------    
 7 RPOA_XYLFA/14-  99.5%  45.8%     --------------GDTATLS----------LFKQGAGV------VTAADIKTDH-------------------------    
 8 RPOA_PASMU/12-  99.5%  45.5%     --------------KDDVFLT----------LNKSGIGP------VVAADITHDG-------------------------    
 9 RPOA_VIBCH/12- 100.0%  46.9%     --------------KDEVFIT----------LNKSGSGP------VVAGDITHDG-------------------------    
10 RPOA_SHEVI/14-  99.5%  47.2%     --------------KDEAMLT----------LSKSGAGP------VTAADITHDG-------------------------    
11 RPOA_SHESP/12-  99.5%  45.3%     --------------KDEALLT----------LTKSGTGP------VLAGDITHDG-------------------------    
12 RPOA_BUCAI/14-  99.5%  44.1%     --------------KDETLLT----------LHKSGIGS------ITAADIIHDG-------------------------    
13 RPOA_PSEAE/14-  99.5%  45.8%     --------------RDEVTLT----------LAKKGSGV------VTAADIQLDH-------------------------    
14 RPOA_BORPE/10-  99.5%  45.8%     --------------RDEVTLV----------LRKNGAGA------VVASDIELPH-------------------------    
15 RPOA_NEIMA/12-  99.5%  45.3%     --------------RSQVQLV----------LKKSGSGV------VSAGDIELPH-------------------------    
16 RPOA_AGRTU/13-  99.5%  51.2%     --------------DDSKRMV----------VRKQGPGS------VTAGDIQTVG-------------------------    
17 RPOA_RICPR/17-  99.5%  43.5%     --------------SEKRIIK----------LKAMGPCV------VTAGMIDTGH-------------------------    
18 RPOA_BACHD/7-2  99.5%  50.7%     --------------DEDKTLE----------IDTQGEGV------VTAGDLTHDS-------------------------    
19 RPOA_BACSU/7-2  99.5%  50.2%     --------------DEEKTLE----------IDVQGEGT------VTAADITHDS-------------------------    
20 BAB43316/7-227  99.5%  48.8%     --------------EEDKTLE----------IDVRDEGE------VTASDITHDS-------------------------    
21 RPOA_CLOPE/7-2  99.5%  49.8%     --------------EGPKTIY----------IDAQGPGV------VTGADIKTDG-------------------------    
22 RPOA_LACLA/7-2  99.5%  44.5%     --------------ESEKQIE----------LDVTGPMD------VTAGDILTDS-------------------------    
23 RPOA_SYNY3/9-2  99.5%  44.0%     --------------DQPQIGR----------LTAIGPGT------VTAAQFEVPS-------------------------    
24 RPOA_THEMA/10-  99.0%  42.3%     --------------KGTIKME----------VEKKGPGE------LVAGDIKTPA-------------------------    
25 RPOA_AQUAE/9-2  99.0%  42.2%     --------------D-VEILY----------LQKKGEGE------VKASDIKTPP-------------------------    
26 RPOA_MYCGE/9-2  99.5%  33.8%     F-------------EDGEMIEPPLERWPVLKVTAEKKGA------VYAKDLECPA-------------------------    
27 RPOA_HELPY/12-  99.0%  31.8%     G-------------QDSSLENQSV----VVDYSFKGPME------LRARDLNSE--------------------------    
28 RPOA_CAMJE/12-  98.6%  30.8%     ---------------DSNKE--------IVEFSFKGSKE------IYGKDLNND--------------------------    
29 RPA5_MOUSE/58-  94.7%  10.7%     YR-------------NQGEEEGTEIDTLQFRLQVRCTRN--PNAAKDSSDPNELYV--NHKVY-------TRHMTWVPLG    
30 Q9VMX3/41-329   94.7%  11.8%     YRT------------EESTEAGTEQDTLEFELKVKCSRR--RDAGKDQSNFDDIYK--NHKVY-------SGHLKWLPKG    
31 Q9UAY9/385-691  95.2%  11.8%     FPKEKVVGINEKGVDCDEEPEGDPAKNLIFKINVSCTKN--RNAVPTATDPKQLYH--NSSVY-------SRAFEWVPIA    
32 RPC5_YEAST/40-  94.2%  10.2%     WVDSN---------LPDDEK-FTDENTIVLSLNVKCTRN--PDAPKGSTDPKELYN--NAHVY-------ARDLKFEPQG    
