Family alignment for the Rep_N domain, displayed in

                         cov    pid   1 [        .         .         .         .         :         .         .         . 80 
1 Q6JL80_9VIRU/4-189  100.0% 100.0%     FYEVIVRVPFDVEEHLPGISDNFVDWVTGQIWELPPESDLNLTLIEQPQ---LTVADRIRRVFLYEWNKFSKQ-ES----    
2 Q8JQG1_9VIRU/4-192  100.0%  61.9%     FYEIVIKVPSDLDEHLPGISDSFVNWVAEKEWELPPDSDMDLNLIEQAP---LTVAEKLQRDFLVQWRRVSKAPEA----    
3 Q7TG44_9VIRU/4-191  100.0%  46.3%     YYEVIVQLPNDVESQVPGISDSFVNWITSREWTLPEDADWDLDQVDQVQ---LTLGDKIQREIRTHWGTMAKEPDF----    
4 Q9WKM1_PAVHB/3-177   89.8%  16.5%     LFRGVLQ-----------VSSNVLDCANDNWWC----SLLDLDTSDWEP---LTHTNRLMAIYLSSVASKLDFTGGPLAG    
5 Q88271_9VIRU/3-177   89.8%  19.1%     MYRGVIQ-----------VNANFTDFANDNWWC----CFFQLDVDDWPE---LRGPERLMAHYICKVAALLDTPSGPFLG    
6 Q9J0X5_9VIRU/3-177   89.8%  18.6%     MFRGVVH-----------VSANFINFVNDNWWC----CFYQLEEDDWPR---LQGWERLIAHLIVKVAGEFAVPGGSTLG    
7 Q9J0X7_9VIRU/3-177   89.8%  20.1%     MFRGVIQ-----------LTANITDFANDSWWC----SFLQLDSDDWPE---LRGVERLVAIFICKVAAVLDNPSGTSLG    
8 VU94_HHV6Z/17-203    97.3%  27.6%     YIMLTIKGPVEWEAEIPGISTDFFCKFSN----VPVPHFRDMHSPGAPDIKWITACTKMIDVILNYWNNKTAVPTPA---    
9 A7LIB2_9VIRU/14-197  98.9%  45.2%     FYEVIIRLPSDIDQDVPGLSLNFVEWLSTGVWE--PTGIWNMEHVNLPM---VTLAEKIKNIFIQRWNQFNQD-ET----    
  consensus/100%                        hh.hhlp...........ls.shhphhst........t.hphp..t......lph.p+h.t.hh..htt..t..t.....    
  consensus/90%                         hh.hhlp...........ls.shhphhst........t.hphp..t......lph.p+h.t.hh..htt..t..t.....    
  consensus/80%                         hachllp...........losshhshhsst.Wp....s.hphp..p.s....lphsp+l.t.hl.phsth.t..ts....    
  consensus/70%                         hacsllp...........lSssFhsahssp.Wp....s.hpLc.s-.s....Lphs-+lhthhlsphsth.p.sps....    

