cov pid 1 [ . . . . : . . . 80 1 Q22871/1-0 100.0% 100.0% EIVYKIISSDGVVSKMSEKAVQQSKTLSNLIENLGYTIENIETR-----------DPIPVTNVNGKTMAKVAEWCEKHKA 2 AAC68782/1-0 95.5% 51.3% VVYYSIESNDRVVLKISEQAIKQSATLSNSITNLGYSAENAE-----------SMVPIPIEKVNGKTLKLVVEWCEHHKA 3 C52D10/1-0 98.2% 49.1% PIMYKVESNDGKVFEISDEAVKQSNILSNLISTCAPEDVASM-------------DPIPITNVTGNILKMVIEWCEKHKG 4 O45357/1-0 97.3% 35.3% PIMYKLVSEDKQEFTISAKAAKKSIVLNDVISRRAPEDSAPM-------------APIPVEKVTGDILNMVIKWCEQRKE 5 5701566/1-0 94.6% 31.1% PRLLQLASSNGEVLQADIRALQLSSTISTTIKELGYDKE-----------DCAEIKPIPVDEHE-YTLDLLIKWCDQHKG 6 Q17696/1-0 95.5% 35.3% PRLLQLTSSDGHLLQGDIRALLLSSTLAATIRELGYDKE-----------YCAELKPVPVNNVVGFTLKLLIEWCDKHKE 7 O48570/1-0 93.8% 29.3% SKKITLRSSDGEVFEVDEAIALLSQTIKHMIEDDCADNV------------------IPLPNVTGKILSKVIEYCKRHVD 8 AAD31370/1-0 93.8% 29.3% KKMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNG------------------IPLPNVTGAILAKVIEYCKKHVE 9 CAB75820/1-0 88.4% 27.6% SKMVMLLSSDGESFQVEEAVAVQSQTIAHMIEDDCVANG------------------VPIANVTGVILSKVIEYCKKHVV 10 O49484/1-0 88.4% 30.1% SKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADG------------------IPLANVESKILVKVIEYCKKHHV 11 AAD24382/1-0 86.6% 23.0% SKKIVLTSSDDECFEIDEAVARKMQMVAHMIDDDCADKA------------------IRLQNVTGKILAIIIEYCKKHVD 12 O81057/1-0 85.7% 27.4% SNKIVLSSSDGESFEVEEAVARKLKIVEHMIEDDCVVTE------------------VPLQNVTGKILSIVVEYCKKHVV 13 O81058/1-0 93.8% 24.8% SKKIVLTSSDGESFKVEEVVARKLQIVGHIIEDDCATNK------------------IPIPNVTGEILAKVIEYCKKHVE 14 AAD32873/1-0 91.1% 23.5% SNKILLTSSDGESFEIDEAVARKFLIIVHMMEDNCAGEA------------------IPLENVTGDILSKIIEYAKMHVN 15 CAB75821/1-0 85.7% 28.3% STKIMLKSSDGKSFEIDEDVARKSIAINHMVEDGCATDV------------------IPLRNVTSKILKIVIDYCEKHVK 16 O45517/1-0 94.6% 35.0% QKQIKLTSSDDKTFTVSRKVISQSKTITDIIQNLGIEES-----------GSTSEDTIPLQKVTSTILEKIITWCEHHAD 17 Q9XU27/1-0 92.9% 36.3% EQDVKIVTSDDVEFIVSPKIANQSKLLADFVVLNQRE-------------------PIPLKNVTSEIFKKVIEWCEYHAE 18 I39170/1-0 95.5% 38.5% MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEG-------------DDDPVPLPNVNAAILKKVIQWCTHHKD 19 Q94505/1-0 93.8% 31.3% MSLVKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDA-----------------PIPLPNVTSTILEKVLDYCRHHHQ 20 Q93731/1-0 94.6% 36.4% NREIKISSSDDEIFLVPRNVIRLSNTLNTLLVDLGLDDD-----------EGTNAEPIPVQNVTASILKKVINWCTKHQS 21 Q9Y709/1-0 94.6% 34.5% MSKIKLISSDNEEFVVDQLIAERSMLIKNMLEDVGEINV-----------------PIPLPNVSSNVLRKVLEWCEHHKN 22 5706736/1-0 94.6% 36.0% EKMLVMTSNDGKNIEVPRDVAERSLLIKNMLEDLGDPTE-----------------PIPIPNVSENVLSKVLEWCAHHRN 23 AAD56717/1-0 100.0% 26.6% GKYVVLVSGEGEKFTVEKKIAQRSLLLKNYLNDMHESSLDDEDEEQDEDEDEDDEIVMPVPNVRSSVLQKVIEWAEHHRD 24 Q15369/1-0 86.6% 19.6% AMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENET-------------NEVNFREIPSHVLSKVCMYFTYKVR 25 Q19920/1-0 85.7% 15.2% SKYVKLVSNDDHEFIIKREVAMTSKSLRELFANPTVDLAAAN-------------NTVYFSDFQSHILQKVCHYLAYKTK 26 CAB52743/1-0 84.8% 