Family alignment for the RTC4 domain, displayed in

                                              cov    pid   1 [        .         .         .         .         :         .         .         . 80 
 1 4952.Q6CI81_from_293_to_428             100.0% 100.0%     ILPLL-----------------------KAGGGDNHVFYKDITDYFSSPGARRAANTTQLMYLGGRRYTTGYYSELFAHE    
 2 644223.PAS_chr2-2_0300_from_172_to_296   91.2%  14.6%     IL----------------------------NGSK-PSYFYSLAYEVSKSSKNRVLTKNVLENIDMTKFEVGYLGMKRAGI    
 3 4929.A5DJD0_from_222_to_345              91.2%  12.5%     VL----------------------------TQKK-GSSFYNSAKNISNQSLHDTMTSKEKSEIDWTIFYGGYYGLKRQLF    
 4 36914.A5E2D6_from_263_to_387             91.9%  16.9%     IL----------------------------AGKVSPSIYYEMAKNQCRKSLHEIMSASDIRRIDWKAFYSGYYGHERQSI    
 5 573826.CD36_51500_from_215_to_339        91.9%  17.6%     IL----------------------------GGKLSTSIFYEYAKAQKMKSEHETMSTSDKWRIKWEKYCGGYYGFQRQSI    
 6 4959.Q6BPQ2_from_258_to_382              91.9%  16.9%     IL----------------------------KGKLETSIFYDMAKSISESSSHETMTHKEKWKINWQEFFGGYYGFKRQSF    
 7 4924.PICST_33482_from_216_to_339         91.2%  16.9%     IL----------------------------KGKQAPSAYYLLAKNQANSSVHETLSATEKWQINWDKFCGGYYGFKRQSL    
 8 28985.Q6CUR6_from_212_to_334             89.7%  21.9%     IL----------------------------TGKV-SSLYYSMAKTVQKNSKRQVITNEELRDLNILKFTAGYFGSRRQAI    
 9 559307.ZYRO0F16126g_from_143_to_272      89.7%  13.9%     MY----------------------------RGLV-DSHYKFEANEMRQSSQRAILSVQEFRNMDLTKFTAGYYGMKRQFQ    
10 4932.YNL254C_from_216_to_365             89.7%  12.2%     IL----------------------------EGKI-SSVYYFEAKNAFKNSQKAYLSVDEFRKLNLNKFTAGFYGLKRQLR    
11 436907.A7TF50_from_212_to_350            89.7%  13.7%     LL----------------------------KGKL-QSVYYDSAKQAFLNSERAILSAHEFRALDLKKFQAGYYGLRRQLC    
12 559295.KLTH0F02926g_from_219_to_341      89.7%  16.8%     IL----------------------------SGQH-PSMYYDHARSAFKRSRRAVLSIDEFRRLDLSLFTAGYYGVRRQMR    
13 33169.AGOS_AFR632C_from_201_to_323       89.7%  16.1%     IL----------------------------RGER-PSMYYDNARKAYQKSSRALLSVEEFRQLDLKTFTAGYFGIKRQIR    
14 29883.JGI323636_from_597_to_736          91.9%  19.2%     LINDRDDN------------DGGEFFWATGGPRSKCVFWRDVVSEVKQKGSRAVAGVRG-QFSNFEKTQPGYYGELGSVI    
15 104341.JGI96066_from_527_to_671          91.9%  17.9%     IVDDIDEDFLPGASRKEEYEEDGEY---ADRPRKGSVFWRDVVKSVRKKGSRQTAGVAG-QFASFDKTQPGYYGELGYMI    
16 222929.C5PC98_from_4_to_95               67.6%  14.7%     IY----------------------------QRPQ---HWAS------------------------------YYGPRGDEL    
17 51453.JGI22589_from_356_to_471           85.3%  19.9%     II----------------------------NGG--ASHYRAALADKIELGQERTAKKQG-------NMIPGYYGPRGFNA    
18 5518.FG01264.1_from_447_to_562           85.3%  18.4%     IV----------------------------DGK--ESHYRNIHAEKVQTGQARSLKKEG-------DLNPGYYGPRGCKV    
19 665079.A7EXG2_from_383_to_499            86.0%  22.1%     LI----------------------------SGA--SCHSRDKLDEKIRTGKDRNLMKTT------TNLTPGYYGSRGLRL    
20 332648.A6S3Q4_from_437_to_553            86.0%  22.1%     II----------------------------GGA--TCHYREVFDEKVKAGKDRNLMKSS------TNLIPGYYGSRGLRL    
21 5141.NCU08376.1_from_343_to_465          86.0%  20.4%     IL----------------------------NGG--KSYYANALSDKIKSGQNKTLLKSE------GNLTPGYYGMRGLRL    
