cov pid 1 [ . . . . : . . . 80 1 Q39489/1-181 100.0% 100.0% PILDVDGDELRR--GHRYYAISERR----PVSGLTLAARSNA----PCPLNV-AQTSSN----DYGRPLAFFPE---NAE 2 O48625/1-176 91.7% 24.2% EVVDIDGKILRT--GVDYYILPVVRGR--GGG-LTMDSIGDK----MCPLDAVVQEHNE---IDQGLPLTFTPV---DPK 3 MIRA_RICDU/1-18 93.4% 32.1% PVLDIDGEKLRT--GTNYYIVPVLRDH--GGG-LTVSATTPNG-TFVCPPRV-VQTRKE---VDHDRPLAFFPE---NPK 4 ASP_THECC/1-181 93.4% 30.1% PVLDTDGDELQT--GVQYYVLSSISGA--GGGGLALGRATGQ----SCPEIV-VQRRSD---LDNGTPVIFSNA---DSK 5 Q40083/1-177 90.1% 16.9% PVLDINGDEVRA--GGNYYMVSAIWGA--GGGGLRLAHLDTMS--KCASDVI-VS-PND---LDNGDPITITPA-TADPE 6 S65830/1-176 92.3% 17.9% QVLDINGNPIFP--GGQYYILPAIRGP--PGGGVRLGRTGDL----TCPVTV-LQDRQE---VKYGLPVKFVIP---EIS 7 JX0310/1-176 92.3% 17.9% VVMDASSKPIFP--GGEYYIMPAIWGP--PGGGVRLAKTRNS----DCPVTV-LQDYGE---VIFGQPVKFTLP---GRG 8 Q40023/1-175 91.2% 24.1% PVHDTDGHELRA--DANYYVLSANRA---HGGGLTMAPGHGR----HCPLFV-SQDPNG---QHDGFPVRITPY-GVAPS 9 IAAS_ORYSA/1-17 89.0% 24.2% PVYDTEGHELSA--DGSYYVLPASPG---HGGGLTMAPRRVI----PCPLLV-AQETDE---RRKGFPVRFTPW-GGAAS 10 BAA82254/1-174 92.3% 21.3% IVFDTEGNPIRN--GGTYYVLPVIRG---KGGGIEFAKTETE----TCPLTV-VQSPFE---VSKGLPLIISS---PFKI 11 Q39899/1-176 92.8% 19.6% FVLDNEGNPLDS--GGTYYILSDIT----AFGGIRAAPTGNE----RCPLTV-VQSRNE---LDKGIGTIISS---PFRI 12 KTI2_SOYBN/1-17 91.7% 20.6% FVLDTDDDPLQN--GGTYYMLPVMRG---KSGGIEGNSTGKE----ICPLTV-VQSPNK---HNKGIGLVFKS---PLHA 13 IT1B_PSOTE/1-16 90.6% 22.0% PLLDSEGELVRN--GGTYYLLPDRWA---LGGGIEAAATGTE----TCPLTV-VRSPNE---VSVGEPLRISS---QLRS 14 CAA02911/1-170 91.2% 18.3% VLLDGNGEVVQN--GGTYYLLPQVWA---QGGGVQLAKTGEE----TCPLTV-VQSPNE---LSDGKPIRIES---RLRS 15 JC5562/1-175 93.9% 19.9% QLVDVEGEDVVN--GGTYYMLPGIEG---DGGGMEGAKTGRE----TCPITV-VQSRND---VSNGEPITIES---PFRS 16 A61433/1-177 95.0% 22.0% ALLDVEGKAVRN--GGTYYLVPQLRP---HGGGIEVAKIGKE----DCPLTV-VKSLDE---NSNGEPIMIAS---PLRS 17 Q43721/1-174 92.8% 20.3% DLVDVEGNLVEN--GGTYYLLPQITA---HGGGIETAKTGNE----PCPLTV-VQSPYE---VSNGEPIRISS---LFLS 18 ALB1_PSOTE/1-17 88.4% 16.8% PVYDAEGNKLVN--RGKYTIVSFSD-----GAGIDVVATGNE--NPEDPLSI-VKSTRN---IMYATSISSED-KTPPQP 19 Q43325/1-166 87.8% 17.6% PVYDTNGNQLRN--NGEYYIVPVSG-----GAGIDVVATGTE----KCPLTI-VQSSSS---TKYSTVFKSEA-TLPRPI 20 Q43395/1-173 88.4% 19.6% QVKDSNGNPVKR--GAKYFIQPAKS----NAGGLVPAAINLL---PFCPLGI-TQTLLP---YQPGLPVSFGY-EPVIVG 