cov pid 1 [ . . . . : . . . 80 1 B3H352_ACTP7/14-247 100.0% 100.0% -ASSCKACVDYLLN---------------------------KPDDTAQIL----QGDPRLSQSIADSLDFN--------N 2 F3PHJ5_9BACE/7-242 91.5% 10.2% SISHGVAALEYDLAKEIN------------------GQAVATEIARHELYG--CTGAEMVQEMKPYHIDFP--------N 3 VIRD2_RHIRD/16-264 94.0% 8.0% GTKTLQQIINQLEYLSRKG-----------------KLELQRSARHLDIPVPPDQIRELAQSWVTEAGIYD--------E 4 Q57087_9ZZZZ/9-280 97.9% 9.7% NGASAASALNYALGQDRPMHEKTEQWLQDHQLERPVELTNCRAVAVGGTNG--IDPFIAKEQFDVIRQLHN--------Q 5 Q9WW30_PEDPE/8-248 97.9% 13.4% RSDSASRLVNYAEK---------------------------RAVLKDGLN---LDVDYAKSQLKQVREVYG--------N 6 D2JCN4_STAEP/8-236 96.2% 13.0% STKSTSRAINYAEK---------------------------RAEEKSALN---CDIDYAKSSFKATREMYG--------K 7 Q9Z361_STAEP/8-242 97.0% 12.8% ATKSTSRAINYAEK---------------------------RAVEKSGLN---CDVDYAKSSFKASRELYG--------K 8 RLX1_STAAU/8-238 97.4% 11.4% NTKSASRAINYAEE---------------------------RAEEKSGLN---CDVDYAKSYFKQTRALYG--------K 9 A9CQY2_STAAU/8-239 97.4% 11.3% NTKSASRAINYAEK---------------------------RAEEKSGLN---CDVDYAKSAFKQTRALYG--------K 10 Q9ZIP2_FUSNU/13-276 98.3% 11.9% TKSSLYNILKYVGSQNE-------------------KEKDDRVYKTTGINVS-DDYKKAFKEMMLTKELHC--------K 11 LTRB_LACLM/34-307 97.0% 8.5% NEDHLTNLFPYISNPDKTMS------------KQLVSGHGITNVYDAANEF--IATKKLKALSKGTDFNFDPQTGKVRFN 12 Q54883_STREE/11-264 95.7% 8.7% GKNYRSKLIKYILNPSKTKN------------LTLVSDFGMRNYLDFPSYK--ELVKMYNDNFLSNDTLYE--------F 13 Q56424_BACFG/7-242 94.0% 10.0% KGTSFSGCVCYVLRE----------------------DKS-KLLEAVGVEG---TPEQMAEQFELQTLLND--------K 14 Q9XAW2_PSEAC/12-285 98.7% 10.8% GKTSFKSLAKYACERDHIDP---------------ETGAVERRECSTETNC--LDKDTAWREMKAVSDMNG--------R 15 Q4FIJ3_SALCE/61-315 97.9% 10.8% RNESFVALVDVMKDG-----C-----------E---WVNFYGVTCFHNCTS--LETAAADMEYIARQAHYA--------K 16 A6H977_9ZZZZ/12-252 95.7% 13.9% KKSDFAELVKYITDE-----Q-----------G---KTERLGHVRVTNCEA--NTLPAVMAEVMATQHGNT--------R 17 TRAI5_ECOLX/12-252 95.7% 13.1% GKSDFAGLANYITDA-----Q-----------S---KDHRLGHVQATNCEA--GSIQDAITEVLATQHTNT--------R consensus/100% ..t.h.thh................................t................h.......t............. consensus/90% ttpph.thhphh.t...........................t.....t......t...h.t.....p...s........p consensus/80% ttpshtthlpYh.p...........................p..tttsh.....pht.hhpphh..p.h.s........p consensus/70% sppohsphlsYhtp...........................+shppsshp....shchhhpphhsspthas........p cov pid 81 . 1 . . . . : . 