cov pid 1 [ . . . . : . . . 80 1 Q9NTV0/43-214 100.0% 100.0% PDLQALFVQFN-DQFFWGQLEAV--EVKWSVRMTLC---AGICSYEGKGG--------MCSIRLSEPLLKLRPRKDLVET 2 Q22557/18-192 100.0% 63.6% PDIHALFIQFD-ARFFGGSLACC--EVKWSPRMYAC---AGICSYEIRGGRGG-----LCSIRLSKPLLTLRPRSDLVET 3 Q9VXU6/122-295 100.0% 57.0% PDIYAMFIRFD-EKFFQERLGAV--SLEWSKKMYSC---AGICYQRGNRFVK------QVTIRLSEPLLKLRPRKDLVET 4 SPRT_HAEIN/3-15 88.2% 15.9% RKLNQSLLLAE--AYFKRKFTMP--EVNYELRGIKA---GVAYLQ-------------KNEIKFNRTLLQENTDEFIRQV 5 CAC89775/16-167 88.2% 16.5% QCLRHYLQLAN--QHLGTAYPEP--KVNYHQRGTNA---GSAYLQ-------------SFEIRLNPVLLLENKQPFIDEV 6 Q9CM18/16-165 88.2% 18.8% RKLTQCLQLAS--GYFNRTFSMP--TVHYNVRGMKA---GVAYLQ-------------QNEIRLNPILLLENSAAFIQQV 7 Q9W554/821-975 85.3% 19.1% DQLAQHLYKMYNAQVFNNELDV---PITWSKLLRNT---AGRCMNKR------KLNQRSSVVELSVKVLTTA--DRLRCT 8 Q23462/296-453 85.9% 17.2% ESLLTRLQDIL-VRRIFSAIPSEKLKVIWNARLRKS---AGQCRN---------HSNGNSTVEMSPVVCTTA--ERVRDT 9 CAC60255/519-67 87.6% 15.0% DELVQRIYDLFNRSVCDKKLPE-KLRIGWNNKMVKT---AGLCSTGEMWYPKW---RRFAKIQIGLKVCDSA--DRIRDT 10 Q99SJ0/4-149 83.5% 11.0% DKLQRMVENLS-EEKFGRTFRH---CAYFNKRLRTT---GGRYLL------------KSHDIEINPKQYEHYGEDAVVKI 11 Q9A0W7/1-144 82.4% 12.8% MTLTNYVQEVS-LADFGKPLHH---KAYWNKRLKTT---GGRFFP------------KDGHLDFNPRMLEEHGELIFRKI 12 Q97RB5/1-146 83.5% 13.4% MKLTDYVKQVS-LEDFGRPFIH---HVQWNRRLRST---GGRFFP------------KDGHLDFNPKVYQELGLDVFRKI 13 Q9JWQ2/4-151 83.5% 16.1% QELQQLVEDIS-LKSFGMKFRH---KARFNPRLRTT---GGRYLL------------HSHDIELNPKHLELFGLDELIGI 14 P96628/4-150 83.5% 15.0% KELQKLTEDIS-ETYFKKPFRH---QALFNDRLKTT---GGRYLL------------TSHNIELNRKYLIEHGREELIGI 15 CAC96130/4-147 82.4% 13.4% TELQQHMEEVS-LQFFQKEFRH---QAVFNTRLRTT---GGRYLL------------KSHNIEMNPKYLENFGLEYFFGI 16 Q9KUP4/12-161 88.2% 14.7% QKIKQCIATAS--EALQRPFKLP--KLNYRLRGRAA---GKAYLQ-------------LGEIRLNPVLFAENVDDFLQQV 17 O42953/135-301 89.4% 16.4% KCFLARLEDEVFQGRLTSSLEKKEIGIVWSKSFSTT---AGRANLKRNNKDAPLGKKTYAYIELSDKVIVTK--ERLYNT 18 Q9I4E9/7-161 90.0% 17.6% ARVEACYRQAE--HFFQRSFPRP--TVSFRLRGQKA---GVAHLD-------------ENLLRFNPQLYRENREHFLEQT 19 Q9CIS0/5-145 80.6% 14.5% QELTAKVKEIS-LTYFKQSFDH---EAKWNQRLRTT---GGRFFP------------KDLHLDFNPKMAELK---DFEGV 20 AAL21967/16-165 88.2% 15.9% RRLRENLAQAN--LKLDRHYPEP--KLVYTQRGTSA---GTAWLE-------------SYEIRLNPVLLLENIDTFIAEV 21 Q9ZX00/1-147 80.0% 19.0% --MTNHMTPAQ-ARRIATDLLREHGLTGWSVTFDNARRRAGQCSY------------RTRQISLSKPLMAQRSYDDTMMT 22 Q9W4W3/486-611 81.8% 13.6% VALAKVLFNMFNHAVFHCGLQV---PIVWKHAMKKR----WKCELGF-----DASGRRTAQILLLHSIDTAA---ELIYL 23 ORF_Mcn 86.5% 15.5% GDLAYDLFDDINKSVFDDKLRD--VEIVWSNRLRRV---AGRWEKKK---------NDTPCKIVLSSVLLTD-QSRLVDT consensus/100% ..h...h........h...h......h.ap..h.........h..................h.h............h..h consensus/90% .pl.t.h..h...t.htt.h......h.ap.ph.ts...ushh..................lphs..hh.......h.th consensus/80% .pltthh.ph...thhtpth.....ph.ap.