cov pid 1 [ . . . . : . . . 80 1 Q9VM22/232-400 100.0% 100.0% RPIIELPHVLYINAQLPREHRHK--WRFLFSSKINGESFSTMLGKVLDKGP----------------------TLFFIED 2 BAB13435/260-4 99.4% 51.5% ESILDVLSVMYINAQLPREQRHR--WRLLFSSELHGHSFSQLCGHITHRGP----------------------CVAVLED 3 Q21342/177-344 98.8% 31.2% THLMGNIDQLVLNSHLPFDRRKN--WTLLYSNMKHGQSFSQLVKCINGEGP----------------------CMIVIRS 4 BAB08948/215-3 98.8% 30.1% RLLLKKEYAWHIGGALPHHELVE--WKLLYHSSVHGQSFNTFLGHTSNTGMS--------------------ASVLIIKD 5 Q08952/73-273 95.3% 19.1% NKLLTPEMCDEIRTLMPTRIQLYTEWNLLYSLEQHGSSLHSLYSNVAPDSKEFRR----------------VGYVLVIKD 6 Q9ULP9/378-590 94.7% 15.8% SEIVSVREMRDIWSWVPERFALC-QPLLLFSSLQHGYSLARFYFQCEGHEP----------------------TLLLIKT 7 Q9VIH7/220-398 94.7% 18.1% SHTLTIRELFTLWSWLPVRITMY-QPVLLYTTEEHGCSLTTFYVRVEQHEP----------------------TLLMIKT 8 Q9TY02/362-535 95.3% 21.4% SQILDELMIRQVMDILPPRAEGY-PWVNIYNSEKHGFSLATMYRKMAEFDEDLS------------------PVLLIIRD 9 P90882/664-837 95.3% 21.4% SQILDELMIRQVMDILPPRAEGY-PWVNIYNSEKHGFSLATMYRKMAEFDEDLS------------------PVLLIIRD 10 4731586/105-26 94.7% 26.2% TEILTEEHREKLCSHLPARAEGY-SWSLIFSTSQHGFALNSLYRKMARLES---------------------PVLIVIED 11 Q9VNA1/1163-13 94.7% 26.2% TEILTEEHREKLCSHLPARAEGY-SWSLIFSTSQHGFALNSLYRKMARLES---------------------PVLIVIED 12 10954046/201-3 94.7% 22.7% SELLLPDQIEKLTKHFPPRTIGY-PWTLVYGTGKHGTSLKTLYRTMTGLDT---------------------PVLMVIKD 13 O14284/12-188 95.3% 15.7% DGLITDELASHIVENLPARYASAETWKRIYSLQHDGASLQTMYLACEKEKARSGHP--------------KGACILAVRD 14 Q9NKQ9/1438-17 96.4% 11.5% VSVLSRACRRLLHNELPLLQQYS-PWRVIYSTRMHGVSLSTLFSNCRREVERQGLSGYAVDSAVTTTLSDSKPMLLVLEL 15 BAB08890/295-4 95.3% 13.6% KSTISEEI---LSSCFPGNSGEP-NEHLLYRSYYHGKGMNRLWSNVEGYHAP---------------------ILVIISA 16 Q9N3V5/1-166 79.9% 17.8% MWYLQSSLPAVYFPAKPTETSGESHWTPLYTSLQHGISTNRFETLVFDYRG---------------------PTVTIFRM 17 Q9VL57/327-492 84.6% 13.7% SASTAVQIFKDKLSMMPS------HWTLLYNSNEHGVGANRFLHHVLGYRG---------------------PTLVLLHT 18 O94644/273-499 97.6% 14.7% FAILSPLIHAQICFFLPKSVWQVNGLTSLFRASFHGYSMYALERKMCNYHN---------------------PSILLIKA 19 Q9VLV6/157-331 95.3% 12.0% SQILKNDNLALQTVLNNWVGVGKQSWRLVFRASTHGYDSGAFHRYCDGVAP----------------------CMVIGLG consensus/100% ...h............s...........lat...pG.s..th...h............................hhhh.. consensus/90% ..hht......h...hP...........lap...cG.uhtth...h.t.t........................hhhhp. consensus/80% pthlp...h..l.s.hP.p......hh.laps..HG.uhtphhtphtt.t.......................slhllcs consensus/70% ptlls...h..lhshhPhchth...Wphlasop.HGhShsphhtphtthts......................sllllcs cov pid 81 . 1 . . . . : . 