22 148305.A4R0N2_from_351_to_468            86.8%  19.9%     VL----------------------------EAKT-KSHYRDALSNKVRSGKGRTLLTSQ------TSLTPGYYGFRGLRL    
23 222929.C5P1E6_from_356_to_478            90.4%  19.9%     IL----------------------------TRKK-PSFFRNFLESS-NTGNSKKDNFRLTANSQFEMMSSGYYGPRGARL    
24 500485.B6H899_from_442_to_565            91.2%  22.1%     LL----------------------------VPGA-FSYYRNILSTSFVPGKARNSRVRMSDGERLETMTCGYYGTMGATK    
25 5061.CADANGAP00013773_from_353_to_420    50.0%  11.2%     IM----------------------------VPES-ASFYRNSLDTALKTGQAKNFRLSL-DGDGLEKISCGYYGTRGAGK    
26 162425.CADANIAP00004656_from_336_to_458  90.4%  15.4%     LM----------------------------VPDN-SSYYRNYLKSMLKDGKAKNFALKF-EGDALEALSCGYYGTRGSER    
27 5059.CADAFLAP00002219_from_365_to_487    90.4%  20.6%     LL----------------------------VPDS-RSYYRNILDSTLKAGKAKNFRLTL-EGDGLETISCGYYGTRGSGK    
28 5085.CADAFUAP00008766_from_377_to_499    90.4%  19.9%     IL----------------------------VPEG-NSYYRNVLDTMLKSGKAKNFRLTL-AGDALETICCGYYGTRGANK    
   consensus/100%                                            hh.....................................h...............................ahu..h...    
   consensus/90%                                             lh..............................t...shah..htt....u.tt....p.........h.sGYaG.ht..h    
   consensus/80%                                             ll............................tst...shahp.hpp..ptuptt.hthp.......pth.sGYYG.ct..h    
   consensus/70%                                             ll............................tsp..sShahshhpphhppupppshphpt....thpphpsGYYG.+ttth    

                                              cov    pid  81          .         1         .         .         .         .         :         . 160
 1 4952.Q6CI81_from_293_to_428             100.0% 100.0%     LNKHMTNSGLAQDFEHHVRSNPELHSMIIRPGLLFHFQTAICIPETVIRLIMDDQ------KVS----YEE---------    
 2 644223.PAS_chr2-2_0300_from_172_to_296   91.2%  14.6%     ISDFIRS-----KYRTLLSELGKSNPVIQFWSVD-MFVTCALTPEVISRYIKEEM------KLSD---LSD---------    
 3 4929.A5DJD0_from_222_to_345              91.2%  12.5%     IGNIIVS-----QLHDELRTSAGNCREISYWTIN-GFSSFVLANEVILSMIMEDF------KCD----REK---------    
 4 36914.A5E2D6_from_263_to_387             91.9%  16.9%     IGSYIEN-----VCYEDLVRCAKYNKTVTYWSIS-QFATQVLANEIIIRMIRDDM------HYS----FKE---------    
 5 573826.CD36_51500_from_215_to_339        91.9%  17.6%     IGAQILD-----KYEKKLTRFCKSNKTASYWNPS-QFSTYVLANEIIIRMIMEDM------NLD----FDK---------    
 6 4959.Q6BPQ2_from_258_to_382              91.9%  16.9%     IASIILS-----RHKKDLQNAANRNKTVSYWTIS-GFSTFVLANEIVIRFVMHDF------DCT----ISE---------    
 7 4924.PICST_33482_from_216_to_339         91.2%  16.9%     IGNSISV-----KLAKELR-AAHRNKTVSYWTTS-GFATHVLANEVIIRMAMEDL------SCD----FDS---------    
 8 28985.Q6CUR6_from_212_to_334             89.7%  21.9%     VGMLILE-----TYGEKLKRN--KNPVISFWGPY-DFSQYILAPEVLSYLCMDDF------KLNN---IED---------    
 9 559307.ZYRO0F16126g_from_143_to_272      89.7%  13.9%     IGEVILQ-----KYKSFLLRR--QGDTMKWWGVS-DFAHYVLAPEVLVSLCIKEM------QLS----DDV---------    
10 4932.YNL254C_from_216_to_365             89.7%  12.2%     VGEEIAK-----RYKRALTHN--QPATLKWWGIT-DFCNYVLAPETLTSFCIYQL------NLS----NKSCSSKTPNKH    
