cov pid 1 [ . . . . : . . . 80 1 Q29110/35-135 100.0% 100.0% LRLVDGGS-----------YCSGSVEILHQG----SWGTVC--DDSW--------DLDDAHVVCRQLGCGKTLSALG--- 2 Q95218/1067-117 100.0% 64.4% LRLVSGNSS--------YGACAGRVEIYHGG----RWGTVC--DDSW--------DTQDAQVVCRQLQCGDAVSAPG--- 3 Q07900/46-147 100.0% 53.9% LRLVDGEN-----------KCSGRVEVKVQE----EWGTVC--NNGW--------SMEAVSVICNQLGCPTAIKAPG--- 4 Q95218/821-921 100.0% 66.3% VRLVNGST-----------RCQGRVEVLYRG----SWGTVC--DDSW--------DINDASVVCRQLGCGWAVSAPG--- 5 JC5759/386-486 100.0% 50.5% IRLVDGEN-----------KKEGRVEVFVNG----QWGTIC--DDGW--------TDKHAAVICRQLGYKGPARART--- 6 WC11_BOVI/1155- 100.0% 63.4% LRLRGGDS-----------ECSGRVEVWHNG----SWGTVC--DDSW--------SLAEAEVVCQQLGCGQALEAVR--- 7 Q07900/154-254 100.0% 60.4% MRLTRGGN-----------MCSGRIEIKFQG----RWGTVC--DDNF--------NIDHASVICRQLECGSAVSFSG--- 8 JC5759/166-266 100.0% 57.4% IRLVGGNS-----------GHEGRVELYHAG----QWGTIC--DDQW--------DNADADVICRQLGLSGIAKAWH--- 9 6088619/24-124 100.0% 57.4% MRLADGGA-----------TNQGRVEIFYRG----QWGTVC--DNLW--------DLTDASVVCRALGFENATQALG--- 10 AAA86417/161-26 99.0% 63.4% LRLVDGGG-----------ACAGRVEMLEHG----EWGSVC--DDTW--------DLEDAHVVCRQLGCGWAVQALP--- 11 Q07900/261-361 100.0% 54.5% LRLVDGVT-----------ECSGRLEVRFQG----EWGTIC--DDGW--------DSYDAAVACKQLGCPTAVTAIG--- 12 WC11_BOVI/28-13 100.0% 48.1% LRLKDGVH-----------RCEGRVEVKHQG----EWGTVD--GYRW--------TLKDASVVCRQLGCGAAIGFPG--- 13 AAF14001/357-45 100.0% 50.5% VRLVGGSG-----------AHEGRVEIFHQG----QWGTIC--DDRW--------DIRAGQVVCRSLGYQEVLAVHK--- 14 AAD01445/246-34 100.0% 56.3% LKLVGGDT-----------PCSGRLEVLHKG----SWGSVC--DDNW--------GEKEDQVVCKQLGCGKSLHPSPK-- 15 Q9Y4K0/58-159 100.0% 48.0% LRLAGQKR----------KHSEGRVEVYYDG----QWGTVC--DDDF--------SIHAAHVVCRELGYVEAKSWTA--- 16 O97375/792-892 100.0% 57.4% IRLAGGRS-----------GMEGRVEISLGG----DWGTVC--DDSW--------GIEDAHVVCRQLGFGPALSAVT--- 17 O43866/138-239 100.0% 44.1% VRLADGPG-----------HCKGRVEVKHQN----QWYTVC--QTGW--------SLRAAKVVCRQLGCGRAVLTQK--- 18 O97375/247-347 100.0% 56.4% IRVVGGSI-----------PTEGRVEVFVNG----AWGTVC--DDLW--------DINDASVACRQLGFGRAISASG--- 19 Q07900/473-573 99.0% 47.1% PRLVGGDI-----------PCSGRVEVKHGD----TWGSIC--DSDF--------SLEAASVLCRELQCGTVVSILG--- 20 O97375/684-784 100.0% 59.4% MRLVGGQN-----------SRQGRLEISINN----QWGTVC--DDSW--------DINDATVVCRQLGFSSAVSAPT--- 21 O96943/1261-136 100.0% 57.4% LRLVNGNT-----------EGEGRVEVFHRG----SWGTVC--DDHW--------SEIDANIVCKELGFARAISASG--- 22 JC5759/273-372 99.0% 43.6% IRLAGGKS-----------THEGRLEVYYKG----QWGTVC--DDGW--------TEMNTYVACRLLGFKYGKQSSV--- 23 O97375/898-998 100.0% 54.5% VRLVGNSR-----------QNEGRVEILISG----RWGTVC--DDLW--------DLRDADVICRQLGYGNAISAPH--- 24 O97375/462-562 100.0% 52.5% VRLVGGLN-----------NREGRVEIFLNN----QWGTVC--DDDW--------GTPDANVVCRQLGYPSGGSARS--- 25 O97375/1104-120 100.0% 52.5% VRLADGNS-----------PAEGRVEVYFDG----QWGTVC--DDNW--------GLQNGHVICRAVGFGKAIAVTD--- 26 SPER_STRP/264-3 100.0% 44.7% IRLMDGSG-----------PHEGRVEIWHDD----AWGTIC--DDGW--------DWADANVVCRQAGYRGAVKASGF-- 27 Q17064/150-254 100.0% 40.0% LRLARGSS-----------ANEGGVEVYWDG----EWGSVC--HSDF--------DKPDGDVVCKQLGYPKGVKEIKG-- 28 Q29111/27-129 99.0% 45.2% LRLKDGRH-----------RCEGRVELKHQG----KWGTVN--QAYW--------GLPGATVVCRQLECGTAVDAPV--- 29 O96943/936-1036 100.0% 57.4% IRLVGGSG-----------PHEGRVEIYYQG----VWGTVC--DDSW--------GQPDADVVCRQLGYANASRATV--- 30 Q9Y5Y8/125-224 99.0% 45.5% VRLRGGAY-----------IGEGRVEVLKNG----EWGTVC--DDKW--------DLVSASVVCRELGFGSAKEAVT--- 31 O96943/1042-114 100.0% 58.4% IRLRDGGS-----------NLEGRVEVYFNK----TWGTVC--DDFW--------DLGDATVVCRQLGYPEAVRAEP--- 32 O97375/1837-193 100.0% 49.5% VRLFGGNN-----------HNEGRVEVFLAG----TWGTIC--DDGW--------DIIDASVVCRHLGYQSASRATT--- 33 Q07900/578-678 99.0% 45.1% IRLVNGKT-----------PCEGRVELKTLG----AWGSLC--NSHW--------DIEDAHVLCQQLKCGVALSTPG--- 