+hhps...usth.................plchs..hh..t..t.h.th consensus/70% .pLtthh.php..phhtpth.t...phhas.Rhpps...uuth...............ptplchs..lhtpt..p.lhph cov pid 81 . 1 . . . . : . 160 1 Q9NTV0/43-214 100.0% 100.0% LLHEMIHAYLFVTNNDKDR-EGHG-PEFCKHMHRINSLTGA--NITVYHTFHDEVDEY--RRHWWRCN-GPCQHRPPYYG 2 Q22557/18-192 100.0% 63.6% LLHEMIHAYLFVKERNRDR-DGHG-PQFQAHMHRINQAGGT--NITIYHSFHDEVRLY--KQHWWRCS-GPCRDRRPFFG 3 Q9VXU6/122-295 100.0% 57.0% LLHEMIHAYCFVLNIREGN-GGHG-PNFKRIMETINKVAGT--NITVYHTFHDEVASY--RTHIWRCT-GICRERSPFWG 4 SPRT_HAEIN/3-15 88.2% 15.9% VPHELAHLIVYQMF-GRVK--PHG-KEWQLVMNEIFKLPAD-----TCHQFDIKNVQG--KTFEYRCA---CQTHFL--- 5 CAC89775/16-167 88.2% 16.5% VPHELAHLLVYRQF-GRVA--PHG-KEWRWMMEQVLKVPAS-----RTHQFEVASVRS--KTFNYQCK---CQQHSL--- 6 Q9CM18/16-165 88.2% 18.8% VPHELAHLIVYQVF-GRVK--PHG-EEWQSVMQDVFHLTPE-----VCHQFDVSSVTK--QRYPYQCQ---CQTHYL--- 7 Q9W554/821-975 85.3% 19.1% LIHELCHAAAWVFN-GEG---GHG-RVWKMWAQRANDKFPDLPQIKVCHNYSIEF------KYTYKCL--SCDKASHAHS 8 Q23462/296-453 85.9% 17.2% LIHELCHAATWVV--DRLHKEGHG-PGWKRWGARCSSVFKSLPFIERCHSYEIEA------KFFYVCEKDGCDVEIK--- 9 CAC60255/519-67 87.6% 15.0% LIHEMCHAASWLI--DGIH-DSHG-DAWKYYARKSNRIHPELPRVTRCHNYKINY------KVHYECT--GCKTRIG--- 10 Q99SJ0/4-149 83.5% 11.0% ILHELCHYHLHIA--GKGY--QHKDQDFKRLSQQVGAP--------RFCNSIESYQQR--ANYEYYCT--KCHAKYI--- 11 Q9A0W7/1-144 82.4% 12.8% VRHELCHYHLYFE--GRGY--HHKDRDFKDLLAQVNGL--------RYVPTSSKSK----TNHHYSCQ--TCGQVYQ--- 12 Q97RB5/1-146 83.5% 13.4% VRHELCHYHLYFQ--GKGY--QHKDRDFKELLKAVDGL--------RFVPSLPNSNSK--PIKLYRCQ--SCQQRYQ--- 13 Q9JWQ2/4-151 83.5% 16.1% IKHELCHYHLHLQ--KKGY--HHRDADFKLLLKEVDAP--------RYCAKIPHAQNSVKTRHLYVCT--GCGTRFE--- 14 P96628/4-150 83.5% 15.0% IKHELCHYHLHLE--GKGY--KHRDRDFRMLLQQVNAP--------RFCTPLKKKAEN-KKTYMYICT--TCGQQYI--- 15 CAC96130/4-147 82.4% 13.4% MKHELCHYHLHLE--KKGY--QHRDKDFRELLKKVDAP--------RFCAAIPREI----TMHEYTCK--SCGKSFL--- 16 Q9KUP4/12-161 88.2% 14.7% IPHEIAHLITYQLY-GRVR--PHG-VEWQQVMSQVFKLEPK-----TTHTFSVTSVQG--KTFHYRCA---CREYPL--- 17 O42953/135-301 89.4% 16.4% LAHEVCHLACWII-DNEMQ-NPHG-ACFKAWGKRIMNNMPYI-EITSKHNYDIDF------KYKWLCINEKCNKLYG--- 18 Q9I4E9/7-161 90.0% 17.6% VAHEVAHLIAHQLFGPRIR--PHG-EEWQLIMRGIYGLPPD-----RCHTYAVKRRAT--TRYLYRCH---CPEHNDFPF 19 Q9CIS0/5-145 80.6% 