33 RPC5_SCHPO/46-  94.7%  11.1%     WFQHP---------LPGQEATHTDYDTVVFSLNKKCEFN--KNAATDEKDPKRLYV--NSEVY-------SGDLIWKPQG    
34 Q39215/74-375   93.7%  10.5%     YLS--------------EHDQANEKNNIVFKLHVKCPKNR-PRLKVLTSDLKWLPN--GSELLRESENKTSKPKTYTSFS    
35 Q39216/81-383   93.7%   9.8%     YLS--------------ENDQPNEKNTIVFKLHVKCLKGD-PRRKVLTSELKWLPN--GSELIKESGGSTTTPKTYTSFN    
36 Q9U177/108-424  95.2%   9.8%     YITES---------NQASFSNLDPSRVLLFELDATGAKDA-AVTPVYSGQLQWVPLPGQDKTAGAVAVACQAGREECAGA    
37 RPOD_METTH/1-2  93.2%  16.3%     S--------LKMPEECDC-EEYCSECSVSLTLRKKGPGV------VYSGDLVSE--------------------------    
38 RPOD_ARCFU/3-2  92.3%  12.2%     R--------FNMQSECSCGGEGCPNCQISFRLNVEGPKV------VYSGDFISD--------------------------    
39 RPOD_HALHA/6-2  90.8%  14.9%     -------------EDYPAG-------EVTLALDVEGPGT------AYPGDLVSN--------------------------    
40 RPOD_HALMA/5-2  91.3%  11.6%     -------------DDFEIGD------EVTLSLSVDGPST------AYSSDLVSS--------------------------    
41 RPOD_THEAC/1-2  95.7%  13.5%     T--------MNFRDQCSCGGKGCSLCTVTYSINKLGPST------VFSSDLQAVS-------------------------    
42 RPOD_PYRHO/4-2  91.8%  14.3%     -------------DRFELDALELDDYTVTLSLEAEGPGI------VYSGDLKSD--------------------------    
43 RPOD_SULSO/1-2  91.8%  13.2%     T--------YRWPEECIECTENCEKCYTKIYIEAEAPNE---PRMIYSKDIKSE--------------------------    
44 RPOD_SULAC/1-2  91.8%  13.2%     H--------YRPPEECAECKENCDGCYNRVYLDVEAKDQ---SLMIYSRDLKSE--------------------------    
45 RPOD_AERPE/11-  94.2%  14.7%     K--------YRRPEECAGKEPSEEDCFVEVSLEAEVDAEGETGRYITAGDLSIS--------------------------    
46 RP3A_ARATH/10-  94.7%  11.4%     R--------FSRDCDACDGDGQCEFCSVEFRLSSKCVTD--QTLDVTSRDLYSAD-----------------------PT    
47 S71177/10-299   94.7%  11.4%     R--------FCQDCEDCNGDEHCEFCSVEFPLSAKCVTD--QTLDVTSRDLYSAD-----------------------PT    
48 337497/7-262    89.9%  12.0%     ----------LQYSRDCTCEEFCPECSVEFTLDVRCNED--QTRHVTSRDLISNS-------------------PRVIPV    
49 O97183/7-263    90.3%  11.3%     ----------LQYTRDCICLDFCPECSVEFTLDVKCSEE--QTRHVTTADLKSSN-------------------AKVLPV    
50 Q93338/7-270    89.9%   9.5%     ----------MQYTRDCECAEFCDECSIPFILQMKCKDE--ATLAVTTEHLMPMHN----------------LDTTVRPA    
51 RPB3_YEAST/6-2  91.8%  13.4%     ----------LEYSRDCFCEDHCDKCSVVLTLQAFGESE--STTNVYSKDLVIVS-----------------------NL    
52 Q9P5U3/16-271   91.8%  13.0%     ----------LLYSRDCDCDEYCEHCSVTLNLHAKCTGD--DIMQVCARDLVPVG-----------------------DR    
53 RPB3_SCHPO/5-2  91.8%  13.3%     PPV------GLEYTRNCDCDQYCPKCSVELFLNAKCTGE--GTMEIYARDLVVSS-----------------------NS    
54 CNJC_TETTH/4-2  94.2%  14.3%     N-----------YIWNCNCQGECDRCTIHFDLRVSNFTN--EVLEVTSLDLKQRQD----------------HTDEDAVR    
   consensus/100%                   ...............................h................................................    
   consensus/90%                    ...............................lphps.t.......hhstch.............................    
   consensus/80%                    ...............tt.h............lphps.t.......lhutDl.............................    
   consensus/70%                    ..............psptt.t..........Lphpssst......VhusDlp.s..........................    