160 1 Q9VM22/232-400 100.0% 100.0% ----------------------------------------------EDQYIFGGYASETWSVKPQ---------FGGDDS 2 BAB13435/260-4 99.4% 51.5% ----------------------------------------------HDKHVFGGFASCSWEVKPQ---------FQGDNR 3 Q21342/177-344 98.8% 31.2% ----------------------------------------------MKGRRFGFFASQGFLAGPQ---------YRGTAE 4 BAB08948/215-3 98.8% 30.1% ----------------------------------------------TEGYVYGGYASQPWERYSD---------FYGDMK 5 Q08952/73-273 95.3% 19.1% ----------------------------------------------RKNGIFGAYSNEAFHPNEHR-------QYTGNGE 6 Q9ULP9/378-590 94.7% 15.8% ----------------------------------------------TQKEVCGAYLSTDWSERNK---FGGKLGFFGTGE 7 Q9VIH7/220-398 94.7% 18.1% ----------------------------------------------CNNEVFGAYCSSRWFERNVKDDKGQRQAYFGTGE 8 Q9TY02/362-535 95.3% 21.4% ----------------------------------------------TKEHVFGAVVSSAIRPNDH---------FFGTGD 9 P90882/664-837 95.3% 21.4% ----------------------------------------------TKEHVFGAVVSSAIRPNDH---------FFGTGD 10 4731586/105-26 94.7% 26.2% ----------------------------------------------TEHNVFGALTSCSLHVSDH---------FYGTGE 11 Q9VNA1/1163-13 94.7% 26.2% ----------------------------------------------TEHNVFGALTSCSLHVSDH---------FYGTGE 12 10954046/201-3 94.7% 22.7% ----------------------------------------------SDGQVFGALASEPLKVSDG---------FYGTGE 13 O14284/12-188 95.3% 15.7% ----------------------------------------------TDGDVFGVFIPDYLIPAPH---------YFGSEE 14 Q9NKQ9/1438-17 96.4% 11.5% PASTTLQFSEDDAGVREAWADADTSSSTTRPEARWQADDGGRRHRRRNKLFVGAFLSDLLRLESRR--------YYGSQD 15 BAB08890/295-4 95.3% 13.6% SCKVEHEATSS-----------------------------------ERKWVIGAILQQGFENRDA---------FYGSSG 16 Q9N3V5/1-166 79.9% 17.8% K----------------------------------------------DGRVVVIAADQEWRHSGNR--------FGGTFT 17 Q9VL57/327-492 84.6% 13.7% ----------------------------------------------KDEQTYCVASPSEWKETHL---------FVGGEG 18 O94644/273-499 97.6% 14.7% KKINANHKSSSRPISLDATIPRKYPPHCIGTDKAVPQKFG--ADFHNENILLGAYISTRWRQSHMG--------FFGDHS 19 Q9VLV6/157-331 95.3% 12.0% ----------------------------------------------SHGEISGGYTDVAWAKTSRKG-------GYVQSE consensus/100% ...............................................pt.h.shh....h..............h.st.t consensus/90% ...............................................pt.hhshh.sp.h..t...........ahGs.t consensus/80% ..............................................pct.lhGshhsp.ht.pst.........ahGstp consensus/70% ..............................................pcttlhGuhsspthp.psp.........ahGstc cov pid 161 . . . 2 . . . . 240 1 Q9VM22/232-400 100.0% 100.0% S-LLYTLS-----------------------------PAMRCFSATTYNN------------------------------ 2 BAB13435/260-4 99.4% 51.5% C-FLFSIC-----------------------------PSMAVYTHTGYND------------------------------ 3 Q21342/177-344 98.8% 31.2% C-FLFQLA-----------------------------PKIATFDATGRTE------------------------------ 4 BAB08948/215-3 98.8% 30.1% S-FLFQLN-----------------------------PKAAIYRPTGANTNI---------------------------- 5 Q08952/73-273 95.3% 19.1% C-FLWKLDKVPDVNISEKEESEQEGKEGKEEGDKEERWRFSGYPYTGVN------------------------------- 6 Q9ULP9/378-590 94.7% 