cov    pid  1 [        .         .         .         .         :         .         .         . 80 
 1 AGRI_CHICK     100.0% 100.0%    ATKVFQGVLILEEVEGQELFYTPEMADPKSELFGETARSIESALDELFRNSDVKNDFKSIRVRDLGQSS---AVRVIVES    
 2 AGRI_RAT       100.0%  68.3%    ATKAFQGVLELEGVEGQELFYTPEMADPKSELFGETARSIESTLDDLFRNSDVKKDFWSVRLRELGPGK---LVRAIVDV    
 3 ENTK_HUMAN      95.9%  18.5%    LGQSHEARATFKITSG--VTYNPNLQDKLSVDFKVLAFDLQQMIDEIFLSSNLKNEYKNSRVLQFENGS---IIVVFDLF    
 4 MUC1_HUMAN      93.5%   8.7%    PQLSTGVSFFFLSFHISNLQFNSSLEDPSTDYYQELQRDISEMFLQIYKQG----GFLGLSNIKFRPGS---VVVQLTLA    
 5 Q16615          93.5%   8.7%    PQLSTGVSFFFLSFHISNLQFNSSLEDPSTDYYQELQRDISEMFLQIYKQG----GFLGLSNIKFRPGS---VVVQLTLA    
 6 Q29435          93.5%  11.0%    PQLSIGVSFFFLSFHISNLQFNSSLEDPSTNYYQELQRDISELILQIYKQG----DFLGVSNIKFRPGS---VVVQSTLA    
 7 Q14876          91.9%   9.4%    ETSATQRSSVPSST--EKNAFNSSLEDPSTDYYQELQRDISEMFLQIYKQG----GFLGLSNIKFRPGS---VVVQLTLA    
 8 G2289161        93.5%  10.3%    PQVSAGLSFFFLSFYITNLQFNSSLEDPSSKYYQELQRNVSALISQIYGQ----KNFLGLSGIRFRPGS---VVVDLILA    
 9 MUC1_MOUSE      92.7%  13.5%    PQLSVGVSFFFLFFYIQNHPFNSSLEDPSSNYYQELKRNISGLFLQIFNG-----DFLGISSIKFRSGS---VVVESTVV    
10 Q60528          92.7%  12.7%    PQVSVGVSFFLLSFHIWNHQFNSSLEDPSSNYYQELKRNVSGLFLQVFSR-----AFLGISTIEFRSGS---VVVDSTVI    
11 PGBM_HUMAN      91.1%  12.7%    QMVYFRALVNFTRS----IEYSPQLEDAGSREFREVSEAVVDTLESEYLKIPGDQVVSVVFIKELDGW----VFVELDVG    
12 G2583092        89.4%   9.4%    PTVAASVGVSVTVT---SQEYSEKLQDRKSEEFSNFNKTFTKQMALIYAGI---PEYEGVIIKNLSKGS---IVVDYDVI    
13 C114_MOUSE      90.2%   8.5%    KGTTFPGDISMSVS------ETANLEDENSVGYQELYNSVTDFFETTFNKT----DYGQTVIIKVSTAP---SRSARSAM    
14 Q21281          87.0%   8.4%    ----------MEYDG-EPIQYRTDYSKPDTQAHIEIVDAVKKSVGKIIGKTDVAPRFVTTDVNYITNPKVQNSEWDKGLL    
15 Q21281/2        96.7%  10.1%    AVESWNLPLYVIRDGHEKITYSPSLSNPLNDDHKDLVSRFESGVAQSYDKTPLKGAFVTAEVNEIENPESRKKSWDTGIL    
16 YNX3_CAEEL/2    96.7%  10.1%    VVESWNVPLWVVRDKEKPIVFSESFDNPQTPVYKDYSKRLEKGIEGCYPHTELKNAFVTAEVNDIVNPVLMNASYDTGLL    
17 YNX3_CAEEL      97.6%   8.5%    EVQETPFELRVVTRDQRPLMYSTEFGSQKSPSYVEIVELFEKNMARTFGGTSLAPRYVNTKVDYITHPKTKNSSWDQGLL    
18 SP63_STRPU      91.1%  18.1%    VAQQFAGSFSVTQVGGSNVLYSADLADTDSAAFASLAADVEDALDTVYQASTMADIYLGSEVWGVPEWL-YRGRLHVLFA    
19 P70628          85.4%  14.0%    AEQIAEFSIQLLGK-----QYSEELRDPSSALYRLLVEEFISEVEKAFTGL---PGYKGIHVLDFRSPKENGSGIDVHYA    
20 A38096/2        95.9%   7.0%    RTQTAGALVVFFSLRVTNMLFSEDLFNKNSLEYKALEQRFLELLVPYLQSN--LSGFQNLEILNFRNGS---IVVNSRVK    
   consensus/100%                  .....................p.ph.p..s..a..h...h.t.h...h.t......h.......h...............    