                     cov    pid 161          .         .         .         2         .         .         .         . 240
 1 RPOA_MYCLE/7-2 100.0% 100.0%     -------------GVTLHNPGMRIATLNDKGK-IEAELVVERGRGYVPAV---QNRALGAEIGRIPVDSIYSPVLKVTYK    
 2 RPOA_STRCO/7-2 100.0%  84.5%     -------------GVEVHNPDLVLATLNGKGK-LEMELTVERGRGYVSAV---QNKQVGQEIGRIPVDSIYSPVLKVTYK    
 3 RPOA_THETH/9-2  99.5%  51.4%     -------------DVEIMNPDLHIATLEEGGR-LNMEVRVDRGVGYVPAE---KHG-IKDRINAIPVDAVFSPVRRVAFQ    
 4 RPOA_THEAQ/9-2  99.5%  52.9%     -------------DVEIMNPDLHIATLEEGGK-LYMEVRVDRGVGYVPAE---RHG-IKDRINAIPVDAIFSPVRRVAFQ    
 5 RPOA_DEIRA/6-2  99.5%  47.1%     -------------DAEIVNPDLVIANLAEDGK-LVMEVRVEEGEGYVSAD---KHA-TKDRINSIPVDAMFSPVRRVAYH    
 6 RPOA_XANCP/14-  99.5%  44.8%     -------------NVEIINGDHVICHLTKDTA-LNMRLKIERGFGYQPAAARRRPDEETRTIGRLMLDASFSPVRRVAYA    
 7 RPOA_XYLFA/14-  99.5%  45.8%     -------------NVEIINDGHVICHLTKDTT-INMRLKIERGFGYQPAVVRRRPDDENRTIGRLILDASFSPVRRVAYV    
 8 RPOA_PASMU/12-  99.5%  45.5%     -------------DVEIVNPEHVICHLTDESASINMRIRVQRGRGYVPASARVHAQDEERPIGRLLVDACYSPVDRIAYN    
 9 RPOA_VIBCH/12- 100.0%  46.9%     -------------DVEIVNPEHVICHLTSDNAAIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDATFSPVDKIAYS    
10 RPOA_SHEVI/14-  99.5%  47.2%     -------------DVTIMNPEHVVCHLTGNNE-ISMRIRVERGRGYVPASARAQTEDDDRPIGRLLVDASFSPVARIAYN    
11 RPOA_SHESP/12-  99.5%  45.3%     -------------DVEIINPEHVIRNLTGQAD-ISMRIRVAKGRGYVPASTRIQSDDEERPIGRLLVDAAFSPVSRIAYN    
12 RPOA_BUCAI/14-  99.5%  44.1%     -------------DVEIIKPQHVICHLTDENASIKMRIKVQRGRGYIPASSRVHLEEDSRPIGCLLVDACYSPINRISYN    
13 RPOA_PSEAE/14-  99.5%  45.8%     -------------DVEIINGDHVIANLADNGA-LNMKLKVARGRGYEPADARQSDEDESRSIGRLQLDASFSPVRRVSYV    
14 RPOA_BORPE/10-  99.5%  45.8%     -------------DVEIINPDHLICNLTDAGK-IEMQVKVEKGRGYVPGNVRALSEDRTHTIGRIVLDASFSPVRRVSYA    
15 RPOA_NEIMA/12-  99.5%  45.3%     -------------DVEILNPGHVICHLADNGQ-IEMEIKVEQGRGYQSVSGRQVVRDENRQIGAIQLDASFSPISRVSFE    
16 RPOA_AGRTU/13-  99.5%  51.2%     -------------DIEILNPDHVICTLDEGAE-IRMEFTVNNGKGYVPAE---RNRAEDAPIGLIPVDSLYSPVKKVSYK    
17 RPOA_RICPR/17-  99.5%  43.5%     -------------DVEILNPDHVICNLAKNKQ-LEMELTCKVGKGYVLST---NSYEDNLPIGEIAIDALFNPVKSVTYK    
18 RPOA_BACHD/7-2  99.5%  50.7%     -------------DVDVLNPDLHIATLTTGAH-LRMRITAKRGRGYVPAE---GNKSDELAIGVIPIDSIYTPVSRVNYQ    
19 RPOA_BACSU/7-2  99.5%  50.2%     -------------DVEILNPDLHIATLGENAS-FRVRLTAQRGRGYTPAD---ANKRDDQPIGVIPIDSIYTPVSRVSYQ    
20 BAB43316/7-227  99.5%  48.8%     -------------DVEILNPELKIATVSKGGH-LKIRLVANKGRGYALAE---QNNTSDLPIGVIPVDSLYSPVERVNYT    
21 RPOA_CLOPE/7-2  99.5%  49.8%     -------------DVEVVNKDLHIATLDNDGK-LYMEIVVNRGRGYVTQN---KNKTEDLPLSAIAIDSIYTPVKRVNFS    
22 RPOA_LACLA/7-2  99.5%  44.5%     -------------DIEIVNKDHYLFSIAEGHS-MRAVMTVKKGYGYVPDD---ENKVDGAPIGTIAVDSIYTPVSKVNYQ    
23 RPOA_SYNY3/9-2  99.5%  44.0%     -------------EVEVIDPNQYIATLAEGAK-LEMEFRVERGVGYRVIE---RGKDENSSLDFLQIDSVFMPVTKVNYT    
24 RPOA_THEMA/10-  99.0%  42.3%     -------------GIEVVNPDLHIATLN-SKADLFFEVYAEVGKGFVPVS----EREERPDVGWIPIDGVFSPVIKVNFL    
