Family alignment for the RuBisCO_small domain, displayed in

                                           cov    pid  1 [        .         .         .         .         :         .         .         . 80 
 1 321327.CYA_0427_from_314_to_407      100.0% 100.0%    NSADPAPVS--LNPDVQAQLRQILAQGYEILVEHAD------------PRRYRVHSWQ--ECGVAHLREWAAACQAVEQC    
 2 203124.Tery_1574_from_330_to_421      97.9%  39.4%    HSIKSSN----LSSEVREKIQKILEDGGKIGMEYAD------------KRRYKTGSWK--SCGKIENGEVKEVINAVENC    
 3 1148.sll1031_from_352_to_445         100.0%  33.0%    SAVAHQTGN--LAGDSANQLRALLHQGYKIGLEYAS------------ARRFKTGSWL--TGGTIGSHREGEALQELNRF    
 4 1148.sll1031_from_234_to_327         100.0%  41.5%    YINSIDNMS--INSDITNQIRSLLAQGYGIGAEHAN------------ERRFKTKSWQ--SCGTADGFRPDQVIATVEGW    
 5 197221.tll0944_from_443_to_533        96.8%  37.2%    VSSGGNDTL--LSADLVNQIQDLLRQGCQVITEYAD------------QRRFRTSSWQ--SG--IKITSAQQI-NDLRSF    
 6 197221.tll0944_from_557_to_650       100.0%  36.2%    SQGSPSTHS--LSQEVIEQVRQLLQQGYTLGLEHVD------------ARRYRTNSWQ--SGPRIEAKNLNEALAAIQAC    
 7 197221.tll0944_from_220_to_313       100.0%  37.2%    EMLTGEKNT--MTTDYGTHVRQLLQQGYQISLEYAD------------ARRYRTSSWQ--SGPTLTGQQESQVMAAIAQL    
 8 203124.Tery_3849_from_573_to_667     100.0%  29.5%    SQVATTIAHK-LSQEAVEEIRSLIAGGYKIGTEYAD------------KRRFKTSSWK--TDIQIDGKREADVFPVLEES    
 9 1140.Synpcc7942_1423_from_450_to_539  95.7%  35.1%    TSNGS------SSSDVAGQVRGLLAQGYRISAEVAD------------KRRFQTSSWQ--SLPALSGQSEATVLPALESI    
10 321327.CYA_1614_from_344_to_435       97.9%  35.1%    GSGAANPR---PDASLEEEIRALLAQGYRVGLEVAD------------VRRYRTSSWQ--TLGNWSG-SAQEILAAVQAA    
11 203124.Tery_3849_from_221_to_311      96.8%  30.9%    SGTTGR-----LTPEVVAHVNQLVSQGYYVGTEHAD------------TRHFKTGSWK--TCSPIQSSHSSEVVAALEAC    
12 321327.CYA_1614_from_450_to_543      100.0%  29.8%    GKLGGSAAG--LDLELQEEVHRLLAQGYRIGYEYAD------------ERRFKTSSWQ--TGPTIRASRGPEVLAELTAA    
13 240292.Ava_3903_from_318_to_410       98.9%  43.6%    KRETSNTH---LSLETQEQIRQILSQGHKITFEHVD------------ARRFRTGSWQ--SCGTLHIDAESDAISTLEAC    
14 203124.Tery_3849_from_452_to_544      98.9%  33.0%    THAGINTR---LSQEVVEQVRSLFNQGYRISLEHAN------------ERRFKTSSWI--SCAPISATNHSQAIAELEQV    
15 203124.Tery_3849_from_338_to_431     100.0%  35.1%    STTTPNTTG--LTPEVVTQVNSLLSQGYKIGTEYAN------------ERRFKTSSWQ--NGPTISETNSAQVLAALEKF    
16 1148.sll1031_from_469_to_562         100.0%  35.1%    SAGGSSAGG--LTPEVIATVRGLLANGHSIGTEHTD------------KRRFKAKSWD--TCPTIDGGREAEVLAKLEAC    