160 1 B3H352_ACTP7/14-247 100.0% 100.0% T---------YTAGCLSFEESDLPEIQKR------EIMARFEKAMFAGLEPEQYNIAWVQHTD----KGRLELNFVIPNV 2 F3PHJ5_9BACE/7-242 91.5% 10.2% VK-------NNCLRFEVSPSIEESATFTD------ADWAELGNDFMQRMGLANHQYIIIRHSGTESKKEQAHLHILANRV 3 VIRD2_RHIRD/16-264 94.0% 8.0% SQS--DDDRQQDLTTHIIVSFPAGTDQTA---AYEASREWAAEMFGSGYGGGRYNYLTAYHVD----RDHPHLHVVVNRR 4 Q57087_9ZZZZ/9-280 97.9% 9.7% TK-------ESNQVLRITQSFALDE-LNPKVQKDWQKANDLGVELAENLYP-NHQSAVYTHLDG--KNHVLHNHIIVNKV 5 Q9WW30_PEDPE/8-248 97.9% 13.4% Q--------GKTQAYASRISFSPKE-LDPTNENDQQKALEIAKEVYQKTYP-NQQVALYEHAD----TNALHVHAVIGAI 6 D2JCN4_STAEP/8-236 96.2% 13.0% T--------DGNEGHVVIQSFKPNE-VTP------EQCNQLGLELAEKIAP-NHQVAVYTHND----TDHVHNHIVINSI 7 Q9Z361_STAEP/8-242 97.0% 12.8% T--------DGNQGHVIIQSFKPGE-VTP------EQCNQLGLALAEKLAP-NHQVAVYTHAD----TDHVHNHIVMNSI 8 RLX1_STAAU/8-238 97.4% 11.4% E--------NGVQAHTVIQSFKPGE-VTA------KECNEIGLELAKKIAP-DYQVAVYTHTD----KDHYHNHIIINSV 9 A9CQY2_STAAU/8-239 97.4% 11.3% E--------DGIQAHTVIQSFKPGE-VTP------EQCNQLGLELAEKIAP-NHQVAVYTHTD----KDHYHNHIVINSV 10 Q9ZIP2_FUSNU/13-276 98.3% 11.9% L--------DGRQYRHHIQSFKPGE-VDE------ETAHKMAVEFAEKNFK-GFDVFISTHID----KGHIHNHIIINTV 11 LTRB_LACLM/34-307 97.0% 8.5% VES--LEKNNAVLGHHLIQSFSPDDNLTP------EQIHEIGRQTILEFTGGEYEFVIATHVD----REHIHNHIIFNST 12 Q54883_STREE/11-264 95.7% 8.7% RHDRQEVNQRKIHSHHIIQSFSPDDHLTP------EQINRIGYEAAKELTGGRFRFIVATHVD----KGHIHNHIILNSI 13 Q56424_BACFG/7-242 94.0% 10.0% V---------KNTVGHTSLNFSPED--GERLKTDDALMLQIAHDYMAKMGIENTQYIVARHTD----REHPHCHIVFNRV 14 Q9XAW2_PSEAC/12-285 98.7% 10.8% V---------KDPVYHFTVSWPAHEKPTD------AQVFEAGREGMKSLGMEGHQYLAAVHRD----TDNVHGHFMVNRV 15 Q4FIJ3_SALCE/61-315 97.9% 10.8% D--------DTDPVFHYILSWQSHE--SP--RP--EQIYDSVRHTLKSLGLADHQYVSAVHTD----TDNLHVHVAVNRV 16 A6H977_9ZZZZ/12-252 95.7% 13.9% S--------EADKTYHLLVSFRAGE--KP--DA--ETLRAIEDRICAGLGFAEHQRVSAVHHD----TDNLHIHIAINKI 17 TRAI5_ECOLX/12-252 95.7% 13.1% A--------KGDKTYHLIVSFRAGE--QP--SA--DTLRAIEERICVGLGYGEHQRISAVHND----TDNLHIHIAINKI consensus/100% ..............h....p....t..t.......t.h......hh.t....t.p.h...H.s....pt..c.phhhsth consensus/90% ..........t..hhh...sh..tp..p.......t.h.tht.thh.thh..thphh.h.H.D....ptt.H.Hhhhsph consensus/80% .........tts.shthh.Sapst-..ss......tph.phs.phhttht..paphhhhhHhD....ppphH.HlhhNpl consensus/70% s........ptstsaphh.SFpssE..ss......pphtpluhchhpphs..paQhhshsHsD....p-plHsHIllNpl cov pid 161 . . . 2 . . . . 240 1 B3H352_ACTP7/14-247 100.0% 100.0% EMTS---GKRLQPY------------YDRADRPLAENFKQVINHEYSLSDPN-------NPIKQKNLIDRKDLP------ 2 F3PHJ5_9BACE/7-242 91.5% 10.2% SLS----GELYRDN------------W--IGKKATEAANAIAKERNFVQSQ-----------------DIGKVN------ 3 VIRD2_RHIRD/16-264 94.0% 8.0% ELLGHGWLKISRRH------------PQLNYDGLRKKMAEISLRHGIVLDAT-------------SRAERGIAER----- 4 Q57087_9ZZZZ/9-280 97.9% 9.7% NLET---GKKLREQ------------KGESVQRAREMNDRLASRENWHILEP--------PKERQTETEKELIA------ 5 Q9WW30_PEDPE/8-248 97.9% 13.4% DLET---GRKMHGN------------WQEYREKLVHNTDEISQEHGLEVTQVD-----PNRYEKRTMAEIKMQA------ 