25 RPOA_AQUAE/9-2  99.0%  42.2%     -------------NVEILNPDQYIATITDPNKELNIEIRVERGRGYVPVE----EMEAIGEVGWILVDADFSPVKKVGFR    
26 RPOA_MYCGE/9-2  99.5%  33.8%     -------------GFEVINKDLYLFSLQKDMK-LTVSVYVKQGRGFTSFL--ENR-ELINSLGIIATDANFSPVLHCGYE    
27 RPOA_HELPY/12-  99.0%  31.8%     -------------QIEIVNPEMPLATINEDAQ-LNFSLIIYKGMGYVPSE---NTRELMPEG-YMPLDGSFTPIKKVVYE    
28 RPOA_CAMJE/12-  98.6%  30.8%     -------------QVEVVNKDAYLATINEDAE-LKFTLIVEKGIGYVPSE---EIKELINDPKFIALDAFFTPVREATYD    
29 RPA5_MOUSE/58-  94.7%  10.7%     NQAD---VFPEGTIR-PVHDDILIAQLRPGQE-IDLMMHCVKGIGKDHAKFSPVATASYRLLPAITLLEPVEGEAAEELS    
30 Q9VMX3/41-329   94.7%  11.8%     KQAQ---IYSESAVN-CIHDDILIAQLRPGHE-LDLRLVAVKGLGRDHAKFSPVATATYRLLPMIKLNREVTGKDAYLLQ    
31 Q9UAY9/385-691  95.2%  11.8%     DQKT---QFTEEAHPRMVSDDILVAKLRPGQE-IEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNAEISGEAAERLK    
32 RPC5_YEAST/40-  94.2%  10.2%     RQST---TFADCPVV-PADPDILLAKLRPGQE-ISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQPIKGESARRFQ    
33 RPC5_SCHPO/46-  94.7%  11.1%     RQEE---RFADNPIR-VVNPDIVVAKLRPGQE-IDLEAHAILGIGQDHAKFSPVATASYRLLPTIHILSPIEGEDAVKFQ    
34 Q39215/74-375   93.7%  10.5%     CSQDSLPEFANNPIT-PCDLDILIAKLAPGQE-IELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLV    
35 Q39216/81-383   93.7%   9.8%     HSQDSFPEFAENPIR-PTLKDILIAKLGPGQE-IELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLLKEFEGKHAEELV    
36 Q9U177/108-424  95.2%   9.8%     AGATDHSADEDDDAVFLVHPDILLTKLGPGQR-IKLKAIAVKGFGAVHAKWSPVSACYYEMKTSVELCERLTGSAAEALI    
37 RPOD_METTH/1-2  93.2%  16.3%     -----------TPAVKPVYPDIPLVKLGDDDE-LELEAVAQLGVGREHAKWEPTTACAYKY--YPRIEFSEDCDECLECI    
38 RPOD_ARCFU/3-2  92.3%  12.2%     -----------DPDVVFAIDNIPVLELFEGQQ-LMLEAVARLGTGREHAKFQPVSVCVYKI--IPEIVVNENCNGCGDCI    
39 RPOD_HALHA/6-2  90.8%  14.9%     -----------DPEVEAADENIPIIELKDDQR-LELEADAVDGHGRDHAKHQGGVAVGYRHLQLQRVHVVGDSPEYADDD    
40 RPOD_HALMA/5-2  91.3%  11.6%     -----------DPMVEAADDNIPIIDLKEGQR-LEVEADAVLDTGREHAKHQGGVAVGYRH--LQQVEVVGDLGEFEDDD    
41 RPOD_THEAC/1-2  95.7%  13.5%     -----------HPDLIPVDGEIPIVKLGPKQA-ILITAEAILGTAKEHAKWQVTSGVSYKYHREFHVSKK-DFEDWQKLK    
42 RPOD_PYRHO/4-2  91.8%  14.3%     -----------DPDVKPVTPDIPIVKLAKGQR-LVFNAYAKLGRGKDHAKWQPGFTY-YKY--FTRVHISKKINGWEKLA    
43 RPOD_SULSO/1-2  91.8%  13.2%     -----------DPSVVPISGDIPIVLLGTNQK-ISLEARLRLGYGKEHAKFIPVSLSVVRYYPKVEILAN-----CEKAV    
44 RPOD_SULAC/1-2  91.8%  13.2%     -----------DQMITPVSGAIPIVLLGSKQK-ISLEARLRLGYGKEHIKYSPVSVSIVRYYPKVTVLGN-----CEKAV    
45 RPOD_AERPE/11-  94.2%  14.7%     -----------DPQVKPVYPETPLIYVAPGQR-IHVQAFARLGRGKEHTKWSPASLSVLRYTPILIYDSSKAGDECLECL    
46 RP3A_ARATH/10-  94.7%  11.4%     VTPVDFTIDSSVSDSSE-HKGIIIVKLRRGQE-LKLRAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEK    
47 S71177/10-299   94.7%  11.4%     VTPVDFTSNSSTSDSSE-HKGIIIAKLRRGQE-LKLKALARKGIGKDHAKWSPAATVTYMYEPDIIINEEMMNTLTDEEK    