17 240292.Ava_4469_from_461_to_556      100.0%  38.5%    SSGTATATATRLSTEVVDQVRQILGGGYKLSIEHVD------------QRRFRTGSWT--STGAISATSEREAIAVIEAS    
18 251221.gvip286_from_224_to_317       100.0%  30.9%    THAQVSSMF--MTSQTLDTVRSLLAQGCRLAVEFAD------------ERRFRANSWV--SGPAIQAAREPEVVSALENV    
19 251221.gvip286_from_580_to_668        94.7%  37.2%    RSSS-------LSSEVLDQLRHLLGQGHRIGVEFAD------------VRRFKANSWV--SGPAIQAAREPEAAAALETV    
20 1148.sll1031_from_592_to_687         100.0%  38.5%    NGGGYSNSAVRLDNSVVTQVRSLLAQGYKIGTEHTD------------KRRFKAKSWQ--SCAPITSTHESEVLRALEGC    
21 240292.Ava_4469_from_223_to_315       98.9%  39.4%    SSEVASNS---LGAETIEQVRYLLEQGYKIGTEHVD------------QRRFRTGSWT--SCQPIEGRSVGDALAALEAC    
22 1140.Synpcc7942_1423_from_333_to_425  98.9%  37.2%    SYASVSGN---LSAEVVNKVRNLLAQGYRIGTEHAD------------KRRFRTSSWQ--SCAPIQSSNERQVLAELENC    
23 251221.gvip286_from_342_to_435       100.0%  36.2%    SHRPGNGGL--LSPEAAQQVQSLLSQGYRIGTEHAD------------ERRFRANSWQ--NCAPIAATREPEVLAALEGC    
24 197221.tll0944_from_329_to_422       100.0%  41.5%    TVNASPVGS--LDAAVVAQVRQLLQQGYQIGTEHAD------------ARRYRTSSWT--SCAPIQSKQEPEVLAALEAC    
25 103690.all0865_from_347_to_440       100.0%  37.2%    YSNGATSGK--VSAETVDQIRQLLAGGYKIGTEHVD------------ERRFRTGSWN--SCKPIEATSAGEVVAALEEC    
26 321327.CYA_1614_from_234_to_325       97.9%  36.2%    RNGGGSL----LKPEVVEQVRALLAQGYRVGLEYAD------------ARRFRTSSWQ--SESPITSTREAEVMQSLGAI    
27 321332.CYB_1794_from_560_to_653      100.0%  39.4%    PKGSLSGTR--LSAEVVAQVQQLLSQGYRIGTEHAD------------KRRFRTSSWQ--SCSPIEATQVPQVVAALEAC    
28 323261.Noc_0332_from_10_to_109       100.0%  17.0%    TQGQFSFLPDLTDEQILAQIKYALKNDWAVNVEYTD------------DPHPRNTYWEMFGIPMFDLKDPAGIMMEINDC    
29 420662.Mpe_A1479_from_10_to_109      100.0%  22.0%    TQGQFSFLPDLSDAEITLQIEYGLGKGYAWSVEYTD------------DPHPRNTYWEMYGNPMFDLHDAAGVLMELNHC    
30 420662.Mpe_A2783_from_4_to_103       100.0%  22.0%    TQGTFSFLPDLSDEQISRQVSYCLDKGWAIGLEYTD------------DPHPRNTYWEMFGNPMFDVQDAAGVMLEVKSC    
31 349163.Acry_0825_from_4_to_103       100.0%  19.0%    TQGCFSFLPDLTDEQISRQIQYCLDKGWAVNLEYTD------------DPHPRNTYWEMWGLPMFDIRDAKAIMSELADC    
32 349102.Rsph17025_2711_from_4_to_103  100.0%  21.0%    TQGCFSFLPDLTDEQISAQVEYCLSRGWAVSLEYTD------------APHPRNTYWEMWGMPMFDLRDPKGVMMELEEC    
33 258594.RPA1560_from_4_to_103         100.0%  20.0%    TQGCFSFLPDLTDEQIAAQVQYALSKGWAVNLEFTD------------DPHPRNTYWDMWGLPMFDLQDAAGVMMELNEC    
34 78245.Xaut_1917_from_4_to_103        100.0%  25.0%    TQGTFSFLPDLTPAQVRAQVQYCLDQGWAVSVEHTD------------DPHPRNTYWEMWGPPMFDLRDAAGVVGEIDGC    
