cov pid 1 [ . . . . : . . . 80 1 O32041/1-63 100.0% 100.0% QGEAVIAT--DEMNVR-SGPGLS-YGITAEVKKGERYPILKEDG------------DWVQIQLGS------GEKGWV-VS 2 P89924/1-70 100.0% 12.9% KESGTFTL-NTTINLR-TAPFSN-APLIATLSKGQQVSYDGYGIEL-------DGHVWIRQPRAN------GTYGYMATG 3 O31579/1-64 98.4% 21.5% SDTYIIKA--GKLNVR-TEPNHE-GDILGTVSSEQKVKVDRFVN-----------ADWAQIHFK-------GKKAYISTH 4 O32041_1/1-63 98.4% 25.0% STTGTVGV--SSLNVR-ASASHD-AAIITKLDRGTKLTVLNEKN------------GWAHIEVN-------GLKGWVASH 5 O32041_2/1-63 100.0% 28.6% AKKAYIMY--GGTNLR-SDASTS-ASIVERAAKGDSYTITGSKG------------SWYEIKLDN------GQTAYV-AN 6 Q38317/1-67 98.4% 14.7% EYGTFITG--GAINLR-WGATTQ-SSIIAQLPAGVEVKYDAWSRDQ-------AGRVWLRQPRAN------GYGYLV--G 7 1926389/1-68 100.0% 10.3% KESKHYTL-KTAVKLR-TGASTS-SNVITTLPAGTTVKTDQAIIQG--------GYRWVRQPRFN------GHGYLA-TG 8 P60_LISSE/1-65 100.0% 26.2% KTEKSVSA--TWLNVR-SGAGVD-NSIVTSLKGGTKVTVESTEAN-----------GWNKITYGE------GKTGYVNGK 9 P96729/1-65 100.0% 16.9% IDSYLVSA--EALNVR-TKPSAS-SQKADTLHLGDSLKLISFSN-----------ADWAKVKYKN------GKTGFVSTH 10 O32041_3/1-63 98.4% 21.9% SDTVTSTD--PDLRMR-SGPGTS-YEVIGKFPQGSQASVIDKDS------------GWIKISYH-------SATGWVSSE 11 LSTP_STASI/1-69 100.0% 17.4% SESASFTP-NTDIITRTTGPFRS-MPQSGVLKAGQTIHYDEVMKQD--------GHVWVGYTGNS------GQRIYL-PV 12 O56788/1-69 100.0% 11.6% SATFKCTA-RQGIVTRYTGPFTT-CPQAGVLYYGQSVTYDTVCKQD--------GYVWISWTTNG------GQDVWM-PV 13 YGIM_ECOLI/1-67 100.0% 26.9% EETRYVSD-ELNTWVR-SGPGDH-YRLVGTVNAGEEVTLLQTDANT----------NYAQVKDSS------GRTAWIPLK 14 O25843/1-64 100.0% 26.6% PLEYKVAV--SGVNVR-AFPSTK-GKILGLLLKNKSVKVLEIQN------------DWAEIEFSH------ETKGYVFLK 15 P74705/1-64 100.0% 25.0% YKAKVIWN--GGLNVR-TEPDRE-SDSLATINYNDEVVVLATQG------------EWSKLRLSG------GTEGWVRSG 16 BCN5_CLOPE/1-64 98.4% 29.2% ATGEVINV-QSFLNVR-EGAGLY-TNSIGQLRQGNKVNIVAKNG------------DWYKIKYG-------SEYGYVNSG 17 O32421/1-65 100.0% 24.6% EDSGNITI-TENAELR-TGPNAA-YPVIYKVEKGDHFKKIGKVG------------KWIEVEDTS-----SNEKGWI-AG 18 O80064/1-68 100.0% 17.6% AGNYTVAN-VKGNNVR-DGYSTN-SRITGVLPNNATIKYDGAYCIN--------GYRWITYIANS------GQRRYI-AT 19 LYTD_BACSU/1-71 100.0% 19.7% TATSTVTA--DVLNIR-STPEVSPTNVIGQFKKGDKVKVIGQIN------------GWAKINLGWRNASSDEVVQYVDPN 20 O84020/1-64 100.0% 20.3% PFTGEIKG--NRVRLR-LAPHTD-SFIIKELSKGDCLAVLGESK------------DYYVVAAPE------GVRGYVFRT 21 YRAJ_BACSU/1-75 98.4% 22.4% FTVSTSSG--APVNMR-SGPGTN-YPIMLSIPSGSRVPYYCYAYGTTVTGKYGTSNIWDQIQWK-------DSRGVVNIG 22 YNGE_CLOPE/1-65 98.4% 22.7% ATTYNVS---DFLNVR-ERGTTD-SKVVAIIDDGEIFRIDWVDS---------DYIGWYRITTKY------GKNGFV-KA 23 P79668/1-69 98.4% 15.7% EESARFTNGNQPITVRKVGPFLS-CPVGYQFQPGGYCDYTEVMLQD--------GHVWVGYTWE-------GQRYYL-PI 24 P73581/1-59 93.7% 22.2% PQVIVVTS--QTGVAR-TGPGTD-YSRLTPLPQGSQASVTGQDG------------DWLRLDYG----------GWI-KA 25 A60328/1-67 100.0% 11.9% SQGNYVFQ--ETTPVK-NAASMS-SPTQFNFDKGDKVFYDNVLEAD--------GHQWISYVSYS------GIRRYA-PI 26 O51192/1-64 100.0% 