48 337497/7-262    89.9%  12.0%     TS---RNRDNDPNDYVE-QDDILIVKLRKGQE-LRLRAYAKKGFGKEHAKWNPTAGVAFEYDP----DNALRTTVYPKPE    
49 O97183/7-263    90.3%  11.3%     TS---RNQGEEDNEYGESNDEILIIKLRKGQE-LKLRAYAKKGFGKEHAKWNPTAGVCFEYDP----DNSMRHTLYPKPD    
50 Q93338/7-270    89.9%   9.5%     CGKALRERGSTRDEFHN-REEILIVKLRKGQE-LNLKAYVKKGFGKEHAKWNPTCGVAFEYDP----DNALRHTIYPNVE    
51 RPB3_YEAST/6-2  91.8%  13.4%     MG---RNIGHPIIQDKE-GNGVLICKLRKGQE-LKLTCVAKKGIAKEHAKWGPAAAIEFEYDP----WNKLKHTDYWYEQ    
52 Q9P5U3/16-271   91.8%  13.0%     VN---QVLGSPIINDPE-GQGPLILKLRHGQE-IKLQCIAKKGIAKEHSKWAPSAAIGFEYDP----HNKLHHLDLWYEQ    
53 RPB3_SCHPO/5-2  91.8%  13.3%     S------LGHPILADPK-SRGPLICKLRKEQE-ISLRCIAKKGIAKEHAKWSPTSAVAFEYDP----WNKLQHTDYWFEN    
54 CNJC_TETTH/4-2  94.2%  14.3%     PIKVYSILRDEYGNKRE--VGIPIIKLSKGQQ-IHFECEAQKGIGKMHSKWNPVCISTFSVEPEIIFDQEIQNLDIEQKK    
   consensus/100%                   ....................t..lh.l....t.h.h.h.h..s.u...................................    
   consensus/90%                    ..................t.th.lhplt.ttt.l.hphhs.hGhGh..sp..................t.ht...h.t..    
   consensus/80%                    .............th..hp.ph.lspLt.stp.lphphhs.hGhGh..up....st...t..s.h.lpt.hps..h.th.    
   consensus/70%                    .............ssp.hss-hhIspLtpstc.lphchhspcGhGh..Ac...tsttthp.hshl.lcs.hpsstththp    

                     cov    pid 241          :         .         .         .         .         3         .         . 320
 1 RPOA_MYCLE/7-2 100.0% 100.0%     VDATRVEQRTD---------------------------------------------------FDKLILDVETKSSITPRD    
 2 RPOA_STRCO/7-2 100.0%  84.5%     VEATRVEQRTD---------------------------------------------------FDKLIVDVETKQAMRPRD    
 3 RPOA_THETH/9-2  99.5%  51.4%     VEDTRLGQRTD---------------------------------------------------LDKLTLRIWTDGSVTPLE    
 4 RPOA_THEAQ/9-2  99.5%  52.9%     VEDTRLGQRTD---------------------------------------------------LDKLTLRIWTDGSVTPLE    
 5 RPOA_DEIRA/6-2  99.5%  47.1%     VENTRVGQQTD---------------------------------------------------LDRLILRVWTDGSAGPQE    
 6 RPOA_XANCP/14-  99.5%  44.8%     VEAARVEQRTD---------------------------------------------------LDKLVIDIETNGTIDAEE    
 7 RPOA_XYLFA/14-  99.5%  45.8%     VEAARVEQRTD---------------------------------------------------LDKLIIDIETNGTIDAEE    
 8 RPOA_PASMU/12-  99.5%  45.5%     VEAARVEQRTD---------------------------------------------------LDKLVIELETNGTIDPEE    
 9 RPOA_VIBCH/12- 100.0%  46.9%     VEAARVEQRTD---------------------------------------------------LDKLVIDMETNGTLEPEE    
10 RPOA_SHEVI/14-  99.5%  47.2%     VEAARVEQRTD---------------------------------------------------LDKLVIDMTTNGTLDPEE    
11 RPOA_SHESP/12-  99.5%  45.3%     VESARVEQRTN---------------------------------------------------LDKLVIDMETNGTLDPEE    
12 RPOA_BUCAI/14-  99.5%  44.1%     VEAARVEQRTD---------------------------------------------------LDKLVIEMETNGTIDPEE    
13 RPOA_PSEAE/14-  99.5%  45.8%     VENARVEQRTN---------------------------------------------------LDKLVLDLETNGTLDPEE    