14.3% KEYVRLISGDGFVFILEKEIACLSGTIRAILNEGIFSEAQK--------------NECTFPDIRATLLEKVCEYLHYNYR 27 Q89374/1-0 84.8% 23.4% -MSIVFITSDFHRIEADKNVLDQSTVINDIVEDVGDD------------------EPIPLPTITAKVLTKILEYCSFYNV 28 O13292/1-0 86.6% 17.9% QDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGR----------------IELKQFDSHILEKAVEYLNYYLK 29 Q21968/1-0 94.6% 28.8% VILYKLRSTDGQRFLADRRTIGMIGRIEDLFRNAGLDLIPADQLQ-----------PIQLE-IPATVMRKVIEWCDHHKH 30 Q18567/1-0 88.4% 29.3% -SIFILISSDGEKFQTDGHCIRHSKVLMQASKSLETPD-----------------TPIQVEKVQGDTLNRVLEWCNNHRD 31 Q21969/1-0 96.4% 22.8% APLYKLKSEDGQIFNVERGPMKFCAFINQKFIDHGVNDRNCE-----------RADPILVP-FHSSIVQAVIEWLYHYQD 32 Q21367/1-0 90.2% 22.3% KPVFKIQSCDGQVFAVEDWFIQKSKCFSVVLAQMNNLVQPH---------------PLKTS-ICSFVLVKIIEWCYHHRN 33 O80824/1-0 91.1% 12.5% KSYIWLQTADGSIQQVEQEVAMFCPMICQEVIQKGVGSSKNHA------------ISLPQR-VNPAMFSLILDYCRFHQL 34 CAB63347 87.5% 27.4% QLGARSQNFNLRWNRVSPRVANESKVLTDFLQTYQPE-----------------MDAIPLTKVDAKIFEKIIEYCEHQGT 35 O75863 84.8% 15.9% AMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQ----------VNFREIPPRCYPKHAKACIYFTYKVH 36 Q9XWL7 85.7% 23.5% CHQKSSIDSKLSTITISKCPPNQSEILSQMASQVQQGKA--------------SNYVIPVPNVKGITMKMVVTWCIRHRV consensus/100% ...h...s.p.....h..........h..............................h....h...hh.hhh.ah..... consensus/90% ...h.h.ot-t..h.hp.thh....hltthh.t.t......................l.h..hps.hhthlhpahthp.. consensus/80% ..hhhl.SsDsp.h.lppthh..S.hltphlpp.s.tt...................l.l.plputhlphllcasph+ht consensus/70% ..hhhLhSuDsp.FplpctssptSthlpphlps.s.spt..................lPl.pVsuplLptll-aCppHhp cov pid 81 . 1 . . . . : ] 157 1 Q22871/1-0 100.0% 100.0% DAIPEDNMN--------------------------------VLKTLTIPEWDQKFLK--IEDEALFDLILASNFLDI 2 AAC68782/1-0 95.5% 51.3% DPVPEAYPSG----------------------------------NTVLPVWDRKFVD--IEHDALTDLVNASNFLEV 3 C52D10/1-0 98.2% 49.1% EALPVEDDS--------------------------------VPKNINVPEWDTNFLK--IDNEVLFDLIVACNYLDV 4 O45357/1-0 97.3% 35.3% DELPVDDG-----------------------------SIPKKIDKIDVPQWDADFLK--ISSDVLFDLIVACNELDV 5 5701566/1-0 94.6% 31.1% DDPEIAKAEK-------------------------------GKKKVVIPSWDQHFFSV-LPMGNLLAVIKAAYDLDI 6 Q17696/1-0 95.5% 35.3% DDPAIALAEK-------------------------------DKKNICIPSWDRHFLSR-LPMSNLFDLITAAYHLDV 7 O48570/1-0 93.8% 29.3% ADAAKSEEKVAA----------------------------AAAGDDDLKAFDADFVK--VDQATLFDLILAANYLNI 8 AAD31370/1-0 93.8% 29.3% AAAEAGGDKD----------------------------FYGSTENHELKTWDNDFVK--VDHPTLFDLLRAANYLNI 9 CAB75820/1-0 88.4% 27.6% SDS------------------------------------PTEESKDELKKWDAEFMKALEQSSTLFDVMLAANYLNI 10 O49484/1-0 88.4% 30.1% DEA-------------------------------------NPISEEDLNNWDEKFMD--LEQSTIFELILAANYLNI 11 AAD24382/1-0 86.6% 23.0% DVEA----------------------------------------KNEFVTWDAEFVKN-IDMDTLFKLLDAADYLIV 12 O81057/1-0 85.7% 27.4% DEE-----------------------------------------SDEFKTWDEEFMKK-FDQPTVFQLLLAANYLNI 13 O81058/1-0 93.8% 