35 266265.Bxe_B2452_from_4_to_103       100.0%  24.0%    TQGTFSFLPELTDEEIRLQIDYALSQGWACSVEYTD------------DPHPRNTYWEMWGLPMFDLRDAAGVLQEVKAC    
36 288000.BBta_2642_from_13_to_110      100.0%  15.3%    RGETFSYLPPMTQDRLRKNIAYLISQNWNPAIEHTE------------PEKSMSSFWYLWKLPMFGERSIERILGELEAC    
37 316057.RPD_1548_from_19_to_116       100.0%  17.3%    KLGTFSYLPPMDAEQLRKQINYIVNQGWTAAIEHTE------------PSHATGYYWYMWKLPMFGETDVDRVLTEIEAC    
38 349124.Hhal_1045_from_18_to_115      100.0%  21.4%    RFETFSYLPEMSDADVRKQVQYIVDQGWNPAIEHTE------------PENAFDHYWYMWKLPMFGETDVDAILKEAEAC    
39 292415.Tbd_2623_from_18_to_115       100.0%  17.3%    KFETFSYLPAMNAADIRKQVEYLVSKGWNPAIEHTE------------PEHLMDSYWYMWKLPMFGETDIDRILGEAEAC    
40 317025.Tcr_0428_from_17_to_114       100.0%  17.3%    KAETFSYLPKMTAEQIKAQVQYIIDRGWNPAIEHSE------------PENAFSYYWYMWKLPMFGETDADAVLAEVDAC    
41 187272.Mlg_2837_from_18_to_115       100.0%  15.3%    KLGTFSYLPPMTDDELRRQVEYIIEKGWNPAIEHSE------------PENAHMYFWYMWKLPMFGETDVDRVLAEAEAC    
42 317025.Tcr_0839_from_14_to_111       100.0%  20.4%    TLETFSFLPELTADEIYDQIVYIINQGWSPALEHEE------------PAKASDHYWGMWKLPMFGTRDPNEVLAEIDAC    
43 32051.SynWH7803_0679_from_15_to_112  100.0%  18.4%    TLETFGFLPPMTQDEIYDQIAYIIAQGWSPLVEHVH------------PSNSMATYWSYWKLPFFGEKDLNVVVSELEAC    
44 3702.AT1G67090.1_from_66_to_175      100.0%  14.5%    KFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEEC    
45 1148.slr0012_from_9_to_106           100.0%  22.4%    RYETLSYLPPLTDQQIAKQVEFLLDQGFIPGVEFEE------------DPQPETHFWTMWKLPFFGGATANEVLAEVREC    
46 1140.Synpcc7942_1427_from_11_to_108  100.0%  21.4%    RFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEFNE------------HSNPEEFYWTMWKLPLFDCKSPQQVLDEVREC    
47 197221.tll1504_from_9_to_106         100.0%  19.4%    RYETFSYLPPLSDAQIARQIQYAIDQGYHPCVEFNE------------TSNAEIRYWTMWKLPLFNCTNAQDVLNEVQQC    
48 203124.Tery_4408_from_9_to_106       100.0%  23.5%    RYETLSYLPPLTDLQIRKQLQYILDQGFIAGVEFSE------------SSDAEMHYWTLWKLPLFQARTIDEVLVEIDAC    
49 251221.gvip297_from_9_to_106         100.0%  18.4%    FYETMSYLPPLTDAEIAKQIQYMLDKGYIPCVEFNE------------TSEPTMVYWTMWKLPLFSVRSPQEVLSEVNAC    
50 240292.Ava_3905_from_9_to_106        100.0%  23.5%    RYETLSYLPPLTDVQIEKQVQYILSQGYIPAVEFNE------------ASEPTEFYWTLWKLPLFGAKTSREVLGEVQAC    
51 321327.CYA_1196_from_9_to_106        100.0%  20.4%    RYETFSYLPPMTDLQILKQVQYILDQGYIPAIEFNE------------SSQPTDHYWTLWKLPLFSATSPQEVLTEVQAC    
   consensus/100%                                        ..............t...pl..hhttth...hEh......................W...t...ht..t...h...htt.    