34 Q60754/423-518 95.0% 47.5% VRIMGGT-------------NRGRAEVYYNN----EWGTIC--DDDW--------DNNDATVFCRMLGYSRGRALS---- 35 O97378/830-930 100.0% 53.5% VRLVGGSN-----------EAEGRVEIQYNG----VWGTIC--DDSW--------GITDANVVCLMLGFQGASGAPG--- 36 O97375/1001-110 100.0% 59.4% VRIVNGSR-----------SNEGRVEILHDG----SWATVC--DDNW--------DIDDATVVCRQLGFPSANYAVA--- 37 SPER_STRP/43-14 100.0% 38.2% IRLIHGRT-----------ENEGSVEIYHAT----RWGGVC--DWWW--------HMENANVTCKQLGFPGARQFYR--- 38 SPER_STRP/153-2 100.0% 34.3% LRMILGDV-----------PNEGTLETFWDG----AWGSVC--HTDF--------GTPDGNVACRQMGYSRGVKSIKT-- 39 O96943/488-590 100.0% 55.3% VRLVGGSS-----------SMEGRVEVLHNG----VWGTVC--DDSW--------GAEDAQVICHQLGFYGTATAVR--- 40 O96943/711-812 100.0% 57.8% IRLVGGSE-----------ASEGRVEILVQG----QWGTIC--DDIW--------DQADAEVVCRQLGYLSEGATALQ-- 41 O97375/1417-151 100.0% 49.0% VRLSGSNN-----------PNEGLVEVFMNG----LWGTVC--DDAW--------DIDDAEVVCRQLGFEGAVEQAPT-- 42 O96943/1477-157 100.0% 51.0% VRLMNGGN-----------TSAGRVEVNYNG---EEWGTVC--DDNW--------DIKDADVVCRMLDFKSAQSAPR--- 43 O96943/1153-125 100.0% 50.5% LRLAGGTN-----------ATEGRVEIFFNN----TWGTIC--DDSW--------DIRDAEVVCRYLGFESAIEALS--- 44 AAD01445/27-128 99.0% 40.8% VQLVGGAH-----------RCEGRVEVEHNG----QWGTVC--DDGW--------DRRDVAVVCRELNCGAVIQTPR--- 45 O97375/1521-162 100.0% 47.5% VRLVNGQM-----------PNEGRLEIFANG----FWGTVC--DRGW--------DTKDAAVVCRELGFGPAIEATS--- 46 Q07900/368-468 100.0% 43.6% LRLRGGGS-----------RCAGTVEVEIQR----LLGKVC--DRGW--------GLKEADVVCRQLGCGSALKTSY--- 47 O97375/1314-141 100.0% 49.5% LRLVDGQT-----------PNAGRVELRYQG----QWGTVC--DNGW--------DVRDAAVVCRELGFPRAIAANN--- 48 Q9W6N1/28-130 100.0% 53.4% VRLAGVGVR---------NANEGRVEVFHNG----AWGTVC--DDEV--------DLNMANVVCRQLGFQRGLTWAH--- 49 O97375/1209-130 100.0% 56.4% IRLAGGRS-----------KYEGRVEILQNG----AWGTVC--DNQW--------DVHDAAVVCRELGYATTLEATS--- 50 O97375/37-135 98.0% 51.5% VRLVGGSN-----------SLEGRVEVFLNG----QWGTVC--DDLW--------GLSDAGVVCRQLGFDRALAVRS--- 51 AAD01445/141-24 99.0% 41.2% VRLVDGPG-----------HCQGRVEVLHQS----QWSTVC--KAGW--------NLQVSKVVCRQLGCGRALLTYG--- 52 Q9Z175/308-408 100.0% 47.5% VRLKGGAH-----------QGEGRVEVLKAG----TWGTVC--DRKW--------DLQAASVVCPELGFGTAREALS--- 53 Q9W6N1/450-550 100.0% 43.6% VRLKGGPR-----------LGEGRVEVLREG----KWGTVC--DHLW--------DMAAASVVCRELGFGTAKEALT--- 54 Q9Z175/45-146 100.0% 48.0% FRLAGFPR----------KPYEGRVEIQRAG----EWGTIC--DDDF--------TLQAAHVLCRELGFTEATGWTH--- 55 WC11_BOVI/239-3 100.0% 41.2% VRLMTNGS----------SQCEGQVEMNISG----QWRALC--ASHW--------SLANANVICRQLGCGVAISTPG--- 56 O96943/138-239 100.0% 44.1% VRLVEGGD----------MPNRGRVEVYHAD----EWGSIC--DDYF--------GFGEAVVICHELGFPSAEDSHG--- 57 WC11_BOVI/481-5 100.0% 34.7% LRMVSEDQ-----------QCAGWLEVFYNG----TWGSVC--RNPM--------EDITVSTICRQLGCGDSGTLNS--- 58 CAB64652/1051-1 98.0% 40.2% YRLEGGRN-----------SNEGRLEVKHHG----VWGSVC--DDDF--------NLKSAQVACNSMGFFGPAKIEKN-- 59 AAD38337/927-10 99.0% 45.5% VRLVAGPT-----------DREGRVEINYHG----TWGTVC--DDDF--------GVREARVICRQLGFNGTAEVRK--- 60 O97379/302-405 100.0% 44.2% VRLVDGDV-----------PQEGRLEVLYQG----QWGTVC--EDLW--------ERTNAEVVCRMLGYEGADLEYSTT- 61 O97379/420-518 98.0% 46.5% IRLVNGNR-----------PSEGRVEVFRGR----SWGTVC--DDYW--------GIEDANVACKMLGYERAELAYR--- 62 O96943/372-480 100.0% 43.1% VRLVRNNNGSV---DEDGHVFEGRVEVNFYG----VWGTIC--DDYW--------SLADGDVICKMLGFTYADEVGY--- 63 7291334/61-161 100.0% 43.6% IRLVGGDN-----------EYEGNIEVLHNG----KWGAVC--DDEW--------DSTEADIVCRQLGFPGMRRYTR--- 64 O96943/1370-147 98.0% 41.3% VQLIDGPS-----------VHEGRLQIYYNN----EWGTVC--DDQW--------GYDEANVVCKSLGFPGADPDNSLLN 65 NETR_HUMA/170-2 98.0% 35.9% VRLRGGKN-----------EFEGTVEVYASG----VWGTVC--SSHW--------DDSDASVICHQLQLGGKGIAKQ--- 66 O97375/1626-172 100.0% 44.2% IRLVNNQDL---------DQNKGRLEIFHAG----AWGTVC--DDEF--------DILDAIVACRQMGFLMALSVVP--- 