21 Q42436/1-178 89.5% 17.8% RVDDTDGNPLRT--TAQYLILPLSPRS--NGGGLLPVPVKLQ---PLCPLGI-SQSSVK---ALTGLPVSFSY-PYAIMD 22 Q41480/1-183 93.4% 24.2% PVLDTDGKKLNP--NSSYRIISTFWGA--LGGDVYLGKSPNSDA--PCPDGV-FRYNSD--VGPSGTPVRFIP-----LS 23 Q41505/1-172 87.3% 16.4% AVHAEDPAAVLDFYGNEVTAGASYFIDH-EDSLAVSAATRI-----ICNSDV-TLSPM-----SDKLPITFSP--VVEST 24 Q06420/1-173 88.4% 17.0% GVQAEDPTAVLDFYGREVQAGASYLIDH-EDIRVVTATINP-----ICNSDV-LLSTGN-----EGLPVKFSP--VINST 25 ITRY_ACACO/1-17 89.5% 24.6% ELLDADGDILRN--GGAYYILPALRG---KGGGLTLAKTGDE----SCPLTV-VQAQSE---TKRGLPAVIWT----PPK 26 O04797/1-171 87.8% 20.5% PVKDTNGNPLKI--ETRYFIQPASDN---NGGGLVPANVDLS---HLCPLGI-VRTSLP---YQPGLPVTISTPS-SSEG 27 LSPI_CARPA/1-17 91.7% 24.7% PIVDIDGKPVLY--GVDYFVVSAIWG-A-GGGGLTVYGPGNKK---KCPLSV-VQDPFD-----NGEPIIFSAIK--NVK 28 Q39369/1-180 90.6% 22.8% PVLDTDGDIIFD---GSYYVLPLIWGP--TGGGLTLVSRRGN----QCPLFI-GQERSE---VNRGIPVKFSN--WRSRV 29 Q40129/1-183 91.7% 20.7% SVVDSDGNPVKA--GAKYFVLPSLRG---SGGGLVLSRVVDKN-VKVCPQDI-VQEPQE---LNTGRPVEFFP-AYPNKT 30 Q39091/1-167 87.8% 20.1% HVEDSVGRLLRP--GQTYHIVPANP--E-TGGGIFSNSEE------ICPLDI-FQSNNP---LDLGLPIKFKS------E 31 JC5447/1-176 89.0% 20.4% PVVDSDGDAVQLNLGGNYPLYTIQSAAIGFRGGLSTLHKD------ACKSYV-YEAPET----DRGLPVGFSA---SATS consensus/100% .l.s..st.l......th.h.s...........h.............s...h.............t.sh........... consensus/90% .lhD.pup.l....sspYhhhs........sutl..s.ht.......Cs..l.hpt.........u.sl.h......... consensus/80% .lhD.pGp.l.s..sspYalls........uGGl.hstht.......CP.sl.spp..p....p.G.Plhhts......t consensus/70% .VhDs-Gp.lps..GupYallsshhs...tGGGlphuttstp.....CPlsl.sQs.pp...hppGhPlthps......p cov pid 81 . 1 . . . . : . 160 1 Q39489/1-181 100.0% 100.0% DDTVQEGNTLNIMFPEP---TECRAST------VWTLDRER---GVVTTGGTSSS----AIGPHN---SRFSIRRAGDAS 2 O48625/1-176 91.7% 24.2% KGVIRESTDLNIIFSAN---SICVQTT------QWKLDDFD--ETTGQYFITLGGDQ-GNPGVETI-SNWFKIEKYDR-- 3 MIRA_RICDU/1-18 93.4% 32.1% EDVVRVSTDLNINFSAF---MPCRWTS----STVWRLDKYD--ESTGQYFVTIGGVK-GNPGPETI-SSWFKIEEFC--- 4 ASP_THECC/1-181 93.4% 30.1% DDVVRVSTDVNIEFVPIR-DRLCSTST------VWRLDNYD--NSAGKWWVTTDGVK-GEPGPNTL-CSWFKIEKAGV-- 5 Q40083/1-177 90.1% 16.9% STVVMASTYQTFRFNIAN-NKLCVKN------VNWGIQHDS---ASGQYFLKDGE------FVSDN-SNQFKIEVVD--- 6 S65830/1-176 92.3% 