15.8% C-FVFRLQ-----------------------------PEVQRYEWVVIKHPELTKPPPLMAAEPTAPLSHSASSDPADRL 7 Q9VIH7/220-398 94.7% 18.1% T-FLFSLY-----------------------------PERAKYPWVGIEG--------------DKDLGHSS-------- 8 Q9TY02/362-535 95.3% 21.4% SCLLWRFTGEVPHT-----------------------RELRQYNWTGDNQ------------------------------ 9 P90882/664-837 95.3% 21.4% SCLLWRFTGEVPHT-----------------------RELRQYNWTGDNQ------------------------------ 10 4731586/105-26 94.7% 26.2% S-LLYKFN-----------------------------PSFKVFHWTGENM------------------------------ 11 Q9VNA1/1163-13 94.7% 26.2% S-LLYKFN-----------------------------PSFKVFHWTGENM------------------------------ 12 10954046/201-3 94.7% 22.7% T-FVFTFC-----------------------------PEFEVFKWTGDNM------------------------------ 13 O14284/12-188 95.3% 15.7% T-FLWKYFPP---------------------------KKYVHYPFVGNSN------------------------------ 14 Q9NKQ9/1438-17 96.4% 11.5% C-FVFQLLVPGTVEG------------------EATASGASAASAGPQLRVHR--------------------------- 15 BAB08890/295-4 95.3% 13.6% N--LFSIS-----------------------------PVFHAFSSSGKEKNFAYS------------------------- 16 Q9N3V5/1-166 79.9% 17.8% S--FFEIV-----------------------------PNIRRIDGANS-------------------------------- 17 Q9VL57/327-492 84.6% 13.7% S-CVIQLL-----------------------------PKFVILEKKPNILYLN--------------------------- 18 O94644/273-499 97.6% 14.7% T-LLFQLQ-----------------------------PIHQVYYASNLDKNYCMFDKN---------------------- 19 Q9VLV6/157-331 95.3% 12.0% RAFLFALNPANG-------------------------EQPVKFDIVKKP------------------------------- consensus/100% p..hhth...................................h..................................... consensus/90% s..laph................................h..h..ss................................. consensus/80% s.hlaph...............................ththa.hss................................. consensus/70% s.hLapht.............................sphthaphss.p............................... cov pid 241 : . . . . 3 . . 320 1 Q9VM22/232-400 100.0% 100.0% ---------------HYQYLNLNQQTMPNGLGMGGQFDFWGLWIDCSFGDGQS--VESCTTYRDYVQLS----------- 2 BAB13435/260-4 99.4% 51.5% ---------------HYMYLNHGQQTIPNGLGMGGQHNYFGLWVDVDFGKGHSRAKPTCTTY-NSPQLS----------- 3 Q21342/177-344 98.8% 31.2% ---------------NYVYLNYQQQQHPNGLGIGGTESVWPLFIHEEFGGGTCQ---KNSSSFEPCHIA----------- 4 BAB08948/215-3 98.8% 30.1% ---------------QWCATNFTSENIPNGIGFGGKINHFGLFISASFDQGQT----FECTTFGSPSLS----------- 5 Q08952/73-273 95.3% 19.1% ----------------EFAIYCTSEFLSMGAGDGH----YGLLCDDGLLHGVSN---PCQTYGNEVLSK----------- 6 Q9ULP9/378-590 94.7% 15.8% SPFLAARHFNLPSKTESMFMAGGSDCLIVGGGGGQ-----ALYIDGDLNRGRTS---HCDTFNNQPLC------------ 7 Q9VIH7/220-398 94.7% 18.1% ----------------ELFMAADSKMITIGGGEGQ-----AIWMDENIRFGKTD---SCKTFNNPPLCP----------- 8 Q9TY02/362-535 95.3% 21.4% -----------------YFVNAAKDSLSIGAGSGR----NGLWLDADLNHGSSQ---KCETFDNEPLCG----------- 9 P90882/664-837 95.3% 