67 O97375/1942-204 100.0% 38.6% VRLAGGPN-----------ARQGRVEVLSDN----QWGTVC--KEGW--------DILDANVLCRQLGFFEALPSSI--- 68 O97375/2045-215 100.0% 43.1% VSLVGGRT-----------ISEGFVRIFLNG----RWGTVC--DDNW--------DNTDAGVICRQLGYDGGKAILYSNP 69 WC11_BOVI/134-2 99.0% 38.2% VRLAGGDG-----------PCSGRVEVHSGE----AWIPVS--DGNF--------TLATAQIICAELGCGKAVSVLG--- 70 O17575/1035-114 100.0% 26.6% IRLVDVDGN--------YEVTEGRLEVLVDD----QWGTVC--NRSW--------TPQLTILACNQLGLVADVQYFEN-- 71 CAB64652/899-10 100.0% 40.4% VRLSGGES-----------PNMGRIEVKANG----QWGYVC--DDKF--------GLKDADVVCRELGFQMGAQEVRG-- 72 O97375/1734-183 100.0% 43.6% VRLQDGQH-----------HYQGRVEIMIDN----EWGTVC--DKSF--------DINDASVVCRQVGYPGAVEVVP--- 73 O96943/251-361 100.0% 39.6% IRLNNGTTSSN----ATHGLQYGRVEVFINN----TWGTVC--DDGW--------GIEDATIACRQLGFYGALLASSR-- 74 O17575/127-234 97.0% 22.5% FRLVDGPT-----------VRQGRLQVQFRD----RWRSVCTMVTNW--------TSIDTGTACRSMGYSDGGFWK---- 75 Q9Y4K0/193-302 100.0% 21.8% STYRKRTP-----------VMEGYVEVKEGK----TWKQIC--DKHW--------TAKNSRVVCGMFGFPGERTYNTK-- 76 Q9Y1V3/475-576 100.0% 35.3% IRLRGGSG-----------PFEGHVEVAKGR----KYGLIC--DTRW--------SIREADVVCRQLGFRRGAIDALK-- 77 182607/114-215 98.0% 22.1% VSLKHGNT-----------DSEGIVEVKLVD--QDKTMFIC--KSSW--------SMREANVACLDLGFQQGADTQR--- 78 O96943/598-702 100.0% 36.2% VRLSNGTR-----------PNEGTVEIFYQN----RWGTIC--DIFW--------TLYDANVVCRQLGYDGAYNATH--- 79 O96943/824-927 98.0% 34.9% IRLVRNGTV--------ITQNEGTVEILHNG----TWSAVC--DDYW--------GYTEAVVACHMLGFATAVRAYTR-- 80 O96943/24-133 99.0% 32.4% VRLTNTVTQG------PGSQYEGRVEIYHNG----QWGTIC--SVGF--------DWEDAHVICVMAGFGTAVRPVT--- 81 AAD38337/769-87 97.0% 31.9% LKLSKKA--------------QGSVEVRVYD----RWGYVC--DDGF--------TLEAGNVVCRELGFAGGAIEIKS-- 82 7295758/1071-11 100.0% 30.5% VRLVGGAG-----------ANEGRLQVYLKG----RWGTVC--DYGW--------NVLNAALVCHQLGYSLNPQDWRLLR 83 7291334/193-299 97.0% 35.5% VRLRGGRS-----------RIEGRVEVSLDGG---RWGSVC--ADGW--------SLLEANVVCRQLGLGYASEAFQT-- 84 Q07900/819-932 99.0% 33.7% LRLTSEASR---------EACAGRLEVFYNG----AWGTVG--KSSM--------SETTVGVVCRQLGCADKGKINP--- 85 7295758/191-295 99.0% 30.2% IRLVDGPT-----------PVEGRLQLFHKG----AWRSVCSNSRNW--------TLADYGVACKQLGYRGGRFWN---- 86 Q61003/264-360 95.0% 33.3% WRLTGGID-----------SCEGQVEVYFRG----VWSTVC--DSEW--------YPSEAKVLCRSLGCGSAVARP---- 87 Q9Y5Y8/234-343 99.0% 33.3% LRLNGGRN-----------PYEGRVEVLVERNGSLVWGMVC--GQNW--------GIVEAMVVCRQLGLGFASNAFQE-- 88 Q9W6N1/560-668 98.0% 31.5% VRLAGGRE-----------PSEGRVEVLMEVGGVRRWGSIC--SENW--------GINEAMVVCRQLGLGFASSAHQE-- 89 7302051/33-145 99.0% 26.3% VRLATNKAALA----GIQVLREGRVEVSFDF--GASWGTIC--STSW--------SMREANVVCRQLGLGYASKASQ--- 90 Q61129/117-220 96.0% 21.3% VSLIYGRT-----------KTEGLVQVKLVD--QDERMFIC--KNSW--------SMAEANVACVDLGFPLGVRDIQG-- 91 Q9Z175/170-283 98.0% 24.1% VRLRPAVEWGRRPL----PVTEGLVEVRLPE----GWSQVC--DKGW--------SAHNSHVVCGMLGFPGEKRVNMA-- 92 Q9Z175/418-526 98.0% 32.4% IRLSGGRS-----------RYEGRVEVQIGIPGHLRWGLIC--GDDW--------GTLEAMVACRQLGLGYANHGLQE-- 93 O97191/48-153 97.0% 31.2% IRVEDGTVGT-------VDSVSGNIEVCYTG----LWGTVC--ATVW--------DETNGLVACRQLGYAELEVTEK--- 94 SPER_STRP/382-5 96.0% 29.6% VRIVGMGQ------------GQGRVEVSLGN----GWGRVC--DPDW--------SDHEAKTVCYHAGYKWGASRAAG-- 95 AAA86417/45-156 93.1% 27.7% VRLTNGSS-----------SCSGTVEVRLEA----SWEPAC--GALW--------DSRAAEAVCRALGCGGAEAASQLAP 96 Q9Y1V3/156-262 96.0% 22.0% --LTKNPR---------GPCGYGVVLMYYRE--LGEWGTIC--GDTW--------KIGAARVVCNYLKFRNAKALKL--- 97 Q17064/380-486 96.0% 25.7% VRIVGMGN------------GQGRVEVSFGN----GWGRVC--NERL--------TDLEARTFCHHAGYGWETSRLAT-- 98 Q03711/112-214 94.1% 22.0% FTLTQNGE-----------PGKGIIKVKLP--TFEQELFLC--GKQW--------SNREANVVCRQLGSTKGADASAS-- 99 CD5_MOUSE/34-13 91.1% 27.5% VMLSGSNS-----------KCQGQVEIQMEN----KWKTVC--SSSWRLSQDHSKNAQQASAVCKQLRCGDPLALGP--- 