6 D2JCN4_STAEP/8-236 96.2% 13.0% DLET---GKKFNNN------------K-KALHDIRQANDEICVSHNLSIPEE-------KAKLRYTQAEYSVLN------ 7 Q9Z361_STAEP/8-242 97.0% 12.8% DLET---GKKFNNN------------K-QALRNVRNFNDEVCMEHGLSVPDKD------TARLRYTQTEKAIAD------ 8 RLX1_STAAU/8-238 97.4% 11.4% NLET---GNKYQSN------------K-EQRDFIKKANDQLCEERGLSVPEK-------SSEIRYTLAEQNMI------- 9 A9CQY2_STAAU/8-239 97.4% 11.3% DLET---GKKYQSN------------K-KQRDLVKKENDNICREHGLSVTERG------IAKMRYTQAEKGIVF------ 10 Q9ZIP2_FUSNU/13-276 98.3% 11.9% NIDT---GMKFREL------------NKNEYNQKKENNVELKSHEFYLEDLKKSSDEICLANNLSVIPQKEKAESQNIYN 11 LTRB_LACLM/34-307 97.0% 8.5% NLYT---GKQFDWKVIPKEKTKSGKAYDVTKNNFEKVSDKIASRYGAKIIEK-------SPGN--SHLKYTKWQ------ 12 Q54883_STREE/11-264 95.7% 8.7% DQNS---DKKFLWD------------Y-KAEHNLRMVSDRLSKIAGAKIIEN-----------RYSHRQYEVYR------ 13 Q56424_BACFG/7-242 94.0% 10.0% DND----GKTISDK------------N--DFYRNEKVCKMLTAKYRLHFANG-----------KDNIKEERLRP------ 14 Q9XAW2_PSEAC/12-285 98.7% 10.8% NPET---YKAVYPD------------R--DYFKLDKTMREMELRQGWSHDKGPY---AVHERNGQKVVDWAKDEPSHRQP 15 Q4FIJ3_SALCE/61-315 97.9% 10.8% HPET---GYLNRLS------------W--SQEKLSRACRELELKHGFAPDNGCW---VHAPGNRIVRKTAVERDRQ---- 16 A6H977_9ZZZZ/12-252 95.7% 13.9% HPTR---NTIHEPY------------R--AYRALADLCATLERDYGLERDN-------HETRQRVSENRANDMER----- 17 TRAI5_ECOLX/12-252 95.7% 13.1% HPTR---HTMHEPY------------Y--PHRALAELCTALERDYGLERDN-------HEPRKRGAEGRAADMER----- consensus/100% p.......................................h...........................p........... consensus/90% p........h.......................htp..ttlt.p..h.....................p.t......... consensus/80% p.pp...sphhp..............h..thpthtc.spplt.c.sh..sp..............s.hcht.h....... consensus/70% s.po...Gcthp.p............h..shctlpchscplptcpshphspt...........p.s.tchthht...... cov pid 241 : . . . . 3 . . 320 1 B3H352_ACTP7/14-247 100.0% 100.0% ---------------TDKKQALQAITDGLTALANAG--QINDRQDVINALERAGFEIA--RITPKNLSIKTDGQN--LRL 2 F3PHJ5_9BACE/7-242 91.5% 10.2% ------------------KAEIKEAMDGVLKKMQG-----FDFTKFKEELGKRGFKVREARASTGKLNGYYVTARSGTEY 3 VIRD2_RHIRD/16-264 94.0% 8.0% ------------------PITYAEHRRLERMQAQK-----IQFEDTDFDETSPEEDRR---DLSQSFDPFRSDPS--TGE 4 Q57087_9ZZZZ/9-280 97.9% 9.7% ----------------KNEYSYMDDLRERINKSLQDV-SVSSYETFKERLSDNGVILSERGQTFSYAFLDANNKQ--RRA 5 Q9WW30_PEDPE/8-248 97.9% 13.4% ----------------KGQPTWKDQIRQAVDKTMANR-LVTDFQTFRDDLKQKTVDVW---ERGKDLTYQLTGTN--YKA 6 D2JCN4_STAEP/8-236 96.2% 13.0% ------------K----GKTSWKDEIRHAIDQSQ-----AASYEELGNDLQQNGIKIE--RITDKTITYRHLEED--KKV 7 Q9Z361_STAEP/8-242 97.0% 12.8% -----------PNTKSTAQYSWKDEIREAIDQSQ-----ATNMNEFKDHLNQHGIEIE--RVTPKSITYRHLVED--KKV 8 RLX1_STAAU/8-238 97.4% 