   consensus/90%                                         t.ts.s......s.ph.tplp.hltpGa..shEasc..............p.pt..W...ths.ht.tp..thh.tlpth    
   consensus/80%                                         p.tshs.h...hs.plhtplp.hltpGat.shEas-.............tc.pst.Wt..phs.ht.pp.ttlhttlpts    
   consensus/70%                                         p.tshohh...hstplhpQlp.lLspGathuhEas-............tp+hcsp.Wp..phshhstpp.spVlstlcsC    

                                           cov    pid 81          .         1         . ] 112
 1 321327.CYA_0427_from_314_to_407      100.0% 100.0%    LSRFPKDYIRLVGVDPVK--KQRRVEAIIHRP    
 2 203124.Tery_1574_from_330_to_421      97.9%  39.4%    LVKHQNDYVRLIGIDGNV--KRRIVEKIIYRP    
 3 1148.sll1031_from_352_to_445         100.0%  33.0%    LADHTNEYVRIIGIDPAG--KRRVAEIVVHRP    
 4 1148.sll1031_from_234_to_327         100.0%  41.5%    LQEFAGEYVRLIGIDQGA--KRRVVEVIIQRP    
 5 197221.tll0944_from_443_to_533        96.8%  37.2%    LAEHQRDYIRLVGVNPQA--KQRVLETIIHRP    
 6 197221.tll0944_from_557_to_650       100.0%  36.2%    LQEYSGEYVRLIGINPAG--KQRVAEILLQQA    
 7 197221.tll0944_from_220_to_313       100.0%  37.2%    LKEHEGEYVRLIGVDPKA--KRRVFEEIIQRP    
 8 203124.Tery_3849_from_573_to_667     100.0%  29.5%    LAHHEGEYVRLIGIDPKA--KRRVLEKIIQQP    
 9 1140.Synpcc7942_1423_from_450_to_539  95.7%  35.1%    LQEHKGKYVRLIGIDPAA--RRRVAELLIQKP    
10 321327.CYA_1614_from_344_to_435       97.9%  35.1%    LAEHTGEYVRLLGIDPKA--KRRLLEKVIQTP    
11 203124.Tery_3849_from_221_to_311      96.8%  30.9%    IQEHSTEYVRMFGIDPKA--KRRISPIMIQRP    
12 321327.CYA_1614_from_450_to_543      100.0%  29.8%    LAEHQGHYVRLLGIDPKG--KKRVYERVIQTP    
13 240292.Ava_3903_from_318_to_410       98.9%  43.6%    LVDYEGEYVRLVGIDPKG--KRRVVETIIQRP    
14 203124.Tery_3849_from_452_to_544      98.9%  33.0%    LAEYNGEYVRLIGIDTQA--KRRVMESLIQQP    
15 203124.Tery_3849_from_338_to_431     100.0%  35.1%    LAEHSGEYVRLIGIDSKV--KRRVAEIIIQRP    
16 1148.sll1031_from_469_to_562         100.0%  35.1%    LADHAGEYVRIIGIDRVG--KRRVLEQIIQRP    
17 240292.Ava_4469_from_461_to_556      100.0%  38.5%    LSEFAGEYVRLIGIDPKA--KRRVLETIIQRP    
18 251221.gvip286_from_224_to_317       100.0%  30.9%    LREHAGEYVRIIGIDPKA--KRRVAETVIQRP    
19 251221.gvip286_from_580_to_668        94.7%  37.2%    LREHAGEYVRLIGIDPKA--KRRVAELIIQRP    
20 1148.sll1031_from_592_to_687         100.0%  38.5%    LADHNGEYVRLLGIDPTA--KRRVLETIIQRP    
21 240292.Ava_4469_from_223_to_315       98.9%  39.4%    LADHSGEYVRLFGIDPKG--KRRVLETIIQRP    
22 1140.Synpcc7942_1423_from_333_to_425  98.9%  37.2%    LSEHEGEYVRLLGIDTAS--RSRVFEALIQDP    
23 251221.gvip286_from_342_to_435       100.0%  36.2%    LQEHAGEYVRIIGIDPKA--KRRVAETIIQHP    
24 197221.tll0944_from_329_to_422       100.0%  41.5%    LQEHAGEYVRLIGIDQKQ--KRRVLEQIIQRP    
25 103690.all0865_from_347_to_440       100.0%  37.2%    IDSHQGEYIRLIGIDPKA--KRRVLESIIQRP    