11 436907.A7TF50_from_212_to_350            89.7%  13.7%     VGEYIYD-----IYKEKICSL--KSPTARWWGPR-DFSSYVLAPELLISVCIEEM------GLK----DDP---------    
12 559295.KLTH0F02926g_from_219_to_341      89.7%  16.8%     VAVEVLH-----HYRDLIARQ--NNRVLRWWGVS-DFAQYVLAPELLSALCQEEM------NLPT---LED---------    
13 33169.AGOS_AFR632C_from_201_to_323       89.7%  16.1%     LSTEILS-----QYQDKLSKH--RNPTVQWWGPT-DFSHYVLAPEILSYVCRDEL------GLAD---IDE---------    
14 29883.JGI323636_from_597_to_736          91.9%  19.2%     IHQTLYN-----LFPPS----ELDPDLISPLTSN-EFIQRVLVPEVAVKLIKEDQ------NLEGDMGTNE---------    
15 104341.JGI96066_from_527_to_671          91.9%  17.9%     INQTIYN-----LFPPA----SFHADSTLPLTPT-DFIALVLVPEAAVSLITEDM------NQT----RQE---------    
16 222929.C5PC98_from_4_to_95               67.6%  14.7%     LLEHVIS-----HFVPHIHQITAVDKLVQHYGVL-TYTREVLVPELLVALVQEDL------QVD----AAA---------    
17 51453.JGI22589_from_356_to_471           85.3%  19.9%     MTDYLVR-----EFSDMLMKKAARDKVIAGRGVP-MFIESVLVAELGVRLIMEDM------RVS----PEK---------    
18 5518.FG01264.1_from_447_to_562           85.3%  18.4%     MCDYLVD-----EFGQSLKDKATKDRVIAGRGSA-AFIQSVLVAELAVQLIMEDM------NVN----ARE---------    
19 665079.A7EXG2_from_383_to_499            86.0%  22.1%     MSENIMH-----KFTPKLKERAPIDRLISARGPT-AFVESVIVPELTVLLIKEDM------KVD----EEE---------    
20 332648.A6S3Q4_from_437_to_553            86.0%  22.1%     ISENIMD-----EFTPLLKYRAPLDRLIAARSAA-AFVDSVVVPEVTVLLIKEDM------SVS----DEE---------    
21 5141.NCU08376.1_from_343_to_465          86.0%  20.4%     MSESLVN-----EFSSELRKRAVQDRLVSKRGYM-VYVQSVLVPELAVRLIMEDMSQEGTDKVT----EEQ---------    
22 148305.A4R0N2_from_351_to_468            86.8%  19.9%     MTEYLVK-----RFSGQLRERAIQDRLVAARGHT-TFVQSVLVPELAIQLMMEDL------DIG----AEA---------    
23 222929.C5P1E6_from_356_to_478            90.4%  19.9%     MMDAIIT-----KFAAKLRRLGPSDSLMQAAGAS-GFVQAVLVPELTVMLVKDDM------GVG----DET---------    
24 500485.B6H899_from_442_to_565            91.2%  22.1%     ILETIIG-----RFSVVVRRLATTDDLIKTAGVA-GYTQSVLVPELAVLLVKDDM------KVN----DED---------    
25 5061.CADANGAP00013773_from_353_to_420    50.0%  11.2%     ML--IET-----GYKRSQR----------------------------------DM------GGS----S-----------    
26 162425.CADANIAP00004656_from_336_to_458  90.4%  15.4%     MLQRITT-----RYARKLRRLAAEDHIVNQAGVV-GYTQAVLVPELAIRLIKEDM------GVD----DAS---------    
27 5059.CADAFLAP00002219_from_365_to_487    90.4%  20.6%     MLQALTT-----RFSRKLRRLAASDHIVKSAGVV-GYAQAVLVPELAVRLVKEDM------GVS----DED---------    
28 5085.CADAFUAP00008766_from_377_to_499    90.4%  19.9%     MLQALTA-----RFSRKLRRLAAEDHIVKTAGPV-IYAQAVLVPELAVRLVKEDM------GVD----VDS---------    
   consensus/100%                                            h...h........h.......................................p.......t..................    
   consensus/90%                                             h...l.t......h..........s..h..hs....a.p.llssEhh..hh.c-h......ths.....t..........    
   consensus/80%                                             h.p.lhp.....pat..ltp....sthhthhs...ta.p.VLssElhh.hhh--h......ths.....pp.........    
   consensus/70%                                             hsp.lhs.....catppLpphs.pschlphhuss.sFsp.VLsPElhltlhh-Dh......pls.....cp.........    