100 O73906/34-119 85.1% 27.7% LRLSGGGC-----------RCAGLLEVQMSS----RWSPVC--WDGV-----------SPGSVCEQLGCRPPAKLSS--- 101 CD5_HUMAN/35-13 89.1% 23.6% ARLTRSNS-----------KCQGQLEVYLKD----GWHMVC--SQSWGRSSKQWEDPSQASKVCQRLNCGVPLSLGPF-- 102 CD5_BOVIN/34-13 92.1% 20.2% MRLSGSGS-----------RCQGRLEVSNGT----EWYAVH--SQSWGQLSLYQVAPRQFLKLCQELQCRDPLLLSS--- 103 AAF21308/148-24 91.1% 12.6% VRLYGQSF---------------ILQVYSSQ--RKAWYPVC--QDDW--------SENYGRAACKDMGYKNNFYSSQ--- 104 AAF31436 88.1% 15.5% VRLSKDRS---------------TLQVLDSA--TGNWFSAC--FDNF--------TEALAETACRQMGYSSKPTFRA--- 105 ENTK_BOVI/694-7 90.1% 23.8% VRLFNGTT-----------DSSGLVQFRIQS----IWHVAC--AENW--------TTQISDDVCQLLGLGTGNSSVP--- 106 Q9Z319 94.1% 16.7% VTLSKNGN------------SSSLLTVHKSA----KEHHVC--ADGW--------RETLSQLACKQMGLGEPSVTKL--- 107 Q9Y5Q5 95.0% 16.7% VTLSINVN------------SSSFLMVHRAA----TEHHVC--ADGW--------QEILSQLACKQMGLGEPSVTKL--- 108 7304194 95.0% 15.2% LRLSERNGD----------VGTGVLEVYRIG--QRQWMPAC--VKNW-------DRAVSPSAVCSILGYSAVNATSVL-- 109 HEPS_RAT 90.1% 13.0% VQLSPGDS---------------RLLVLDKT--EGTWRLLC--SSRS--------NARVAGLGCEEMGFLRALAHSEL-- consensus/100% ..h.....................h.h............ht.....................hC..ht............ consensus/90% hpL.ts...............tGhlpl.htt.....Wt.lC..tp.a........s..tsthhCp.hsh..s........ consensus/80% lRLhsstt.............pGplElhhts....tWuslC..spta........s..putlhC+pLGh.ts.th..... consensus/70% lRLssGss............tpG+VElhhps....pWGoVC..cstW........shtsApVlC+pLGhstuhts.t... cov pid 81 . 1 . . . . : . 160 1 Q29110/35-135 100.0% 100.0% ---------------SAHFGAGSG-----------RIWLDDVNCTGKES-HLWQCPS---RGWGQHN---CRH------K 2 Q95218/1067-117 100.0% 64.4% ---------------GAYFGSGSG-----------PITLDDVNCSGTEA-TLWQCRS---QSWFSHN---CGH------H 3 Q07900/46-147 100.0% 53.9% ---------------WANSSAGSG-----------RIWMDHVSCRGNES-ALWDCKH---DGWGKHSN--CTH------Q 4 Q95218/821-921 100.0% 66.3% ---------------SARFGQGSG-----------SIFLDEVSCSGQEP-YLWNCSH---RGWLSHN---CGH------Y 5 JC5759/386-486 100.0% 50.5% ---------------MAYFGEGKG-----------PIHMDNVKCTGNEK-ALADCVK---QDIGRHN---CRH------S 6 WC11_BOVI/1155- 100.0% 63.4% ---------------SAAFGPGNG-----------SIWLDEVQCGGRES-SLWDCVA---EPWGQSD---CKH------E 7 Q07900/154-254 100.0% 60.4% ---------------SSNFGEGSG-----------PIWFDDLICNGNES-ALWNCKH---QGWGKHN---CDH------A 8 JC5759/166-266 100.0% 57.4% ---------------QAHFGEGSG-----------PILLDEVRCTGNEM-SIEQCPK---SSWGEHN---CGH------K 9 6088619/24-124 100.0% 57.4% ---------------RAAFGQGSG-----------PIMLDEVQCTGTEA-SLADCKS---LGWLKSN---CRH------E 10 AAA86417/161-26 99.0% 63.4% ---------------GLHFTPGRG-----------PIHRDQVNCSGAEA-YLWDCP----GLPGQHY---CGH------K 11 Q07900/261-361 100.0% 54.5% ---------------RVNASKGFG-----------HIWLDSVSCQGHEP-AVWQCKH---HEWGKHY---CNH------N 12 WC11_BOVI/28-13 100.0% 48.1% ---------------GAYFGPGLG-----------PIWLLYTSCEGTES-TVSDCEH---SNIKDYRNDGYNH------G 13 AAF14001/357-45 100.0% 50.5% ---------------RAHFGQGTG-----------PIWLNEVMCFGRES-SIENCKI---NQWGVLS---CSH------S 14 AAD01445/246-34 100.0% 56.3% --------------TRKIYGPGAG-----------RIWLDDVNCSGKEQ-SLEFCRH---RLWGYHD---CTH------K 15 Q9Y4K0/58-159 100.0% 48.0% ---------------SSSYGKGEG-----------PIWLDNLHCTGNEA-TLAACTS---NGWGVTD---CKH------T 16 O97375/792-892 100.0% 57.4% ---------------AASFGQGSG-----------SILMDNVQCSGDEA-TIAECSH---NGIGIHN---CGH------Q 17 O43866/138-239 100.0% 44.1% ---------------RCNKHAYGR----------KPIWLSQMSCSGREA-TLQDCPS---GPWGKNT---CNH------D 18 O97375/247-347 100.0% 56.4% ---------------GASYGQGSG-----------SIFLDNLACTGAES-NLLSCPH---NGVGSHN---CGH------G 19 Q07900/473-573 99.0% 47.1% ---------------GAHFGEGNG-----------QIWAEEFQCEGHES-HLSLCPVA--PRPEGT----CSH------S 20 O97375/684-784 100.0% 