   consensus/90%                   ....h.h.h.h.........as.phts.to..atth.pth.t.h.tha.t.....ta.sh...tht.s......ht..hh    
   consensus/80%                   ...thth.h.h.......h.assphtc.po..atpl.pphpphh.phatt.....tahshp.hphpssp...hhhp.shh    
   consensus/70%                   .t.shtssh.hhth..p.h.asssLpDspothap-ltcslpphh.phatps....sahshpshchpssp...sshphslh    

                     cov    pid 81          .         1         .         .         .     ] 136
 1 AGRI_CHICK     100.0% 100.0%    HFDPATSY---TAADVQAASLKQIRASK-KRTILVKK---PQQEHVKFMD---FDW    
 2 AGRI_RAT       100.0%  68.3%    HFDPTTAF---QASDVGQALLRQIQVSR-PWALAVRR---PLQEHVRFLD---FDW    
 3 ENTK_HUMAN      95.9%  18.5%    FAQWVS------DQNVKEELIQGLEANK-SSQLVTFH---IDLNSVDILDK--LTT    
 4 MUC1_HUMAN      93.5%   8.7%    FREGTIN-----VHDVETQFNQYKTEAASRYNLTISD-----VSVSDVPFPFSAQS    
 5 Q16615          93.5%   8.7%    FREGTIN-----VHDVETQFNQYKTEAASRYNLTISD-----VSVSDVPFPFSAQS    
 6 Q29435          93.5%  11.0%    FREGTTN-----VHDVEAQFNQHKTEAASRYNLTISD-----VSVSDVPFPFSAQS    
 7 Q14876          91.9%   9.4%    FREGTIN-----VHDVETQFNQYKTEAASRYNLTISD-----VSVSDVPFPFSAQS    
 8 G2289161        93.5%  10.3%    FQEGSTN-----EVTVQSQFIQNIPQAA-RYNLNISR-----VTVRDVLSPSSAQS    
 9 MUC1_MOUSE      92.7%  13.5%    FREGTFS-----ASDVKSQLIQHKKEAD-SYNLTISE-----VKVNEMQFPPSAQS    
10 Q60528          92.7%  12.7%    FREGAVN-----ASEVKSQLLQHEQEAE-EYNLAISK-----INVGEMQFPSSAQS    
11 PGBM_HUMAN      91.1%  12.7%    SEGNAD------GAQIQEMLLRVISSG--SVASYVTS-----PQGFQFRRLGTVPQ    
12 G2583092        89.4%   9.4%    LKAKYT-------PGFENTLDTVVKN----LETKIKN--ATEVQVQDVNNNCSALL    
13 C114_MOUSE      90.2%   8.5%    RDATKDV-----SVSVVNIFGADTKETEKSVSSAIETAIKTSGNVKDYVSINLCDH    
14 Q21281          87.0%   8.4%    GNVSVHL-----AGKEEVDKCRFYEQFA--EIVREMG-----GRVDRIKLSDDADL    
15 Q21281/2        96.7%  10.1%    YNFTSHFV----KGSVAEPASVFTDLID--YIQKRND-----FEVGKSKLFISPEQ    
16 YNX3_CAEEL/2    96.7%  10.1%    FNTTVHFR----KGMVHVPSDAYYQLIK--YVTKENN-----NEVGDSELYLNPTQ    
17 YNX3_CAEEL      97.6%   8.5%    FKYEVQTT---KSQSQPIDECELWKQMQ--ASLDRTN-----GAIGGGSLRVASDT    
18 SP63_STRPU      91.1%  18.1%    TEDA--------GQPVLVNSTDATEA----FTTALAA------EAANLGITI-DDS    
19 P70628          85.4%  14.0%    VTFN--------GEAISNTTWDLISL----HSNKVEN-----HGLVELDDKPTAVY    
20 A38096/2        95.9%   7.0%    FAESVPPNVNNAIYMILEDFCTTAYQT---MNLDIDK----YSLDVESGDDANPCK    
   consensus/100%                  ....................................t.........t.........    
   consensus/90%                   ht.............h.....t.hp.....h...htp......th.p.........    
   consensus/80%                   hptss........ttlttth.phhpt....hshthpp......pssch.....sp.    
   consensus/70%                   aptss.......stsVpsph.phhptht..hshtlpp.....hplsch....sspp