21.4% -----------------YFVNAAKDSLSIGAGSGR----NGLWLDADLNHGSSQ---KCETFDNEPLCG----------- 10 4731586/105-26 94.7% 26.2% -----------------YFIKGNMESLSIGAGDGR----FGLWLDGDLNQGRSQ---QCSTYGNEPLA------------ 11 Q9VNA1/1163-13 94.7% 26.2% -----------------YFIKGNMESLSIGAGDGR----FGLWLDGDLNQGRSQ---QCSTYGNEPLA------------ 12 10954046/201-3 94.7% 22.7% -----------------FFIKGDMDSLAFGGGGGE----FALWLDGDLYHGRSH---SCKTFGNRTLS------------ 13 O14284/12-188 95.3% 15.7% -----------------FVAYCTKSFLAFGGGNGR----YSLWLDGSLEYAYSS---RTPAFENNPLSYRG--------- 14 Q9NKQ9/1438-17 96.4% 11.5% -----------ATRSNTQYINCRATSIVIGGGEGG----SSIYLDDTLCHGATS---ACATFASPPLSTWVSTPCEAAGD 15 BAB08890/295-4 95.3% 13.6% ---------HLHPAGGVYDAHPKPVGIGFGGTLGN----ERIFIDEDFAKITVRHHAVDKTYQSGSLFPNQG-------- 16 Q9N3V5/1-166 79.9% 17.8% -----------------IYCNLKLRSSAYGLSFKN-----ELKIEKDFD------------------------------- 17 Q9VL57/327-492 84.6% 13.7% -----------------TSIRGYPKGLRAGADPRK----PIIAVDEHFENIDCK-------------------------- 18 O94644/273-499 97.6% 14.7% -------------VGLGFGLSRHKVTNKVQYDVPG----VCMYIDDGLEYGLFR-HAGDGAFKPATNYEN---------- 19 Q9VLV6/157-331 95.3% 12.0% -----------------YAICYHPDCGPIFGAGAD----LLISSNCNTNMDSYSNLPHSYDGTNAAHLTLFG-------- consensus/100% ...................h..........hs..t......h..p.th................................ consensus/90% ...................h.ht......ths.tt......lhhptth................................ consensus/80% .................hhhtht.pths.Ghu.ut.....tlhl-tsht.s.sp....s.sh.s.s.............. consensus/70% .................hhhphp.pslshGhG.Gt.....slalDsshttGpsp...tstoats.s.............. cov pid 321 . . ] 346 1 Q9VM22/232-400 100.0% 100.0% ----------KRKQFKIRNMEVWAVG 2 BAB13435/260-4 99.4% 51.5% ----------AQENFQFDKMEVWAVG 3 Q21342/177-344 98.8% 31.2% ----------EEDEFKIKTIEAWRPG 4 BAB08948/215-3 98.8% 30.1% ----------KTSRIQPEVIECWGIV 5 Q08952/73-273 95.3% 19.1% ----------EGKKFSIVALEVWRVG 6 Q9ULP9/378-590 94.7% 15.8% -----------SENFLIAAVEAWGFQ 7 Q9VIH7/220-398 94.7% 18.1% -----------SGDFEIRVLEVYGFV 8 Q9TY02/362-535 95.3% 21.4% ----------DDQDFIIQFIEAYGFR 9 P90882/664-837 95.3% 21.4% ----------DDQDFIIQFIEAYGFR 10 4731586/105-26 94.7% 26.2% ----------PQEDFVIKTLECWAFV 11 Q9VNA1/1163-13 94.7% 26.2% ----------PQEDFVIKTLECWAFV 12 10954046/201-3 94.7% 22.7% ----------KKEDFFIQDIEIWAFE 13 O14284/12-188 95.3% 15.7% ---------CPDQRIQIVDIELWVLE 14 Q9NKQ9/1438-17 96.4% 11.5% GADGESDVHRRQKSLCVLNVEVIVMD 15 BAB08890/295-4 95.3% 13.6% ---------YLPVEALVLDIEAWGLG 16 Q9N3V5/1-166 79.9% 17.8% ---------------EILDIEVWGCA 17 Q9VL57/327-492 84.6% 13.7% -----------GLAAGLMSIEVWGCG 18 O94644/273-499 97.6% 14.7% --------FEYEERFLIQDLEVIGVD 19 Q9VLV6/157-331 95.3% 12.0% -----------DYNFTITDYEVYTLS consensus/100% ...................hEhhh.. consensus/90% .............th.h..hEhhhh. consensus/80% ...........t.ph.l.slEsash. consensus/70% ...........ppph.I.slEsauhs