17.9% PGIIFTGTPIEIEYAKK---PNCAKSS------KWLVFVDN---LIEKAYVGIGGPEN-YPGVQTL-SGLFKIEKHE--- 7 JX0310/1-176 92.3% 17.9% SGLIITNTPVE-EFIKK---PECASSS------KWSVFVDD---EIEKACVGIGGHED-HPGEQVF-SGTFTIQKSR--- 8 Q40023/1-175 91.2% 24.1% DKIIRLSTDVRISFRAY---TTCLQST------EWHIDSEL---AAGRRHVITGPVKDPSPSGRE---NAFRIEKYSG-- 9 IAAS_ORYSA/1-17 89.0% 24.2% PRTLRVSTDVRIRFNAA---TLCVQST------EWHVGDEP---LTGARRVVTGPLIGPSPSGRE---NAFRVEKYGG-- 10 BAA82254/1-174 92.3% 21.3% LDITEGLI-LSLSFTYV---PPCASTP-----SRWTVILKG---LPEELHVKLTG----YKNTID---GWFRIQRAS--- 11 Q39899/1-176 92.8% 19.6% RFIAEGNP-LRLKFDSF---AVIMLCV--GIPTEWSVVED----LPEGPAVKIGE----NKDAVD---GWFRIERVSD-- 12 KTI2_SOYBN/1-17 91.7% 20.6% LFIAERYP-LSIKFDSF---AVIPLCG--VMPTKWAIVER-----EGLQAVTLA-----ARDTVD---GWFNIERVSR-- 13 IT1B_PSOTE/1-16 90.6% 22.0% GFIPDYSL-VRIGFANP---PKCAPSP------WWTVVED----QPQQPSVKLSE---LKSTKFD---YLFKFEKVT--- 14 CAA02911/1-170 91.2% 18.3% AFIPDDDK-VRIGFAYA---PKCAPSP------WWTVVED----EQEGLSVKLSE---DESTQFD---YPFKFEQVS--- 15 JC5562/1-175 93.9% 19.9% YFIPKGSL-VRIGFTSP---PKCAPSP------WWTLALDR---PQGLLSVKLGE---YESTEFN---YSFKFEDVS--- 16 A61433/1-177 95.0% 22.0% AFIPEYSL-LKIGFSDP---PKCAPSP------WWTVVKDQ---SERRPTIKLSE---YKRSELD---YPFQFERVYTA- 17 Q43721/1-174 92.8% 20.3% LFIPRGSL-VALGFVNP---PSCAASP------WWTVVDS-----PQGPAVKLSQ---QKLPEKDI--LVFKFEKVSH-- 18 ALB1_PSOTE/1-17 88.4% 16.8% RNILENMR-LKINFATD---PHKG--------DVWSVVDF----QPDGQQLKLAGR---YPNQVK---GAFTIQKGS--- 19 Q43325/1-166 87.8% 17.6% NYITQNMA-FSIKFGCN---QYRG--------RPWTVVRG----LPEGLALKLNG----YTNTAR----VLRIKPYS--- 20 Q43395/1-173 88.4% 19.6% TDYIYTSTTINIEFESDI-WPVCNELS-----KLWAVDVSS--SAAKEPAIIIGG----ESTAPN---SLFKIEEAT--- 21 Q42436/1-178 89.5% 17.8% TYVNEMEA-INIEFKSDA-WPGCEEFS-----KYWEVDESS--SASEEPAVLVGG----KSTERN---SWFRIERKEPF- 22 Q41480/1-183 93.4% 24.2% TNIFEDQL-LNIQFNIPT-VKLCVSYT------IWKVGNL--NTHLWTMLLETGG----TIGKADS--SYFKIVKSSKF- 23 Q41505/1-172 87.3% 16.4% DSVIREGAYLNVNFNAI----LCR---MAGVTTMWKIELRA---TMRGFVVTTGG-----VDRLN----LFKITKLEG-- 24 Q06420/1-173 88.4% 17.0% DGVIREGTLITVSFDAS----TCTG--MAGVTPMWKIGFNS---TAKGYIVTTGG-----VDRLN----RFKITKFE--- 25 ITRY_ACACO/1-17 89.5% 24.6% IAILTPGFYLNFEFQPRD-LPACLQKY---STLPWKVEGE-------SQEVKIAP---KEKEQFLV--GSFKIKPYR--- 26 O04797/1-171 87.8% 