14 RPOA_BORPE/10-  99.5%  45.8%     VESARVEQRTD---------------------------------------------------LDKLVLDIETNGVISPEE    
15 RPOA_NEIMA/12-  99.5%  45.3%     VEPARVEQRTD---------------------------------------------------LDKLVLDIETDGSIDPEE    
16 RPOA_AGRTU/13-  99.5%  51.2%     VENTREGQVLD---------------------------------------------------YDKLIMTIETNGSVSGED    
17 RPOA_RICPR/17-  99.5%  43.5%     VENTRVGQVTD---------------------------------------------------YDKLIMFVETNGDVLPEM    
18 RPOA_BACHD/7-2  99.5%  50.7%     VENTRVGQVTN---------------------------------------------------YDKLTLDVWTDGSIRPEE    
19 RPOA_BACSU/7-2  99.5%  50.2%     VENTRVGQVAN---------------------------------------------------YDKLTLDVWTDGSTGPKE    
20 BAB43316/7-227  99.5%  48.8%     VENTRVGQSSD---------------------------------------------------FDKLTLDVWTNGSITPQE    
21 RPOA_CLOPE/7-2  99.5%  49.8%     VQNTRVGQITD---------------------------------------------------YDKLTLEIWTNGTIRIEE    
22 RPOA_LACLA/7-2  99.5%  44.5%     VEPARVGGDSS---------------------------------------------------YDKLTLEITTNGTIVSDE    
23 RPOA_SYNY3/9-2  99.5%  44.0%     VEDIRADGMSP---------------------------------------------------KDRLILDIWTNGSIQPRE    
24 RPOA_THEMA/10-  99.0%  42.3%     TENVRVGKRTD---------------------------------------------------YDKLILEIWTKKSIRPEE    
25 RPOA_AQUAE/9-2  99.0%  42.2%     VDNVRVGKKST---------------------------------------------------YERLTLEIFTNGIKTPDQ    
26 RPOA_MYCGE/9-2  99.5%  33.8%     VQEVKTSKQKL---------------------------------------------------TDHLTFKIATNGAIKAVD    
27 RPOA_HELPY/12-  99.0%  31.8%     IENVLVEGDPN---------------------------------------------------YEKIIFDIETDGQIDPYK    
28 RPOA_CAMJE/12-  98.6%  30.8%     IEKVLFEDNPD---------------------------------------------------YEKVVLTVTTDGQITPNE    
29 RPA5_MOUSE/58-  94.7%  10.7%     QCFSPGVIEVEEVQG------KKVARVANARLDTFSREIFRH--------EKLKKAVRLARVRDHYIFSVESTGVLPPDV    
30 Q9VMX3/41-329   94.7%  11.8%     NCFSPGVIGIDENE---------TAYVKDARYDTCSRNVYRY--------PQLNDAVTLARIRDHYIFSVESVGALKPDV    
31 Q9UAY9/385-691  95.2%  11.8%     SVFSEGVIAIEKKGA------KRIAVVKDARKDTCSRNVFRH--------EDLSKVVQLGKNKQHFIFSVESTGALKSSE    
32 RPC5_YEAST/40-  94.2%  10.2%     KCFPPGVIGIDEGSD--------EAYVKDARKDTVSREVLRY--------EEFADKVKLGRVRNHFIFNVESAGAMTPEE    
33 RPC5_SCHPO/46-  94.7%  11.1%     KCFPKGVIELEEGPDG-----KKQARVADVRKDTVSRECLRH--------PEFADKVQLGRVRDHYLFSVESTGIMKPDV    
34 Q39215/74-375   93.7%  10.5%     NVCPQNVFDIEDMGKG-----KKRATVAQPRKCTLCKECVRD--------DDLVDHVDLGSVKNHFIFNIESTGSLPPEV    
35 Q39216/81-383   93.7%   9.8%     KVCPKKVFDIEDMGQG-----RKRATVARPRDCSLCRECIRDG-------VEWEDQVDLRRVKNHFIFTIESTGSQPPEV    
36 Q9U177/108-424  95.2%   9.8%     KSCPAGVFGYEGGQR------GAAATVVAPEKCTLCRECLRSEDKGAEAAANKGDRVRVQKDKTHVLFHIESVGQLHPAQ    
37 RPOD_METTH/1-2  93.2%  16.3%     EACPRDVLGEE----------SGKPVVVDLENCSMCKSCVRACD---------KRAIDVGYEEGKFIFRIETDGSVDPKD    
38 RPOD_ARCFU/3-2  92.3%  12.2%     EACPRNVFEKD----------GDKVRVKNVMACSMCGECVEVCE---------MNAISVN-ETNNFLFTVEGTGALPVRE    