59.4% ---------------SAHFGQGSG-----------TIWLDDVSCAGNEN-SLMDCGH---RGLGVHN---CAH------A 21 O96943/1261-136 100.0% 57.4% ---------------FATFGEGSG-----------TIWLDDVQCDGTEA-TIFNCPS---SGWGNHN---CLH------S 22 JC5759/273-372 99.0% 43.6% ----------------NHFDGSNR-----------PIWLDDVSCSGKEV-SFIQCSR---RQWGRHD---CSH------R 23 O97375/898-998 100.0% 54.5% ---------------SSFFGPGRG-----------DILLDDVSCTGSED-DILDCSH---PPIGTNN---CGH------S 24 O97375/462-562 100.0% 52.5% ---------------SAYFGRGSV-----------PILLDNVGCSGNER-SLELCSN---NGIGVHN---CGH------Q 25 O97375/1104-120 100.0% 52.5% ---------------RARFGRGQG-----------PIYLDNINCTGSET-SLLNCSH---SGLGTHD---CDH------S 26 SPER_STRP/264-3 100.0% 44.7% --------------KGEDFGFTWA-----------PIHTSFVMCTGVED-RLIDCIL---RDGWTHS---CYH------V 27 Q17064/150-254 100.0% 40.0% ---------------DAYFGFTEG-----------QIIWDSVSCEGTEK-HFSECPNP--LQPFEHA---CPYNH----A 28 Q29111/27-129 99.0% 45.2% ---------------ASYFGRGDG-----------PIWLYAF-CEGTES-TLTDCRH---PNITDYRTKGFSH------D 29 O96943/936-1036 100.0% 57.4% ---------------RAEFGRGTG-----------EIWLDNVACTGFEN-SLDECRS---NGWGDHN---CGH------R 30 Q9Y5Y8/125-224 99.0% 45.5% ---------------GSRLGQGIG-----------PIHLNEIQCTGNEK-SIIDCKF---NAESQG----CNH------E 31 O96943/1042-114 100.0% 58.4% ---------------FARFGSGEG-----------PIWLDDVACVGTET-SLFECSS---SGLGQHN---CQH------F 32 O97375/1837-193 100.0% 49.5% ---------------NAYFGGGEG-----------PIYMDGVSCDGDET-DLSMCHH---AGIGFHN---CGH------Q 33 Q07900/578-678 99.0% 45.1% ---------------GARFGKGNG-----------QIWRHMFHCTGTEQ-HMGDCPVT--ALGASL----CPS------E 34 Q60754/423-518 95.0% 47.5% -----------------SYGGGSG-----------NIWLDNVNCRGTEN-SLWDCSK---NSWGNHN---CVH------N 35 O97378/830-930 100.0% 53.5% ---------------SAHFGQGTG-----------PIQLDDVGCTGVEQ-TIFDCAH---PPFGVHN---CAH------Y 36 O97375/1001-110 100.0% 59.4% ---------------HAVFGQGSG-----------EIVLDDVECTGDEV-SLIECQH---AGLGTNN---CGH------S 37 SPER_STRP/43-14 100.0% 38.2% ---------------RAYFGAHVT-----------TFWVYKMNCLGNET-RLEDCYH---RPYGRPWL--CNA------Q 38 SPER_STRP/153-2 100.0% 34.3% ---------------DGHFGFSTG-----------PIILDAVDCEGTEA-HITECNMP--VTPYQHA---CPYTH----N 39 O96943/488-590 100.0% 55.3% ---------------GTQFGFASS---------SQPIWLDDVGCTGSEM-YLSDCSS---SGFGNHN---CYH------Y 40 O96943/711-812 100.0% 57.8% ---------------FAHFGEGSG-----------PIVLDDVNCTGLEL-YVTDCPS---SGFYIHN---CAH------S 41 O97375/1417-151 100.0% 49.0% ---------------KDRFGPGSG-----------PIHMSDVRCSGHES-ELSECYH---SVLGQHS---CGH------Q 42 O96943/1477-157 100.0% 51.0% ---------------EAFFGDGLG-----------VIWFDDFLCSGYED-SLLECSH---AGVKVHN---CRH------S 43 O96943/1153-125 100.0% 50.5% ---------------NGYFGAGDP---------DQPIWLDDVDCFGSET-IITSCLT---SALGEHN---CAH------Y 44 AAD01445/27-128 99.0% 40.8% ---------------GASYQPPAS---------EQRVLIQGVDCNGTED-TLAQCE----LNYYVFD---CSH------E 45 O97375/1521-162 100.0% 47.5% ---------------GARFGQGTG-----------AIALSNVQCDESED-RLIDCAH---ETLGVHN---CNH------E 46 Q07900/368-468 100.0% 43.6% ---------------QVYSKIQAT-----------NTWLFLSSCNGNET-SLWDCKN---WQWGGLT---CDH------Y 47 O97375/1314-141 100.0% 49.5% ---------------QAFYGPGIG-----------TVLLSDISCGGQEA-TLFSCPN---SGVGLNS---CNH------G 48 Q9W6N1/28-130 100.0% 53.4% ---------------SAKFGEGQG-----------LIWLDNVRCTGTEL-SIANCRS---NGWGIND---CTH------A 49 O97375/1209-130 100.0% 56.4% ---------------QASFGQGTG-----------AILLDDLRCSGREI-RLVDCPH---NGLGQHN---CQH------L 50 O97375/37-135 98.0% 51.5% ---------------SAFFGQGSG-----------PILMDNVACSGDER-SLSSCAY-----VSSHN---CAH------S 51 AAD01445/141-24 99.0% 41.2% ---------------SCNKNTQGK----------GPIWMGKMSCSGQEA-NLRSCLL---SRLENN----CTH------G 52 Q9Z175/308-408 100.0% 47.5% ---------------GARMGQGMG-----------AIHLSEVRCSGQEP-SLWRCPS---KNITAED---CSH------S 53 Q9W6N1/450-550 100.0% 