                         cov    pid  81          .         1         .         .         .         .         :         . 160
1 Q6JL80_9VIRU/4-189  100.0% 100.0%     -KFFVQFEKG--SEYFHLHTLVETSGISSMVLGRYVSQIRAQLVKVVFQNIEPRINDWVAITKVKK--GGANKVVDSGYI    
2 Q8JQG1_9VIRU/4-192  100.0%  61.9%     -LFFVQFEKG--ESYFHLHVLVETTGVKSMVLGRFLSQIREKLVQTIYRGVEPTLPNWFAVTKTRNGAGGGNKVVDECYI    
3 Q7TG44_9VIRU/4-191  100.0%  46.3%     -HYFIQLEQG--EVFFHLHVLLETCSVKPMVLGRYIRHIQQKIVSKVYCATSLRWKDGCVVTKTKN-FGGANKVRAESYI    
4 Q9WKM1_PAVHB/3-177   89.8%  16.5%     CLYFFQVECNKFEEGYHIHVVIGGPGLNPRNL---TVCVEGLFNNVLYHLVTENVKLKFLPGMTTK---GKYFRDGEQFI    
5 Q88271_9VIRU/3-177   89.8%  19.1%     CKYFLQVEGNHFDNGFHIHVVIGGPFLTPRNV---CSAVEGGFNKVLADFTSPTITVQFKPAVSKK---GKYHRDGFDFV    
6 Q9J0X5_9VIRU/3-177   89.8%  18.6%     LQYFLQAEHNHFDEGFHVHVVVGGPFVTPRNV---CNIVETGFNKVLRELTEPTYEVSFKPAISKK---GKYARDGFDFV    
7 Q9J0X7_9VIRU/3-177   89.8%  20.1%     CKYFLQAEGNHYDAGFHVHIVIGGPFINARNV---CNAVETTFNKVLGDLTDPSMSVQFKPAVSKK---GEYYRDGFDFV    
8 VU94_HHV6Z/17-203    97.3%  27.6%     -KWYAQAENK--AGRPSLTLLIALDGIPTATIGKHTTEIRGVLIKDFFDGNAPKIDDWCTYAKTKK-NGGGTQVFSLSYI    
9 A7LIB2_9VIRU/14-197  98.9%  45.2%     -DFFFQLEEG--SEYIHLHCCIAQGNVRSFVLGRYMSQIKDSIIRDVYEGKQIKIPDWFAITKTKR--GGQNKTVTAAYI    
  consensus/100%                        ..aahQhEtt..t.h.plphhlt.s.l.shsl...h..lpt.h.p.hhp..t.ph...hh.shspp...Gt..h.s.tal    
  consensus/90%                         ..aahQhEtt..t.h.plphhlt.s.l.shsl...h..lpt.h.p.hhp..t.ph...hh.shspp...Gt..h.s.tal    
  consensus/80%                         ..aFhQhEts..pthhHlHhlltts.lpshsl...hstlct.h.pslhphhp.ph.s.hh.sho+p...Gt.hh.s.sal    
  consensus/70%                         .paFhQhEps..pthaHlHllltsshlpshsl...hstlcsthspslhchsp.phps.ht.shoK+...Gt.thss.sal    

                         cov    pid 161          .         .         .        ] 199
1 Q6JL80_9VIRU/4-189  100.0% 100.0%     PAYLLPKVQPELQWAWTNLEEYKLAALNLEERKRLVAQF    
2 Q8JQG1_9VIRU/4-192  100.0%  61.9%     PNYLLPKTQPELQWAWTNMEEYISACLNLAERKRLVAQH    
3 Q7TG44_9VIRU/4-191  100.0%  46.3%     PAYLIPKQQPEVQWAWTNVPEYIKACLHRELRASLARLH    
4 Q9WKM1_PAVHB/3-177   89.8%  16.5%     ENYLMKKIPLNVVWCVTNIDGYIDTCISATFRKGACHAK    
5 Q88271_9VIRU/3-177   89.8%  19.1%     TYYLMPKLYPNVIYSVTNLEEYQYVCNSLCYRRTMHKRQ    
6 Q9J0X5_9VIRU/3-177   89.8%  18.6%     TNYLMPKLYPNVVYSVTNFSEYEYVCNSLAYRRNMHKKA    
7 Q9J0X7_9VIRU/3-177   89.8%  20.1%     TNYLMPKLYPNVIYSVTNLEEYQYVCNSLCYRKNMHKQH    
8 VU94_HHV6Z/17-203    97.3%  27.6%     PFALLQIIRPQFQWAWTNINELGDVCDEI-HRKHIISHF    
9 A7LIB2_9VIRU/14-197  98.9%  45.2%     LHYLIPKKQPELQWAFTNMPLFTAAALCLQKRQELLDAF    
  consensus/100%                        ..hLh.h...ph.ashTNh..h..ss.ph..Rtthht..    
  consensus/90%                         ..hLh.h...ph.ashTNh..h..ss.ph..Rtthht..    
  consensus/80%                         ..YLh.Kh.Ppl.auhTNh.ta..ss.pht.Rpphhtth    
  consensus/70%                         stYLhPKh.Ppl.auhTNhpEY..sC.slthR+phhpth