                                              cov    pid 161          .         .         .      ] 197
 1 4952.Q6CI81_from_293_to_428             100.0% 100.0%     -------------------ADQIRLRSAEFGVVVAER    
 2 644223.PAS_chr2-2_0300_from_172_to_296   91.2%  14.6%     -------------------AYDLMEWTSDYGKYIMDT    
 3 4929.A5DJD0_from_222_to_345              91.2%  12.5%     -------------------AENIARETVDYGKAITDT    
 4 36914.A5E2D6_from_263_to_387             91.9%  16.9%     -------------------AEAFCQKSVDYGVIIADE    
 5 573826.CD36_51500_from_215_to_339        91.9%  17.6%     -------------------AEKLCLETVDYGIVVADS    
 6 4959.Q6BPQ2_from_258_to_382              91.9%  16.9%     -------------------AEKIIKESSEYGTVISDS    
 7 4924.PICST_33482_from_216_to_339         91.2%  16.9%     -------------------AERIVMESVEYGKVIADA    
 8 28985.Q6CUR6_from_212_to_334             89.7%  21.9%     -------------------AWDIMQTTIEFGTMVADL    
 9 559307.ZYRO0F16126g_from_143_to_272      89.7%  13.9%     -----------YDKNARERAYDIFVNTVKFGTLVADQ    
10 4932.YNL254C_from_216_to_365             89.7%  12.2%     PKQQLNEKEYYYDPELRMLAYDLLEDTVEYGIIVADS    
11 436907.A7TF50_from_212_to_350            89.7%  13.7%     --NYFDDNNEGSGESARSKAYSILQDTVKFGQIVADT    
12 559295.KLTH0F02926g_from_219_to_341      89.7%  16.8%     -------------------AWDVMEATTEFGLLVADD    
13 33169.AGOS_AFR632C_from_201_to_323       89.7%  16.1%     -------------------AWTYMESTTEYGLNVADE    
14 29883.JGI323636_from_597_to_736          91.9%  19.2%     -------------------ALQILRESSAYGVAMFPE    
15 104341.JGI96066_from_527_to_671          91.9%  17.9%     -------------------AIATLRESAEYGVAMFPD    
16 222929.C5PC98_from_4_to_95               67.6%  14.7%     -------------------ACQVLMESTGLGDLVNEN    
17 51453.JGI22589_from_356_to_471           85.3%  19.9%     -------------------ARRILEETKDLGGLVHPE    
18 5518.FG01264.1_from_447_to_562           85.3%  18.4%     -------------------AREIMEESKTLGELIHEE    
19 665079.A7EXG2_from_383_to_499            86.0%  22.1%     -------------------AREILKESCEIGDLVNEE    
20 332648.A6S3Q4_from_437_to_553            86.0%  22.1%     -------------------ARTILTESSEMGDLVNEE    
21 5141.NCU08376.1_from_343_to_465          86.0%  20.4%     -------------------ARTIMKDSTWVGELLNEE    
22 148305.A4R0N2_from_351_to_468            86.8%  19.9%     -------------------ARDVLQESAKLGEMLHEE    
23 222929.C5P1E6_from_356_to_478            90.4%  19.9%     -------------------ARQIMRESNMIGNLLNDQ    
24 500485.B6H899_from_442_to_565            91.2%  22.1%     -------------------ARRIMRESMDIGDRVNPD    
25 5061.CADANGAP00013773_from_353_to_420    50.0%  11.2%     -------------------------------------    
26 162425.CADANIAP00004656_from_336_to_458  90.4%  15.4%     -------------------ARNIMRESINLGEKMNPA    
27 5059.CADAFLAP00002219_from_365_to_487    90.4%  20.6%     -------------------ARQILRDSIDLGEKLNFA    
28 5085.CADAFUAP00008766_from_377_to_499    90.4%  19.9%     -------------------ARQILRESIEIGEKLNFA    
   consensus/100%                                            .....................................    
   consensus/90%                                             ...................A.thh.to..hG.hh..t    
   consensus/80%                                             ...................A.plh.po.phG.hlt.t    
   consensus/70%                                             ...................Ahplhp-oschG.hls-p