43.6% ---------------KAHLGQGTG-----------PIHMNSVQCTGREK-SITECTY---RQVPLYS---CKH------N 54 Q9Z175/45-146 100.0% 48.0% ---------------SAKYGPGTG-----------RIWLDNLSCRGTEG-SVTECAS---RGWGNSD---CTH------D 55 WC11_BOVI/239-3 100.0% 41.2% ---------------GPHLVEEGD-----------QILTARFHCSGAES-FLWSCPV---TALGGPD---CSH------G 56 O96943/138-239 100.0% 44.1% ---------------GGTFPQGDG-----------LIWMDNLQCTGHES-SIAECTF---PGWGEHN---CQH------R 57 WC11_BOVI/481-5 100.0% 34.7% ---------------SVALREGFR-----------PQWVDRIQCRKTDT-SLWQCPS---DPWNYNS---CSP------K 58 CAB64652/1051-1 98.0% 40.2% -----------------IFGNSNG-----------PIWLDQVMCFGNET-SIDQCNH---WNWGEHN---CNH------T 59 AAD38337/927-10 99.0% 45.5% ----------------SVYPPGVG-----------QIWLDQVACNGTEP-SIEDCVH---WHWGEHN---CAH------T 60 O97379/302-405 100.0% 44.2% --------------DLWWLIKGSG-----------PILMDNVRCQGNES-SLDECSH---LGLGVHN---CDH------S 61 O97379/420-518 98.0% 46.5% ---------------EAKFGEGDG-----------AILLDDVSCTGREP-SLFACYH---SDFAD-----CSH------A 62 O96943/372-480 100.0% 43.1% ---------------SGAFGIGTG-----------PIWMDDVQCDGTET-RIDHCDF---PGWGVHN---CYH------F 63 7291334/61-161 100.0% 43.6% ---------------SGFFGPARR-----------RFWMDNLFCEGHEQ-ELVDCHF---EGWGEND---CEP------G 64 O96943/1370-147 98.0% 41.3% -----------------SYGPGSG-----------HIWLDDVDCRGDEF-FIQDCNH---ADIGENN---CGH------Y 65 NETR_HUMA/170-2 98.0% 35.9% -----------------TPFSGLG---------LIPIYWSNVRCRGDEE-NILLCEK---DIWQGGV---CPQ------K 66 O97375/1626-172 100.0% 44.2% ---------------AAYYGDGAG-----------PIHLDNMRCTGGEN-NLMECPRG--NARAEHD---CQH------S 67 O97375/1942-204 100.0% 38.6% ---------------YRSYGAGVG-----------PIHWHHMRCLGTEL-SLADCQE---GSGSSLS---CSH------S 68 O97375/2045-215 100.0% 43.1% LLR----------TSSTNFFSDAV-----------PIWFDNVHCSGEEA-ALFDCPH---SGVGNHN---CDH------T 69 WC11_BOVI/134-2 99.0% 38.2% ---------------HELFRESSA-----------QVWAEEFRCEGEEP-ELWVCPRV--PCPGGT----CHH------S 70 O17575/1035-114 100.0% 26.6% ---------------WRIFPEPGD----------LPMIMDNIRCEENEV-DITKCRH---DGVERNCAAGCRS------T 71 CAB64652/899-10 100.0% 40.4% --------------SSFYAPPNQD----------FNYLMDEVECHGNET-KLGQCAF---KGWGVHN---CGV------D 72 O97375/1734-183 100.0% 43.6% ---------------KAGFGNGTG-----------PIHAGYLECTGDES-DLTDCRT---GSATIGD---CLH------S 73 O96943/251-361 100.0% 39.6% --------------SEYAQVAPSS----------VPIYWDEVLCHGDEV-ALSECHH---RTTGVHD---CSH------Y 74 O17575/127-234 97.0% 22.5% -----------------WFRRNND---------TYPFVMPKPDCHGAAK-NLWDCPAFSNPQKIRLSENLCQG------E 75 Q9Y4K0/193-302 100.0% 21.8% --------------VYKMFASRRK----------QRYWPFSMDCTGTEA-HISSCKLGPQVSLDPMKNVTCEN------G 76 Q9Y1V3/475-576 100.0% 35.3% ---------------GGAFGRIDR-----------RYVLDNVRCNGREE-SLENCRH---SGWNKAS---CSI------D 77 182607/114-215 98.0% 22.1% ---------------RFKLSDLSI----------NSTECLHVHCRGLET-SLAECT----FTKRRT----MGY------Q 78 O96943/598-702 100.0% 36.2% ---------------SSYYGDSGL-----------TTVTAYTDCFGQES-QLANCTGFRYPPYIPSWY--CGD------N 79 O96943/824-927 98.0% 34.9% -----------------SFHGAVD----------GDTFLDNVRCAGTER-EIFDCYH---SSYISRN---CDR------T 80 O96943/24-133 99.0% 32.4% ---------------DGFYGPASS---------SLPILLENVGCNGNEG-TLLNCSNVAWHSVGSE----CSH------Q 81 AAD38337/769-87 97.0% 31.9% ---------------HSYFPPNGTDPDEPEKQHGPFFMMDAVRCQGNES-SLRECSF---NGWGVSD---CNR------E 82 7295758/1071-11 100.0% 30.5% ---------------SQLPNAGTS----------EDILMANVRCTLQDR-DVTKCRA---EYEFENT---CSH------E 83 7291334/193-299 97.0% 35.5% -----------------DFFGGFN---------VSRPVLSGSECYGNET-ELADCLHHDASQGIIS----CHG----NRQ 84 Q07900/819-932 99.0% 33.7% ----------------ASLDKAMS----------IPMWVDNVQCPKGPD-TLWQCPS---SPWEKRL---ASP------S 85 7295758/191-295 99.0% 30.2% ---------------WVERTPGYY----------PRLLYEQPKCKGGEG-SLQDCAWT-SRQMGAGA---CDY------H 86 Q61003/264-360 95.0% 