18.8% SEVGIIKG--DLVSLY-KVPDNF-SRSWRFLKGNASVYILDSKD------------DFVLIETSY------GLQGWIHKN 27 O84020_1/1-60 92.1% 25.0% -----IEG--EKVNVR-LEPSTS-APILARLSKGTVVKTLGAAQG-----------KWIEIALPK------QCVFYVAKN 28 PK76_SYNY3/1-70 98.4% 28.6% GASATIGGIPGSKNIR-SGPGTD-YGVITQGYTGEGLDILDSSTDS-------SGHVWYKVYHYG-----SGSTGWI-AS 29 YGIM_HAEIN/1-65 100.0% 18.5% AETQYVTE-NLSTFLR-RGAGEQ-FKIAGSIQAGEAVNVLDRQG------------KYTLIRDNK------NREAWILNS 30 BCN5_CLOPE_1/1- 93.7% 17.9% PPNAVVRG--DFLYLR-DVDGNQ-IPGRT-VSDGDEITVLFISNEK--------NIVLVQYPTSS---------GYR-QG 31 O31579_1/1-61 96.8% 14.3% KQTAFYTP--TPENGK-AKQLSS-GTEVT-ILGWGFSENGGFDF------------TWAFVDYG-------GVKGYI-HT 32 C60328/1-62 92.1% 14.5% AQGTYVFT--NKVEVK-NEARTS-SPTQFTFNKGESIYYDSILNAD--------GHQWISYRSYS------GIRRYI-II 33 P96729_1/1-60 95.2% 15.9% TKTKVYT----SADGK-SIKTLP-ADTSVSFLGWSKTNKGGFDF------------DWVFVDYG-------GTTGYM-KT 34 BCN5_CLOPE_2/1- 95.2% 15.2% ENNAEVVG--DELYLR-DANGNL-IPGRS-VSVGDKITVLDVGYTK----------QLALVQYP--------AGDVVRQG 35 C71642 100.0% 29.7% PRFVSIKS--NEVNAR-RGPTTKSAVEWVFIKKGEPVEITAEYE------------QWRQVRDIN------GECGWI-HS consensus/100% ..............hh..............h..........................h.................hh... consensus/90% .....h......h.h+...s........h.h..st.h.h.t................ah.h..........t..hhh... consensus/80% .tsh.ht...t.h.hR.ptsttp...hht.h.tGpphph.t..t.............Whthth........s.ttal..t consensus/70% tpsthlss..pthslR.sssssp..shhs.l.tGpplph.shtt............tWhplpht.......utpsal..s cov pid 81 ] 86 1 O32041/1-63 100.0% 100.0% WLITKE 2 P89924/1-70 100.0% 12.9% ESANGK 3 O31579/1-64 98.4% 21.5% FLMKTA 4 O32041_1/1-63 98.4% 25.0% YLLTSS 5 O32041_2/1-63 100.0% 28.6% WVVQTS 6 Q38317/1-67 98.4% 14.7% RVGNEA 7 1926389/1-68 100.0% 10.3% PSSNTL 8 P60_LISSE/1-65 100.0% 26.2% YLGNAV 9 P96729/1-65 100.0% 16.9% YIVKAA 10 O32041_3/1-63 98.4% 21.9% YVTSGG 11 LSTP_STASI/1-69 100.0% 17.4% RTWNKS 12 O56788/1-69 100.0% 11.6% RTWDKN 13 YGIM_ECOLI/1-67 100.0% 26.9% QLSTEP 14 O25843/1-64 100.0% 26.6% LLKKAE 15 P74705/1-64 100.0% 25.0% NLEKLP 16 BCN5_CLOPE/1-64 98.4% 29.2% YIIILK 17 O32421/1-65 100.0% 24.6% WHTNLD 18 O80064/1-68 100.0% 17.6% GEVDKA 19 LYTD_BACSU/1-71 100.0% 19.7% NFSRDS 20 O84020/1-64 100.0% 20.3% FVLDNV 21 YRAJ_BACSU/1-75 98.4% 22.4% YVSDTY 22 YNGE_CLOPE/1-65 98.4% 22.7% DFVKKI 23 P79668/1-69 98.4% 15.7% RTWNGS 24 P73581/1-59 93.7% 22.2% DETRTL 25 A60328/1-67 100.0% 11.9% AVTIEE 26 O51192/1-64 100.0% 18.8% FVVSLK 27 O84020_1/1-60 92.1% 25.0% FVKNVG 28 PK76_SYNY3/1-70 98.4% 28.6% QLVNF- 29 YGIM_HAEIN/1-65 100.0% 18.5% DLSSTP 30 BCN5_CLOPE_1/1- 93.7% 17.9% YVTNAT 31 O31579_1/1-61 96.8% 14.3% KDLQMR 32 C60328/1-62 92.1% 14.5% G----- 33 P96729_1/1-60 95.2% 15.9% KDLHMT 34 BCN5_CLOPE_2/1- 95.2% 15.2% YVTNAT 35 C71642 100.0% 29.7% SVLSAK consensus/100% ...... consensus/90% ...p.. consensus/80% .hhph. consensus/70% hhhpt.