cov    pid   1 [        .         .         .         .         :         .         .         . 80 
1 pr5_arath      100.0% 100.0%     FTLRNNCPTTVWAGTLAG-QGPKLGDGGFELTPGASRQLTAPAGWS-GRFWARTGCNFDASGNGRCVTGDCGG--LRCNG    
2 tlp_pruav      100.0%  57.3%     ISFKNNCPYMVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWN-GRFWARTGCSTDASGKFVCATADCASGQVMCNG    
3 tlph_arath      98.1%  57.1%     --FYNKCKHPVWPGIQPSAGQNLLAGGGFKLPANKAHSLQLPPLWS-GRFWGRHGCTFDRSGRGHCATGDCGG-SLSCNG    
4 iaat_maize      92.5%  46.8%     FTVVNQCPFTVWAASVPV-------GGGRQLNRGESWRITAPAGTTAARIWARTGCQFDASGRGSCRTGDCGG-VVQCTG    
5 osl3_arath      91.1%  44.5%     FEILNQCSYTVWAAASP--------GGGRRLDAGQSWRLDVAAGTKMARIWGRTNCNFDSSGRGRCQTGDCSG-GLQCTG    
6 olpa_tobac      92.1%  44.1%     FEVHNNCPYTVWAAATPV-------GGGRRLERGQSWWFWAPPGTKMARIWGRTNCNFDGAGRGWCQTGDCGG-VLECKG    
7 thm2_thada      92.5%  42.5%     FEIVNRCSYTVWAAASKG--DAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDDSGRGICRTGDCGG-LLQCKR    
8 olp1_lyces      99.5%  41.7%     LTLVNNCPYTIWPAIQPNAGHPVLERGGFTLHSLTHRSFPAPNAHWSGRIWARTGCNYQH-GKFYCATGDCGG-RIECDG    
  consensus/100%                   ..hhNpC.h.lWsu...........tsGhpL...tth.h.h.s.h..u+hWuRpsC.hpt.Gph.C.TuDCuu..l.Cpt    
  consensus/90%                    ..hhNpC.h.lWsu...........tsGhpL...tth.h.h.s.h..u+hWuRpsC.hpt.Gph.C.TuDCuu..l.Cpt    
  consensus/80%                    hphhNpCsasVWsuh.ss.......sGGhpLttttuhph.sssshp.uRhWuRTsCpaDtuG+hhCtTGDCuG..lpCpG    
  consensus/70%                    hplhNpCsaTVWsus.ss.......sGGhpLssspSaplssPsuhp.uRhWuRTsCsFDsSG+GhCtTGDCGG..lpCsG    

                    cov    pid  81          .         1         .         .         .         .         :         . 160
1 pr5_arath      100.0% 100.0%     -GGVPPVTLAEFTLVG-DGGKDFYDVSLVDGYNVKLGIRPSG--GSGDCKYAGCVSDLNAACPDMLKVMDQN---NVVAC    
2 tlp_pruav      100.0%  57.3%     NGAIPPATLAEFNIPA-GGGQDFYDVSLVDGFNLPMSVTPQG--GTGDCKTASCPANVNAVCPSELQKKGSDG--SVVAC    
3 tlph_arath      98.1%  57.1%     AGGEPPATLAEITLG---PELDFYDVSLVDGYNLAMSIMPVK--GSGQCTYAGCVSDLNQMCPVGLQVRSRNGK-RVVAC    
4 iaat_maize      92.5%  46.8%     YG-RAPNTLAEYALKQ-FNNLDFFDISILDGFNVPYSFLPDGGSGCSR--GPRCAVDVNARCPAELRQDGV--------C    
5 osl3_arath      91.1%  44.5%     WG-QPPNTLAEYALNQ-FNNLDFYDISLVDGFNIPMEFSPTS-SNCHR---ILCTADINGQCPNVLRAPGG--------C    
6 olpa_tobac      92.1%  44.1%     WG-KPPNTLAEYALNQ-FSNLDFWDISVIDGFNIPMSFGPTK-PGPGKCHGIQCTANINGECPGSLRVPGG--------C    
7 thm2_thada      92.5%  42.5%     FG-RPPTTLAEFSLNQ-Y-GKDYIDISNIKGFNVPMDFSPTT-RGCRG---VRCAADIVGQCPAKLKAPGGG-------C    
8 olp1_lyces      99.5%  41.7%     LGGAAPATLAQFVLHHGHADFSTYGVSLVDGFNIPLTVTPHE--GKGVCPVVGCRANLLESCPAVLQFRSHGGHGPVVGC    
  consensus/100%                   .G..sPsTLAphsl.....t.shhslS.lcGaNl.hth.P.t..s.t......C.ssl.t.CPs.Lp..s.........C    
  consensus/90%                    .G..sPsTLAphsl.....t.shhslS.lcGaNl.hth.P.t..s.t......C.ssl.t.CPs.Lp..s.........C    
  consensus/80%                    .G..sPsTLAEasL.t..sshDaaDlSllDGaNlshsh.Ppt..Gstt...htCsuslst.CPs.Lph.ut........C    
  consensus/70%                    hG.tPPsTLAEasLst.hsshDFaDlSllDGFNlPhshtPst..Gsup..hstCsuslNutCPs.Lph.ut........C    

                    cov    pid 161          .         .         .         2         .         .      ] 227
1 pr5_arath      100.0% 100.0%     KSACERFNTDQYCCRGANDKPETCPPTDYSRIFKNACPDAYSYAYDDETSTFTCTG--ANYEITFCP    
2 tlp_pruav      100.0%  57.3%     LSACVKFGTPQYCCTPPQNTPETCPPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGG-PNYAITFCP    
3 tlph_arath      98.1%  57.1%     KSACSAFNSPQYCCTGLFGNPQSCKPTAYSKIFKVACPKAYSYAYDEPTSIATCSK--ANYIVTFCP    
4 iaat_maize      92.5%  46.8%     NNACPVFKKDEYCCVGSAANN--CHPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAG-TNYKVVFCP    
5 osl3_arath      91.1%  44.5%     NNPCTVFQTNQYCCTNGQ-GS--CSDTVYSRFFKQRCPDAYSYPQDDPTSTFTCTN--TNYRVVFCP    
6 olpa_tobac      92.1%  44.1%     NNPCTTFGGQQYCCTQ---GP--CGPTELSRWFKQRCPDAYSYPQDDPTSTFTCTSWTTDYKVMFCP    
7 thm2_thada      92.5%  42.5%     NDACTVFQTSEYCCTT---GK--CGPTEYSRFFKRLCPDAFSYVLDKP-TTVTCPGS-SNYRVTFCP    
8 olp1_lyces      99.5%  41.7%     KSACEAFKSDEFCCRNHYNSPQTCKPSSYSQFFKHACPATFTYAHDSPSLMHECSSP-RELKVIFCH    
  consensus/100%                   .ssC.hFtt.paCCh....t...C.so.hSphF+..CPtsaoYs.Dp...hhpCst...ph.lhFC.    
  consensus/90%                    .ssC.hFtt.paCCh....t...C.so.hSphF+..CPtsaoYs.Dp...hhpCst...ph.lhFC.    
  consensus/80%                    pssC.hFtsspYCCps...ss..C.PTtYSchFKttCPcAaSYs.Dc.pshhTCss..ssYtlhFCP    
  consensus/70%                    psACssFpospYCCss...ss..CtPTsYS+hFKptCPDAYSYshD-sooTaTCsu..sNYcVsFCP