14.5% ILHELTHYHLYRS--KRGY--KHRDADFKRLLSQVGGL--------RYAPSVIDKK----IKYYYSCQ--NCGQLYP--- 20 AAL21967/16-165 88.2% 15.9% VPHELAHLLVWKHF-GRKA--PHG-KEWKWMMESVLGVPAR-----RTHQFALQSVRR--NTFPYHCQ---CQQHQL--- 21 Q9ZX00/1-147 80.0% 19.0% ITHELAHALVG----GRH---GHD-AVWAAKHRELGGNGK------RCFEHFDESA-------PWIGT---CGHGKQF-- 22 Q9W4W3/486-611 81.8% 13.6% LLHEMCHVAAFLF--NREL--GHG-DNCRRWTYQAKMAFPE-------VPALMECI----ASFMYTCS--MCSRSSYGL- 23 ORF_Mcn 86.5% 15.5% LAHEMCHVAVYMVDNKASI--AHN-DNWLYWVRKVIREYEN------IDIKRQHCY----NIDDNACY--MCSNCNHMH- consensus/100% h.HEhhHhh.h.....t.....Ht...h..h..t...................t............s....C........ consensus/90% l.HEhhHhhha....tc.....Ht..tap.hhtph.t..........hh....p........h.a.C....Ctp...... consensus/80% l.HEhsHhhha....tchh...Ht..pap.hhppl.t.........hht.h..p.......pa.a.Ct...Ctpt..... consensus/70% lhHElsHhhhah...s+hh...Ht.tpaphhhppl.t.........hhpsh..p.......pa.YtCp...Ctpp..... cov pid 161 . . .] 191 1 Q9NTV0/43-214 100.0% 100.0% YVKRATNREPSAHDYWWAEHQKTCGGTYIKI 2 Q22557/18-192 100.0% 63.6% YVKRSCNRAPGPNDRWWSQHQQSCGGNFLKV 3 Q9VXU6/122-295 100.0% 57.0% YVKRTSNRAPGPNDQWWKMHQRECSGTFLKL 4 SPRT_HAEIN/3-15 88.2% 15.9% TIRRHNKIMKE---NIEYLC-KKCRGKLVFV 5 CAC89775/16-167 88.2% 16.5% TIRRHNKVLRG---ESEYRC-RQCGEKLQFI 6 Q9CM18/16-165 88.2% 18.8% SVRRHHNIQSG---KAIYFC-KKCKVELILQ 7 Q9W554/821-975 85.3% 19.1% RSRKVED----------LRC-RICRGPITLF 8 Q23462/296-453 85.9% 17.2% RQSKSLDT-------SRKAC-GRCFGRFILY 9 CAC60255/519-67 87.6% 15.0% CYTKSLDT-------SRFIC-AKCKGSLVMV 10 Q99SJ0/4-149 83.5% 11.0% RIRKVDT--------NRMRC-GHCNGKLRMK 11 Q9A0W7/1-144 82.4% 12.8% RKRRINL--------AKYVC-GNCHGKLMEK 12 Q97RB5/1-146 83.5% 13.4% RKRRIDT--------QRYRC-GLCRGKLLLV 13 Q9JWQ2/4-151 83.5% 16.1% RKREVDT--------SRYVC-GKCNGRLKKI 14 P96628/4-150 83.5% 15.0% KKRAMNP--------DRYRC-GKCRGKIKRI 15 CAC96130/4-147 82.4% 13.4% RQRRFNV--------NRYRC-GSCGGRLKQT 16 Q9KUP4/12-161 88.2% 14.7% TIRRHNKVLRG---EATYRC-QSCQQNLIYQ 17 O42953/135-301 89.4% 16.4% RHSKSINP-------QKQVC-RLCKSQIKQI 18 Q9I4E9/7-161 90.0% 17.6% SPQRHTLVAKG----RRYYC-RRCKATLVFT 19 Q9CIS0/5-145 80.6% 14.5% RQRKIDT--------KKYRC-GKCRGKLILK 20 AAL21967/16-165 88.2% 15.9% TVRRHNRVVRG---EAVYRC-VHCGEPLVAG 21 Q9ZX00/1-147 80.0% 19.0% TRYRAPKRLDG------WRC--RCARGGSPI 22 Q9W4W3/486-611 81.8% 13.6% ADLKSYN----------IRC-YYCQFEVSVK 23 ORF_Mcn 86.5% 15.5% RLTEDLN---------FKLCKCSCGGVLLCT consensus/100% ...t...............p...C...h... consensus/90% h.pc.............hhp...Ctt.h..h consensus/80% p.p+..p..........hhC.tpCttphhhh consensus/70% php+hpp.........hhhC.tpCtuplhhh