20.5% NDVLTNTN-IAITFDAP--IWLCPSS------KTWTVDSS-----SEEKYIITGG----DPKSGE---SFFRIEKYG--- 27 LSPI_CARPA/1-17 91.7% 24.7% DNIVFESVDLNVKFNIT---INCN------ETTAWKVDRFP---GVIGWTVTLGGEKG-YHGFEST-HSMFKIKKAG--- 28 Q39369/1-180 90.6% 22.8% GFVPEEEN-LNIKMDVEP--TICAQSA-----YWWVTPAPS---PWRSLFIAAGPKP--EAGGEDSSRSFFQIKKTE--- 29 Q40129/1-183 91.7% 20.7% GEIIKVNNPINVNFFSLSKTSRCANFT------VWKMDKK------YKYVVGRGTLG--ALNRIR---NWFRIVPYG--- 30 Q39091/1-167 87.8% 20.1% LWFVKEMNSITIEFEAPN-WFLCPKES-----KGWRVVYS--EEFKKSLIISTGG------SSNP---SGFQIHRVDG-- 31 JC5447/1-176 89.0% 20.4% QPVMQLGSRYKFSFSMPV-PLICD--------TAWSIGKSETNGGISFQPITAG---DYFYLNNF---SWFEARSTE--- consensus/100% ..h.......t..h........h...........W.h.............h..s................hph....... consensus/90% ..h......lphtF........p...........Wtl..........t..lhhu.......t........Fphp.ht... consensus/80% ..l.p.t..lpltFt.......C...........Wpls........tt.hlthut......s..p....hFplpcht... consensus/70% t.lhp.ss.lplpFss.....hCs..s......hWplstp......tt.hlphus......st.s...shF+Ic+hs... cov pid 161 . . . 2 . . ] 229 1 Q39489/1-181 100.0% 100.0% SERERKYQIEVCPCSNGV---PRPSCRMACVGSLGLTED---EGNLLLNIN-----NERPHAIRFVKVK 2 O48625/1-176 91.7% 24.2% -----DYKLLYCPTVCDF-------CKVIC-RDIGIFIQ---DGVRRLALS------DVPFKVMFKKA- 3 MIRA_RICDU/1-18 93.4% 32.1% --GSGFYKLVFCPTVCG-------SCKVKC-GDVGIYID--QKGRRRLALS------DKPFAFEFNKTV 4 ASP_THECC/1-181 93.4% 30.1% ----LGYKFRFCPSVCD-------SCTTLC-SDIGRHSD--DDGQIRLALS------DNEWAWMFKKAS 5 Q40083/1-177 90.1% 16.9% -ANLNFYKLTYCQ-----------FGSDKC-YNCGRFHDP-MLRTTRLALS------NSPFVFVIKPTD 6 S65830/1-176 92.3% 17.9% --SGFGYKLGFCIKGS-----------PTC-LGVGRFDN--DENGRRLNLT-----EHESFQVVFIQAE 7 JX0310/1-176 92.3% 17.9% -TPYNSYKLVFCE-----------SDSSTC-SDIGRYDN--NEGGRRLILT-----HHNPFQVVFMDAS 8 Q40023/1-175 91.2% 24.1% -AEVHEYKLMSCG--------------DWC-QDLGVFRD--LKGGAWFLGAT-----EPYHVVVFKKAP 9 IAAS_ORYSA/1-17 89.0% 24.2% -----GYKLVSCR--------------DSC-QDLGVSRD--GAGAAWIGAS------QPPHVVVFKKAR 10 BAA82254/1-174 92.3% 21.3% -SESNYYKLVFCTSN----------DDSSC-GDIVAPID--REGNRPLIVTHD---QNHPLLVQFQKVE 11 Q39899/1-176 92.8% 19.6% -DEFNNYKLVFCTQQA---------EDDKC-GDIGISIDH-DDGTRRLVVS-----KNKPLVVQFQKVD 12 KTI2_SOYBN/1-17 91.7% 20.6% -EYNDYYKLVFCPQEA---------EDNKC-EDIGIQID--NDGIRRLVLS-----KNKPLVVEFQKFR 13 