33.3% ---------------RAVPHS--------------LDGRMYYSCKGQEP-ALSTCS----WRFNNSNL--CSQ------S 87 Q9Y5Y8/234-343 99.0% 33.3% --------------TWYWHGDVNS----------NKVVMSGVKCSGTEL-SLAHCRH---DGEDVA----CPQGG---VQ 88 Q9W6N1/560-668 98.0% 31.5% --------------TWYWPGSSDA----------GEVVLSGTHCIGTEM-SIQQCR----RNTNVY----CPRGG---DG 89 7302051/33-145 99.0% 26.3% ---------------GTEHGDSRK----------YPWGMVGTLCRGTER-RLADCIR---ESHYPNL---CNARNH---- 90 Q61129/117-220 96.0% 21.3% ---------------SFNISGNLH---------INDTECLHVHCRGVET-SLAECA----FTKRRT----ELSNG----- 91 Q9Z175/170-283 98.0% 24.1% --------------FYRMLAQKKQ----------HSFGLHSVACVGTEA-HLSLCSL---EFYRANDTTRCSGGN----- 92 Q9Z175/418-526 98.0% 32.4% --------------TWYWDSGNVT-----------EVVMSGVRCTGSEL-SLNQCAH---HSSHIT----CKKTGTR--- 93 O97191/48-153 97.0% 31.2% ---------------RPLMGDEAR----------LQSLLSGVNCSGSEE-RLADCDH---DGVDMGDTTGCA-------- 94 SPER_STRP/382-5 96.0% 29.6% ---------------SAEVSAPFDL--------EAPFIIDGITCSGVENETLSQCQMK--VSADMT----CATG------ 95 AAA86417/45-156 93.1% 27.7% PTPELP----PPPAAGNTSVAANAT----------LAGAPALLCSGAEW---RLCEV-----VEHA----CRSDGR---- 96 Q9Y1V3/156-262 96.0% 22.0% ---------------GPNKVSDETE--------EMPSYIRQIRCNGGEY-ALPDCTG---DKLKRNYE--CRTDK----- 97 Q17064/380-486 96.0% 25.7% -------------ASEFSAPPQAD---------EVPFILGDVACSGVQNETLNDCTLT--LSADFT----CALG------ 98 Q03711/112-214 94.1% 22.0% ---------------DKVFSLVTE---------KPPEHCIQATCRGLEN-SLAECAL------RKLP---MQDNQ----- 99 CD5_MOUSE/34-13 91.1% 27.5% ------------------FPSLN-------------RPQNQVFCQGSPW-SISNCNN----TSSQDQ---CL-------- 100 O73906/34-119 85.1% 27.7% -----------------APPDLEE------------QQAWAMQCKGME-----RCQW------KAAN---CSQ------- 101 CD5_HUMAN/35-13 89.1% 23.6% ------------------LVTYTP--------------QSSIICYGQLG-SFSNCSH-----SRNDM---CH-------- 102 CD5_BOVIN/34-13 92.1% 20.2% ---------------SRYFKEVQF--------------QKLIICHGQLG-SFSNCSL-----NRGRQ---VD-------- 103 AAF21308/148-24 91.1% 12.6% ---------------GIPDQSGAT-----------SFMKLNVSSGNVDL----YKKL-----YHSDS---CSS------R 104 AAF31436 88.1% 15.5% ----------------VEIGPDQD------------LDVVEITENSQE-----LRMR-----NSSGP---CLS------G 105 ENTK_BOVI/694-7 90.1% 23.8% -----------------TFSTGGG-----------PYVNLNTAPNGSLI----LTPS-----QQ------CLE------D 106 Q9Z319 94.1% 16.7% -----------------IPGQEGQ-----------QWLRLYPNWENLNGSTLQELLV-----YRHS----CPS------R 107 Q9Y5Q5 95.0% 16.7% ----------------IQEQEKEP-----------RWLTLHSNWESLNGTTLHELLV-----NGQS----CES------R 108 7304194 95.0% 15.2% -----------------TQLTHRP---------LLATVNVSTDIWKMYAKRKSTLMQ-----EFAN----CKKTED---Y 109 HEPS_RAT 90.1% 13.0% ---------------DVRTAGANG---------TSGFFCVDEGGLPLAQ----RLLD-----VISV--CDCPR------G consensus/100% ......................................................h......................... consensus/90% ....................................hhh.th.C.u.p...h..C...............C......... consensus/80% ..................hs.sts............hhhtthtCpGtE..pl.pC.......ht.t....Ctp....... consensus/70% ...............thhhststs............hhhsplpCpGpEt.pl.pC.h....tht.pt...Ctp......t cov pid 161 ] 168 1 Q29110/35-135 100.0% 100.0% EDAGVICS 2 Q95218/1067-117 100.0% 64.4% EDASVICT 3 Q07900/46-147 100.0% 53.9% QDAGVTCS 4 Q95218/821-921 100.0% 66.3% EDAGVICS 5 JC5759/386-486 100.0% 50.5% EDAGVICD 6 WC11_BOVI/1155- 100.0% 63.4% EDAGVRCS 7 Q07900/154-254 100.0% 60.4% EDAGVICS 8 JC5759/166-266 100.0% 57.4% EDAGVSCV 9 6088619/24-124 100.0% 57.4% RDAGVVCT 10 AAA86417/161-26 99.0% 63.4% EDAGVVCS 11 Q07900/261-361 100.0% 54.5% EDAGVTCS 12 WC11_BOVI/28-13 100.0% 48.1% RDAGVVCS 13 AAF14001/357-45 100.0% 50.5% EDAGVTCT 14 AAD01445/246-34 100.0% 56.3% EDVEVICT 15 Q9Y4K0/58-159 100.0% 48.0% EDVGVVCS 16 O97375/792-892 100.0% 57.4% EDAGVVCS 17 O43866/138-239 100.0% 44.1% EDTWVECE 18 O97375/247-347 100.0% 56.4% EDAGVLCS 