cov    pid  1 [        .         .         .         .         :         .         .         . 80 
 1 TTHY_CHICK     100.0% 100.0%    DSKCPLMVKVLDAVRGSPAANVAVKVFKKAADGTWQDFATGKTTEFGEIHELTTEEQFVEGVYRVEFDTSSYWKGLGLSP    
 2 TTHY_HUMAN     100.0%  77.7%    ESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISP    
 3 TTHY_MACEU     100.0%  76.0%    HSKCPLMVKVLDAVRGRPAVNVDVKVFKKTEEQTWELFAAGKTNDNGEIHELTTDDKFGEGLYKVEFDTISYWKALGVSP    
 4 TTHY_MACGI     100.0%  75.2%    HSKCPLMVKVLDAVRGRPAVNVDVKVFKKTEEQTWELFAAGKTNDNGEIHELTTDDKFGEGLYKVEFDTISYWKALGVSP    
 5 TTHY_MONDO     100.0%  77.7%    DSKCPLMVKVLDAVRGSPAVNVNVKVFKKSEEQTWEPFATGKTNDYGEIHELTNDEKFGEGLYKVEFDTFSYWNALGVSP    
 6 TTHY_MOUSE     100.0%  80.2%    ESKCPLMVKVLDAVRGSPAVDVAVKVFKKTSEGSWEPFASGKTAESGELHGLTTDEKFVEGVYRVELDTKSYWKTLGISP    
 7 TTHY_PETBR     100.0%  75.2%    DSKCPLMVKVLDAVRGRPAVNVDVKVFKKTEKQTWELFASGKTNDNGEIHELTSDDKFGEGLYKVEFDTISYWKALGVSP    
 8 TTHY_PIG       100.0%  81.0%    ESKCPLMVKVLDAVRGSPAVNVGVKVFKKAADGTWEPFALGKTSEFGELHGLTTDEKFVEGIYKVELDTKSYWKALGISP    
 9 TTHY_RABIT     100.0%  81.0%    DSKCPLMVKVLDAVRGSPAVDVSVHVFKKAADETWEPFASGKTSKTGELHGLTTSEKFVEGVYKVELDTKSYWKALGISP    
10 TTHY_RAT       100.0%  81.0%    ESKCPLMVKVLDAVRGSPAVDVAVKVFKKTADGSWEPFASGKTAESGELHGLTTDEKFTEGVYRVELDTKSYWKALGISP    
11 TTHY_SHEEP     100.0%  79.3%    ESKCPLMVKVLDAVRGSPAANVGVKVFKKAADETWEPFASGKTSDSGELHGLTTEDKFVEGLYKVELDTKSYWKSLGISP    
12 TTHY_SMIMA     100.0%  76.0%    DSKCPLMVKVLDSVRGSPAVNVDVKVFKKTEEQTWELFASGKTNNNGEIHELTSDDQFGEGLYKVEFDTVSYWKTFGISP    
13 TTHY_TILRU     100.0%  81.8%    DSKCPLMVKVLDAVRGRPATSIAVKVSKMSEEGDWKEFANGKTNEFGEIHELTTDEQFVQGLYKVEFDTSSYWKALGVSP    
   consensus/100%                  cSKCPLMVKVLDuVRGpPAhslsV+V.+hstctsWp.FA.GKTsp.GElHtLTsp-pFspGlY+VEhDT.SYWpshGlSP    
   consensus/90%                   cSKCPLMVKVLDAVRGpPAssVsV+VFKKst-toWc.FAsGKTsc.GElHtLTo--pFsEGlY+VEhDT.SYWKsLGlSP    
   consensus/80%                   -SKCPLMVKVLDAVRGpPAssVsVKVFKKst-toWE.FAsGKTs-.GElHtLTo--pFsEGlY+VEhDThSYWKuLGlSP    
   consensus/70%                   -SKCPLMVKVLDAVRGpPAlsVsVKVFKKst-tTWE.FAsGKTs-.GElHtLTT--cFsEGlYKVEhDThSYWKuLGlSP    

                     cov    pid 81          .         1         .         .] 121
 1 TTHY_CHICK     100.0% 100.0%    FHEYADVVFTANDSGHRHYTIAALLSPFSYSTTAVVSDPQE    
 2 TTHY_HUMAN     100.0%  77.7%    FHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE    
 3 TTHY_MACEU     100.0%  76.0%    FHEYADVVFTANDAGHRHYTIAALLSPYSFSTTAIVSNPTE    
 4 TTHY_MACGI     100.0%  75.2%    FHEYADVVFTANDAGHRHYTIAAQLSPYSFSTTAIVSNPTE    
 5 TTHY_MONDO     100.0%  77.7%    FHEYADVVFKANDAGHRHYTIAALLSPYSYSTTAVVSNPKD    
 6 TTHY_MOUSE     100.0%  80.2%    FHEFADVVFTANDSGHRHYTIAALLSPYSYSTTAVVSNPQN    
 7 TTHY_PETBR     100.0%  75.2%    FHEYADVVFTANDAGHRHYTIAAQLSPYSFSTTAIVSNPTE    
 8 TTHY_PIG       100.0%  81.0%    FHEYAEVVFTANDSGRRHYTIAALLSPYSYSTTALVSSPKE    
 9 TTHY_RABIT     100.0%  81.0%    FHEYAEVVFTANDSGHRSYTIAALLSPFSYSTTAVVSNPQE    
10 TTHY_RAT       100.0%  81.0%    FHEYAEVVFTANDSGHRHYTIAALLSPYSYSTTAVVSNPQN    
11 TTHY_SHEEP     100.0%  79.3%    FHEYAEVVFTANDSGLRHYTIAALLSPYSYSTTALVSSPKE    
12 TTHY_SMIMA     100.0%  76.0%    FHEYADVVFTANDAGHRHYTIAAQLSPFSFSTTAVVSNPKD    
13 TTHY_TILRU     100.0%  81.8%    FHEYADVVFSANDSGHRHYTIAALLSPFSYSTTAVVSDPKE    
   consensus/100%                  FHEaA-VVFpANDuG.RpYTIAA.LSPaSaSTTAlVosPpp    
   consensus/90%                   FHEaA-VVFoANDuGhR+YTIAA.LSPaSaSTTAlVSsPpp    
   consensus/80%                   FHEYA-VVFTANDuG+RHYTIAA.LSPaSaSTTAlVSsPp-    
   consensus/70%                   FHEYA-VVFTANDuGHRHYTIAALLSPaSaSTTAlVSsPp-