24.8% DDDDVVETHESSTKGDKTVEEAKKKPDDVAVPESTEGDDEAEDKKEKLNEWDAKFMKD-FDIKTIFDIILAANYLNV 14 AAD32873/1-0 91.1% 23.5% EPSEEDEDEEA---------------------------------KKNLDSWDAKFMEK-LDLETIFKIILAANYLNF 15 CAB75821/1-0 85.7% 28.3% SKE-----------------------------------------EEDLKEWDADFMKT-IETTILFDVMMAANYLNI 16 O45517/1-0 94.6% 35.0% DEPKKVDE---------------------------------NKKTVDISEWDAEFMK--VDQGTLFEIILAANYLDI 17 Q9XU27/1-0 92.9% 36.3% DIPKPPDNV-------------------------------EEKRTDDIGEWDVEFLK--VDKGTLFELVLAATYLDI 18 I39170/1-0 95.5% 38.5% DPPPPEDD------------------------------ENKEKRTDDIPVWDQEFLK--VDQGTLFELILAANYLDI 19 Q94505/1-0 93.8% 31.3% HPSPQGDD------------------------------KKDEKRLDDIPPYDRDFCK--VDQPTLFELILAANYLDI 20 Q93731/1-0 94.6% 36.4% DPIPTEDS--------------------------------EKKTDGSIQDWDKKFLD--IDQGTLFELILAANYLDI 21 Q9Y709/1-0 94.6% 34.5% DLYSGTEEES----------------------------DIRLKKSTDIDEWDRKFMA--VDQEMLFEIVLASNYLDI 22 5706736/1-0 94.6% 36.0% DPPSSADDD------------------------------DSRRKTTDIEEWDQKFMQ--VDQEMLFEIILAANYLDI 23 AAD56717/1-0 100.0% 26.6% SNFPDEDDD-------------------------------DSRKSAPVDAWDREFLK--VDQEMLYEIILAANYLNI 24 Q15369/1-0 86.6% 19.6% YTNS--------------------------------------------STEIPEFP---IAPEIALELLMAANFLDC 25 Q19920/1-0 85.7% 15.2% YRH---------------------------------------------SRVAPPFD---IPPDIAMDLLAAANELEC 26 CAB52743/1-0 84.8% 14.3% YKN---------------------------------------------QLDIPKFD---IPPEMVLELLVTAEYLEA 27 Q89374/1-0 84.8% 23.4% SHTE-----------------------------------------REIKDFDKGFVN--INMDFMFDLIQGANFLNI 28 O13292/1-0 86.6% 17.9% YSGVSEDD-----------------------------------------DEIPEFE---IPTEMSLELLLAADYLSI 29 Q21968/1-0 94.6% 28.8% DPPYDES----------------------------------EPETNDIPDWDASFLM--VRHNMLFDIIRAARDF-- 30 Q18567/1-0 88.4% 29.3% DGKYVSQCGPSLR----------------------------------LPQWDFRWLKD-LDNQELVDLINASNDLQM 31 Q21969/1-0 96.4% 22.8% NPLARRDS---------------------------------KIRYHDFSEWDKQFFN--VESGVLFALLNASHALGV 32 Q21367/1-0 90.2% 22.3% EDQDH--------------------------------------AQRILTAWDVQFIR--TNSAILLHLAEAAFRLEI 33 O80824/1-0 91.1% 12.5% PGRSNKERK----------------------------------------TYDERFIR--MDTKRLCELTSAADSLQL 34 CAB63347 87.5% 27.4% PRP---------------------------------------LLNGEIGEWDSEFLK--LDQNTLFDLVLAANYLNI 35 O75863 84.8% 15.9% YSNS--------------------------------------------STEIPEFL-------TALEVLMASDFLDI 36 Q9XWL7 85.7% 23.5% EVPST-------------------------------------------STWEVDYVK-SLDREELKDAIWAAKYLRM consensus/100% ......................................................a..........hthh.ss..h.. consensus/90% .....................................................pF....h....hhclh.Aup.Lph consensus/80% t..............................................h.paD.cFhp..lp.thlh-llhAushLpl consensus/70% s..............................................l.pWDtcFhp..lspthLh-llhAAsaLsl