19 Q07900/473-573 99.0% 47.1% RDVGVVCS 20 O97375/684-784 100.0% 59.4% EDAGVVCI 21 O96943/1261-136 100.0% 57.4% EDASAICT 22 JC5759/273-372 99.0% 43.6% EDVGLTCY 23 O97375/898-998 100.0% 54.5% EDAGVVCD 24 O97375/462-562 100.0% 52.5% EDASVVCT 25 O97375/1104-120 100.0% 52.5% EDAGVICS 26 SPER_STRP/264-3 100.0% 44.7% EDASVVCA 27 Q17064/150-254 100.0% 40.0% WDVGVICK 28 Q29111/27-129 99.0% 45.2% WDAGAVCS 29 O96943/936-1036 100.0% 57.4% EDAGAVCQ 30 Q9Y5Y8/125-224 99.0% 45.5% EDAGVRCN 31 O96943/1042-114 100.0% 58.4% EDAGVECN 32 O97375/1837-193 100.0% 49.5% EDAGVVCS 33 Q07900/578-678 99.0% 45.1% QVASVICS 34 Q60754/423-518 95.0% 47.5% EDAGVECS 35 O97378/830-930 100.0% 53.5% EDAGVVCI 36 O97375/1001-110 100.0% 59.4% EDAGVICS 37 SPER_STRP/43-14 100.0% 38.2% WAAGVECL 38 SPER_STRP/153-2 100.0% 34.3% WDVGVVCK 39 O96943/488-590 100.0% 55.3% EDAGVVCQ 40 O96943/711-812 100.0% 57.8% EDAGVRCN 41 O97375/1417-151 100.0% 49.0% NDAGVVCS 42 O96943/1477-157 100.0% 51.0% EDASVVCS 43 O96943/1153-125 100.0% 50.5% EDAGVRCY 44 AAD01445/27-128 99.0% 40.8% EDAGAQCE 45 O97375/1521-162 100.0% 47.5% MDAGVVCR 46 Q07900/368-468 100.0% 43.6% EEAKITCS 47 O97375/1314-141 100.0% 49.5% EDAGVVCM 48 Q9W6N1/28-130 100.0% 53.4% EDLGVICS 49 O97375/1209-130 100.0% 56.4% EDAGVVCQ 50 O97375/37-135 98.0% 51.5% EDAGVVCA 51 AAD01445/141-24 99.0% 41.2% EDTWMECE 52 Q9Z175/308-408 100.0% 47.5% QDAGVRCN 53 Q9W6N1/450-550 100.0% 43.6% QDVAVRCN 54 Q9Z175/45-146 100.0% 48.0% EDAGVICK 55 WC11_BOVI/239-3 100.0% 41.2% NTASVICS 56 O96943/138-239 100.0% 44.1% EDAGVTCT 57 WC11_BOVI/481-5 100.0% 34.7% EEAYIWCA 58 CAB64652/1051-1 98.0% 40.2% EDVALHCS 59 AAD38337/927-10 99.0% 45.5% EDVGVRCG 60 O97379/302-405 100.0% 44.2% KDVGVTCR 61 O97379/420-518 98.0% 46.5% EDAGVKCL 62 O96943/372-480 100.0% 43.1% EDASVVCS 63 7291334/61-161 100.0% 43.6% EAAGVVCY 64 O96943/1370-147 98.0% 41.3% EDVGLRCL 65 NETR_HUMA/170-2 98.0% 35.9% MAAAVTCS 66 O97375/1626-172 100.0% 44.2% EDVGIVCF 67 O97375/1942-204 100.0% 38.6% SDAAAVCS 68 O97375/2045-215 100.0% 43.1% EDVYVRCE 69 WC11_BOVI/134-2 99.0% 38.2% GSAQVVCS 70 O17575/1035-114 100.0% 26.6% EVVGLRCL 71 CAB64652/899-10 100.0% 40.4% EVAGVTCK 72 O97375/1734-183 100.0% 43.6% DDVGVICQ 73 O96943/251-361 100.0% 39.6% EDAGVFCT 74 O17575/127-234 97.0% 22.5% DDIGIYCW 75 Q9Y4K0/193-302 100.0% 21.8% LPAVVSCV 76 Q9Y1V3/475-576 100.0% 35.3% HEVGVICR 77 182607/114-215 98.0% 22.1% DFADVVCY 78 O96943/598-702 100.0% 36.2% TVAGVMCI 79 O96943/824-927 98.0% 34.9% QQAGVACT 80 O96943/24-133 99.0% 32.4% NNSGVVCT 81 AAD38337/769-87 97.0% 31.9% EVVGVVCR 82 7295758/1071-11 100.0% 30.5% NDVGLRCY 83 7291334/193-299 97.0% 35.5% HVAAVICD 84 Q07900/819-932 99.0% 33.7% EETWITCD 85 7295758/191-295 99.0% 30.2% NDLGIQCL 86 Q61003/264-360 95.0% 33.3% RAARVVCS 87 Q9Y5Y8/234-343 99.0% 33.3% YGAGVACS 88 Q9W6N1/560-668 98.0% 31.5% RAAGVTCV 89 7302051/33-145 99.0% 26.3% NVSIAACV 90 Q61129/117-220 96.0% 21.3% -LAGVVCY 91 Q9Z175/170-283 98.0% 24.1% -PAVVSCV 92 Q9Z175/418-526 98.0% 32.4% FTAGVICS 93 O97191/48-153 97.0% 31.2% -RAFVRCL 94 SPER_STRP/382-5 96.0% 29.6% -DVGVVCE 95 AAA86417/45-156 93.1% 27.7% -RARVTCA 96 Q9Y1V3/156-262 96.0% 22.0% -LAAVKCT 97 Q17064/380-486 96.0% 25.7% -DTGVVCE 98 Q03711/112-214 94.1% 22.0% -VAKVTCY 99 CD5_MOUSE/34-13 91.1% 27.5% -PLSLICL 100 O73906/34-119 85.1% 27.7% -HAVVTCS 101 CD5_HUMAN/35-13 89.1% 23.6% -SLGLTCL 102 CD5_BOVIN/34-13 92.1% 20.2% -SLALICL 103 AAF21308/148-24 91.1% 12.6% MVVSLRCI 104 AAF31436 88.1% 15.5% SLVSLHCL 105 ENTK_BOVI/694-7 90.1% 23.8% SLILLQCN 106 Q9Z319 94.1% 16.7% SEISLLCS 107 Q9Y5Q5 95.0% 16.7% SKISLLCT 108 7304194 95.0% 15.2% PMADLTCS 109 HEPS_RAT 90.1% 13.0% RFLTATCQ consensus/100% ....h.C. consensus/90% ..s.l.C. consensus/80% .ssulhC. consensus/70% pcsuVhCt