26 321327.CYA_1614_from_234_to_325       97.9%  36.2%    LAEHRGEYVRLLGIDPKA--KRRVLEQIIQTP    
27 321332.CYB_1794_from_560_to_653      100.0%  39.4%    LAEHQGEYVRLLGIDPKA--KRRVLEQIIQTP    
28 323261.Noc_0332_from_10_to_109       100.0%  17.0%    RKTYPNHYVRVTAFNSHRGVESPCMSFIVNRP    
29 420662.Mpe_A1479_from_10_to_109      100.0%  22.0%    RKTFPNHYIRLMAFDSTRGIESIAMSFIVNRP    
30 420662.Mpe_A2783_from_4_to_103       100.0%  22.0%    RKTFPNHYIRLTAFDSSHGTESVVLSFIINRP    
31 349163.Acry_0825_from_4_to_103       100.0%  19.0%    RRIHDDCYIRLSAFDATNTWESLRISFIVQRP    
32 349102.Rsph17025_2711_from_4_to_103  100.0%  21.0%    RKAFPDHYIRINAFDSTRGFETVTMSFIVNRP    
33 258594.RPA1560_from_4_to_103         100.0%  20.0%    RKIYGDRYIRLSAFDSSHGWESVRLSFIVNRP    
34 78245.Xaut_1917_from_4_to_103        100.0%  25.0%    RNAFPTRYVRVNAFDSTRGWETVRLSFIVQRP    
35 266265.Bxe_B2452_from_4_to_103       100.0%  24.0%    RAAQPQHYIKVNAFDSVRGFETMRLSFIVNRP    
36 288000.BBta_2642_from_13_to_110      100.0%  15.3%    HRANPGQHVRLIGYDNYA--QSQGTAFIVYRA    
37 316057.RPD_1548_from_19_to_116       100.0%  17.3%    RAANPNHHVRLIGYDNVV--QTQGTSMLVYRA    
38 349124.Hhal_1045_from_18_to_115      100.0%  21.4%    HKAHPEHHVRLIGYDNYR--QTQGTAMVIYRG    
39 292415.Tbd_2623_from_18_to_115       100.0%  17.3%    HKANPNNHVRLVGYDNFA--QSQGAAMVIYRG    
40 317025.Tcr_0428_from_17_to_114       100.0%  17.3%    IKANPNNHVRLIGYDNYA--QSQGANMLVKRG    
41 187272.Mlg_2837_from_18_to_115       100.0%  15.3%    HKAHPNNHVRLIGYDNYA--QSQGAAMTVYRA    
42 317025.Tcr_0839_from_14_to_111       100.0%  20.4%    RQAYPNHLIRLVGYDNYT--QCQGHNFVVYRP    
43 32051.SynWH7803_0679_from_15_to_112  100.0%  18.4%    HRAYPDHHVRIVGYDAYT--QSQGACFVVFEG    
44 3702.AT1G67090.1_from_66_to_175      100.0%  14.5%    KKEYPNAFIRIIGFDNTR--QVQCISFIAYKP    
45 1148.slr0012_from_9_to_106           100.0%  22.4%    RSENPNCYIRVIGFDNIK--QCQTVSFIVHKP    
46 1140.Synpcc7942_1427_from_11_to_108  100.0%  21.4%    RSEYGDCYIRVAGFDNIK--QCQTVSFIVHRP    
47 197221.tll1504_from_9_to_106         100.0%  19.4%    RSEYPNCFIRVVAFDNIK--QCQVMSFIVYKP    
48 203124.Tery_4408_from_9_to_106       100.0%  23.5%    RSENPDCFIRVMGFDNVK--QCQVLSFIVHKP    
49 251221.gvip297_from_9_to_106         100.0%  18.4%    RSSYPGCFIRVIGFDNIR--QCQTMSFIVYKP    
50 240292.Ava_3905_from_9_to_106        100.0%  23.5%    RSQYPGHYIRVVGFDNIK--QCQVLSFIVHKP    
51 321327.CYA_1196_from_9_to_106        100.0%  20.4%    RSAYPNCFIRVVGFDNIK--QCQVLSFLVYKP    
   consensus/100%                                        h....tthl+h.uhs.....p..h...hh.ps    
   consensus/90%                                         htt..spalRlhuhDsht..pp.hhp.ll.ps    
   consensus/80%                                         htta.spalRlhGhDsht..pppshphll.+P    
   consensus/70%                                         htpasscYlRllGhDsht..pppshphllp+P