39 RPOD_HALHA/6-2  90.8%  14.9%     PQMLRGVIEE-----------DDELVPTDDFDN-DLTTRYPGKE---------VEIEDVD---GAFVFHVESDGSMPVEE    
40 RPOD_HALMA/5-2  91.3%  11.6%     PNILRGVIEEQAAEHAAGDATNGELVATDEFDN-DLRNRYPGKD---------VEVSDVP---NAFVFHVETDGSFTTEE    
41 RPOD_THEAC/1-2  95.7%  13.5%     GACPKSVMSET----------DTEIVFTDDFGCNDLNVLFESDG---------VNMIEDD---SRFIFQFETDGSLTAKE    
42 RPOD_PYRHO/4-2  91.8%  14.3%     KLAKKRGLPTKE---------NEEEVIVETIKPFYIPKEFEEYE---------GKEIWEEIVPDTYVFVVETNGELPVEE    
43 RPOD_SULSO/1-2  91.8%  13.2%     NVCPEGVFELKDG----------KLSVKNELSCTLCEECLR-YC---------NGSIRISFVEDKYILEIESVGSLKPER    
44 RPOD_SULAC/1-2  91.8%  13.2%     EVCPEGVFAMENN----------KLVVKNELSCILCEECLK-YC---------AGSVSIESVENKFILEIESVGSLKPER    
45 RPOD_AERPE/11-  94.2%  14.7%     SAYPQVVEALKSGG-------KGSLVLEGLRRTSGLRYCAETAC---------RGAVEVRYDSSNLDLEVESTGALRPEK    
46 RP3A_ARATH/10-  94.7%  11.4%     IDLIESSPTKVFGMDPVTRQVVVVDPEAYTYDEEVIKKAEAMGK---------PGLIEISPKDDSFIFTVESTGAVKASQ    
47 S71177/10-299   94.7%  11.4%     IDLIESSPTKVFGIDPVTGQVVVVDPEAYTYDEEVIKKAEAMGK---------PGLIEIHPKHDSFVLSVHSTGALKASQ    
48 337497/7-262    89.9%  12.0%     ----EWPKS-----------------EYSELDED--ESQAPYD---------------PNGKPERFYYNVESCGSLRPET    
49 O97183/7-263    90.3%  11.3%     ----EWPKS-----------------EHTELEDD--QYEAPYN---------------WEAKPNKFFFNVESAGALKPEN    
50 Q93338/7-270    89.9%   9.5%     ----EWPRS-----------------DHSSLPEDSTEKEAPFE---------------PDNKPNKFWFSIEGTGALPAQR    
51 RPB3_YEAST/6-2  91.8%  13.4%     DSAKEWPQS-----------------KNCEYEDPP-NEGDPFD---------------YKAQADTFYMNVESVGSIPVDQ    
52 Q9P5U3/16-271   91.8%  13.0%     DPKKEWPPS-----------------EYADWEEPP-QEGEPFD---------------YDAVPQRFYYNVETAGPIPPDA    
53 RPB3_SCHPO/5-2  91.8%  13.3%     DADAEWPKS-----------------KNADWEEPP-REGEPFN---------------FQEEPRRFYMDVESVGSIPPNE    
54 CNJC_TETTH/4-2  94.2%  14.3%     ALVNACPTKVFGINPHTNTLEVQDHMKCMYCEECVYKCAEDFQK---------PKLIKIDHKKDKFFFKVETTGVMKPVE    
   consensus/100%                   ...............................................................tth.h.h.s.t......    
   consensus/90%                    ....t..........................................................pphhhpl.osG.h.st.    
   consensus/80%                    ....ch..t......................................................s+hhhpltosGsl.spp    
   consensus/70%                    spsscss.php...................................................h-+hhhplEosGslpPcc    

                     cov    pid 321          .        ] 339
 1 RPOA_MYCLE/7-2 100.0% 100.0%     ALASAGKTLVELFGLARE-    
 2 RPOA_STRCO/7-2 100.0%  84.5%     AMASAGKTLVELFGLARE-    
 3 RPOA_THETH/9-2  99.5%  51.4%     ALNQAVEILREHLTYFSNP    
 4 RPOA_THEAQ/9-2  99.5%  52.9%     ALNQAVAILKEHLNYFANP    
 5 RPOA_DEIRA/6-2  99.5%  47.1%     ALDKAVEILRDELSVFGNV    
 6 RPOA_XANCP/14-  99.5%  44.8%     AVRTAADILSDQLSVFGDF    
 7 RPOA_XYLFA/14-  99.5%  45.8%     ALRTAADILTDQLSVFGDF    
 8 RPOA_PASMU/12-  99.5%  45.5%     AIRRAATILAEQLDAFVDL    