11.4% ---------------DKDKRSWKNDIRMAVEETKD---NAVAFEEFNTLLKEKGVEIT--RVTKNNVTYRHIEED--KKV 9 A9CQY2_STAAU/8-239 97.4% 11.3% ---------------DRDEYSWKDELRDLIENAKT---HTSNLETFSEHLEEKGVGV---KLRGETISYKPENEN--KWV 10 Q9ZIP2_FUSNU/13-276 98.3% 11.9% ---------RREYNVVMNKTSYKMELAKDIKRASKN---CKSKEDFIKALDEKGVIVD-WEDHKKHITFKFKDEKK-KSI 11 LTRB_LACLM/34-307 97.0% 8.5% -----------------TQSIYKSQIKQRLDYLLE---MSSDIEDFKRKATALNLSFD---FSGKWTTYRLLDEPQMKNT 12 Q54883_STREE/11-264 95.7% 8.7% ------------------KTNYKYEIKQRVYFLIE---NSKNFEDLKKKAKALHLKID---FRHKHVTYFMTDSNMKQVV 13 Q56424_BACFG/7-242 94.0% 10.0% ------------------YDKAKHEVYKALKGELP---HARSWNELKEALSERDIELKFKVSRTTKEVQGVKFEYGGISF 14 Q9XAW2_PSEAC/12-285 98.7% 10.8% DREKLPGKARQMEVMTGNESLTTYAQGQPKKDALEALNKGGGWHELHEALGRHGLEIR--QKGQGFAIHSKTDPEQ-TPI 15 Q4FIJ3_SALCE/61-315 97.9% 10.8% ----------NAWTRGKKQTFREYIAQTAVAGLRSE--PVHDWLSLHRRLAEDGLYLS--QMDGKFLVMDGWDRNR-EGV 16 A6H977_9ZZZZ/12-252 95.7% 13.9% --------------HAGVESLVGWIKRECLPELQA----AQSWEDLHRVLRENGLKLR--ERGNGFIFEAGDG----TTV 17 TRAI5_ECOLX/12-252 95.7% 13.1% --------------HAGVESLVGWIKRECLDEIKG----AQSWQELHQVMRDNGMELR--VRANGLVFEAGDG----TMV consensus/100% .....................h.......h...........th.ph....tt.t..h.......t............... consensus/90% .....................ht..ht..h...........shpph.p.htt.th.h.....t.t.h...h........h consensus/80% ..................p..ht..hpthltt..t....stshpphppthpptshtlp....ttt.h..th.s....p.h consensus/70% ..................ptthp.thcptlpph.t....spsap-hcctLpppGlclp...hpsphlshth.spp..pth cov pid 321 . . ] 343 1 B3H352_ACTP7/14-247 100.0% 100.0% KGAFYEQD-FRFSTDLSADITER 2 F3PHJ5_9BACE/7-242 91.5% 10.2% KASEIGKG--YTLAHIERTQSKL 3 VIRD2_RHIRD/16-264 94.0% 8.0% PDRATRHD--KQPLEQHARFQES 4 Q57087_9ZZZZ/9-280 97.9% 9.7% RETRLGSD--FGRETILHELEKR 5 Q9WW30_PEDPE/8-248 97.9% 13.4% RGNKLGTA--YEKGEIYHELERR 6 D2JCN4_STAEP/8-236 96.2% 13.0% RGKKLGED--YDKGGLEIGFNRQ 7 Q9Z361_STAEP/8-242 97.0% 12.8% RGRKLGED--YNKGGIEDGFERQ 8 RLX1_STAAU/8-238 97.4% 11.4% RGNKLGDS--YDKGVIENGFAIE 9 A9CQY2_STAAU/8-239 97.4% 11.3% RGRTLGSE--YEKGAIDHEHERH 10 Q9ZIP2_FUSNU/13-276 98.3% 11.9% RLANLEKT--FQDETFKKEYLEQ 11 LTRB_LACLM/34-307 97.0% 8.5% RGRNLDKN--RPEKYNLESIIER 12 Q54883_STREE/11-264 95.7% 8.7% RDSKLSRKQPYNETYFEKKFVQR 13 Q56424_BACFG/7-242 94.0% 10.0% SGSKVSRE--FSYMNIDYRLRRN 14 Q9XAW2_PSEAC/12-285 98.7% 10.8% KASTMAQE--LGGGKLTKRIGPY 15 Q4FIJ3_SALCE/61-315 97.9% 10.8% QLDSFGPS--WCAEKLMKKMGDY 16 A6H977_9ZZZZ/12-252 95.7% 13.9% KASTVSRD--LSKPKLEARFGAF 17 TRAI5_ECOLX/12-252 95.7% 13.1% KASTVARD--LSKPSLEARLGPF consensus/100% ..t.ht.t..h.......t.... consensus/90% p.tthtpt..h.......th... consensus/80% +spphspp..htt.th.tphtt. consensus/70% +usplups..hspttlptchtcp