IT1B_PSOTE/1-16 90.6% 22.0% -SKFSSYKLKYCA------------KRDTC-KDIGIYRD--QKGYARLVVT-----DENPLVVIFKKVE 14 CAA02911/1-170 91.2% 18.3% -DQLHSYKLLYCE-----------GKHEKC-ASIGINRD--QKGYRRLVVT-----EDYPLTVVLKKDE 15 JC5562/1-175 93.9% 19.9% -SKLHSYKLSYCVREE-------WYEDYIC-KNIGIYRD--SKGYRRLVVN-----EENPLVVVLKKVE 16 A61433/1-177 95.0% 22.0% -SKMYAYKLLYCGSED-------EEEEIIC-KDIGIFRD--QEGYQRLIVS-----RKNPLVVGFKKVE 17 Q43721/1-174 92.8% 20.3% -SNIHVYKLLYCQRDE---------EDVKCDQYIGIHRD--RNGNRRLVVT-----KKNPLELVLVKAK 18 ALB1_PSOTE/1-17 88.4% 16.8% -NTPRTYKLLFCPVGS------------PC-KNIGISTD--PEGKKRLVVSY----QSDPLVVKFHRHE 19 Q43325/1-166 87.8% 17.6% -PGSRNYKLLFCP------------DGSQC-ANVGFTLM--LSERKRLVVSN----TLPTLQVQFQKYG 20 Q43395/1-173 88.4% 19.6% --EANTYKLTTSY------------------GTVGTIPGP-WLSAPQLIVTND---ESKTLFVKFVKVD 21 Q42436/1-178 89.5% 17.8% -YGGVAYKLTTLT------------------GTIGTVPGP-LGQAPQLVLTND--DCETSLIHRFMIVH 22 Q41480/1-183 93.4% 24.2% -----GYNLLYCPITRPPIVCPFCRDDDFC-AKVGVVIQ---NGKRRLALV-----NENPLDVLFQEV- 23 Q41505/1-172 87.3% 16.4% --DNSLYQLSYCP---------VSDPFCEC-SCVPVG-----NSCNRLVP-----NARTPLLVVFEPDT 24 Q06420/1-173 88.4% 17.0% -SDSSFYQLSYCPNSE---------PFCEC-PCVPVGA----NSDNYLAP------NVSYADFRFKPDT 25 ITRY_ACACO/1-17 89.5% 24.6% ----DDYKLVYCEGNS---------DDESC-KDLGISIDD--ENNRRLVVK-----DGHPLAVRFEKAH 26 O04797/1-171 87.8% 20.5% -NGKNTYKLVRYDNG-------------EG-KSVGSTKS---LWGPALVLNDDDDSDENAFPIKFR--- 27 LSPI_CARPA/1-17 91.7% 24.7% --LPFSYKFHFCPSYPR-------TRLIPC-NNVDIFFDK--YRIRRLILT------NDAKEFVFIKTN 28 Q39369/1-180 90.6% 22.8% -AKLNAYKFVFCS------------EGNDC-IDVGKNEE---GGVRGLVLGST-PPFATPFEVVFVKAT 29 Q40129/1-183 91.7% 20.7% ----KGYRFVYCPSLCVP------CKIRCF-DLFISYEERENVQVRRLAAS----DNELPFSVYFKKAD 30 Q39091/1-167 87.8% 20.1% ----GAYKIVYCTNIS----------TTTC-MNVGIFTDI--SGARRLALT-----SDEALLVKFQKAA 31 JC5447/1-176 89.0% 20.4% --ETGVYKLAACSCE---------FCKIAC-PEVGSFNV---NGRTLLGIG------GEHFTVRFQKFD consensus/100% ......Yph........................h.............h............h.h.h.... consensus/90% ......Yph.hC.................s..plsh.......t..hLhhs......t..h.h.h.... consensus/80% ......YKLhhC.................C.tslGh..p...tshttLsls......ppsh.lhF.cst consensus/70% ....tsYKLhaCs................C.tslGhh.s...putppLsls.....tppsh.VhFpKsp