 9 RPOA_VIBCH/12- 100.0%  46.9%     AIRRAATILAEQLDAFVDL    
10 RPOA_SHEVI/14-  99.5%  47.2%     AIRRAATILAEQLDAFVEL    
11 RPOA_SHESP/12-  99.5%  45.3%     AIRRAATILAEQLDAFVDL    
12 RPOA_BUCAI/14-  99.5%  44.1%     AIRRAATILAEQLEAFVDL    
13 RPOA_PSEAE/14-  99.5%  45.8%     AIRRAATILQQQLAAFVDL    
14 RPOA_BORPE/10-  99.5%  45.8%     AVRQAARILMDQISVFAAL    
15 RPOA_NEIMA/12-  99.5%  45.3%     AVRSAARILIDQMSIFADL    
16 RPOA_AGRTU/13-  99.5%  51.2%     AVAFAARILQDQLGVFVNF    
17 RPOA_RICPR/17-  99.5%  43.5%     AVGLAARILQEQLQLFIAF    
18 RPOA_BACHD/7-2  99.5%  50.7%     AVSLGAKILTEHLNIFVGL    
19 RPOA_BACSU/7-2  99.5%  50.2%     AIALGSKILTEHLNIFVGL    
20 BAB43316/7-227  99.5%  48.8%     SVSLAAKIMTEHLNIFVGL    
21 RPOA_CLOPE/7-2  99.5%  49.8%     AISLSAKILIEHFKLFMTL    
22 RPOA_LACLA/7-2  99.5%  44.5%     ALSLSAKILTDHLNLFVDL    
23 RPOA_SYNY3/9-2  99.5%  44.0%     ALSEASDIIANLFIPLKDL    
24 RPOA_THEMA/10-  99.0%  42.3%     ALRKAADILINHFKIVTEG    
25 RPOA_AQUAE/9-2  99.0%  42.2%     CMQEAIEILKKHYELLENI    
26 RPOA_MYCGE/9-2  99.5%  33.8%     AFAMAAKILIEHLNPIVSV    
27 RPOA_HELPY/12-  99.0%  31.8%     AFLSAVKVMSKQLGVFGER    
28 RPOA_CAMJE/12-  98.6%  30.8%     AFQNALEAMYKQLSVFDKI    
29 RPA5_MOUSE/58-  94.7%  10.7%     LVSEAIKILMGKCRRFLDE    
30 Q9VMX3/41-329   94.7%  11.8%     IFLEAVKVLKRKCRALIDE    
31 Q9UAY9/385-691  95.2%  11.8%     LVVEACKVMEIKCRSLRKQ    
32 RPC5_YEAST/40-  94.2%  10.2%     IFFKSVRILKNKAEYLKNC    
33 RPC5_SCHPO/46-  94.7%  11.1%     LFIKSIAVLKSKCLAVKSS    
34 Q39215/74-375   93.7%  10.5%     LFTEAVKILEAKCEAITDF    
35 Q39216/81-383   93.7%   9.8%     LFNEAVKILEDKCERVISE    
36 Q9U177/108-424  95.2%   9.8%     ILRFGLRLFAERCRALAEM    
37 RPOD_METTH/1-2  93.2%  16.3%     VLLKACDILRDKAEQVITF    
38 RPOD_ARCFU/3-2  92.3%  12.2%     VMKKALEILRSKAEEMNKI    
39 RPOD_HALHA/6-2  90.8%  14.9%     LVLRAVDTLVDRADELEQA    
40 RPOD_HALMA/5-2  91.3%  11.6%     LVLRAVETLRDRATELKDA    
41 RPOD_THEAC/1-2  95.7%  13.5%     TLLYALNRLKDRWDILVES    
42 RPOD_PYRHO/4-2  91.8%  14.3%     IVKIALRILMRKADRFINE    
43 RPOD_SULSO/1-2  91.8%  13.2%     ILLEAGKSIIRKIEELEKK    
44 RPOD_SULAC/1-2  91.8%  13.2%     ILIEASKSLLRKLSELKSK    
45 RPOD_AERPE/11-  94.2%  14.7%     IVELAIRELEEKVKRFAEA    
46 RP3A_ARATH/10-  94.7%  11.4%     LVLNAIDLLKQKLDAVRLS    
47 S71177/10-299   94.7%  11.4%     LVLNAIDILKQKLDAIRLS    
48 337497/7-262    89.9%  12.0%     IVLSALSGLKKKLSDLQTQ    
49 O97183/7-263    90.3%  11.3%     IVVMGVQVLKNKLSNLQTQ    
50 Q93338/7-270    89.9%   9.5%     IVTMGIGILKRKLEELNMA    
51 RPB3_YEAST/6-2  91.8%  13.4%     VVVRGIDTLQKKVASILLA    
52 Q9P5U3/16-271   91.8%  13.0%     IVTEGIKVIQQKLAGLIHE    
53 RPB3_SCHPO/5-2  91.8%  13.3%     IMVQGLRILQEKLAVLVRD    
54 CNJC_TETTH/4-2  94.2%  14.3%     VLRRGFSTLRQKLDFMREQ    
   consensus/100%                   .h..u.t.h...h..h...    
   consensus/90%                    hh..uhphl.ppht.h.t.    
   consensus/80%                    hh..uhphL.pphp.hhp.    
   consensus/70%                    hlhpAhclLtcphphhhp.