cov pid 1 [ . . . . : . . . 80 1 P73458/1-191 100.0% 100.0% GQAIEYPLTR-------TLIEIHPVRAQVEDIN----------GARVGYIRLNQFSAQ-----ASEEMRQAVQKLEKEN- 2 Q55669/1-192 100.0% 57.8% EVPQEFTLTR-------QLISLSPVAAQLDDSR------P---GQSVGYIRLSQFSAN-----AYKEVAHALHQLEEQG- 3 O66985/1-189 97.9% 46.1% GKPIEVTLVR-------ARIKVPSVKYTNYK--------------GIGYIKISQFTSG-----TSKSLEKAILELENQN- 4 P75023/1-191 100.0% 53.9% SGVFSVTLKR-------ENIEIDSVTYNVKEEG----------ELRVGYIRLDEFSSH-----SAEQMEKAITELNKSR- 5 O23614/1-198 99.0% 40.0% PETRLLTLTR-------ERVSVNPVKSRLCELPGSGSNSP-----KIGYIKLTTFNQN-----ASSAVREAIETLRGNN- 6 O30968/1-191 100.0% 54.5% SQSQTFKLTR-------ANIAIHPVTYNTQTTA----------AGKIGYIRLPEFTQT-----APAQMHRAIEALEKQQ- 7 O51334/1-190 97.9% 38.1% NLTLDFELTR-------EKIEIQTIKYDVINS-------------DIGYIRIVSFNPH-----TSVDFRKALDNLKNKN- 8 Q44879/1-193 97.9% 39.1% DKPLDIKIVR-------DIIKVKAVKYRVEG--------------DIGYLRLIQFTEK-----TFSDLQAAIKDIQSKIP 9 E1342535/1-194 98.4% 40.1% AKPQELELTR-------EIVKIKPIKAHLEKN-------------NIAYIRITTFNES-----TISELKAAVKKLKTESK 10 PRC_ECOLI/1-206 100.0% 32.5% TKTRTVTLTR-------ERIRLEDRAVKMSVKTVG--------KEKVGVLDIPGFYVG-----LTDDVKVQLQKLEKQN- 11 O04073/1-202 99.5% 39.9% SNTRTLQLTR-------QKVTINPVTFTTCSNVAAAALPPGAAKQQLGYVRLATFNSN-----TTAAAQQAFTELSKQG- 12 O83301/1-192 98.4% 37.4% KIFRPFTLTR-------AKIEIPTVKYAKIDP-------------NIAYVRLIEFNPV-----TATRMVETVTELRRQG- 13 O35002/1-192 100.0% 34.4% KKQLSFRIKR-------AEIPLETVFASEKKVQ----------GHSVGYIAISTFSEH-----TAEDFAKALRELEKKE- 14 O34666/1-189 98.4% 36.5% VGNIDLSIKR-------DTIPVETVYSEMKDN-------------NIGEIQITSFSET-----TAKELTDAIDSLEKKG- 15 O84448/1-203 99.5% 28.4% NNDHVIQLRR-------EKILLDSRRVDVSYEPYGN--------GIIGKITLHSFYEGENQVSSEQDLRKAIRELQEKN- 16 O25905/1-189 97.4% 36.1% PKPLVFNIIR-------DIIKLPSVYVKKIKET------------PYLYVRVSGFDK--------NVTKSVLEGLKANP- 17 PRC_HAEIN/1-202 100.0% 27.7% GKSRIITLVR-------DKVRIEDQAAKLTFEKVS--------GKNIAVIKIPSFYIG-----LTEDVKKLLVKLENQK- 18 Q40067/1-196 98.4% 36.7% GPVESMKVQR-------QMAARTPIFYRLEKR--DNENS------SVGYIHIKEFNAV-----AKKDLVSALKRLQNSG- 19 IRBP_BOVIN/1-19 95.8% 18.4% SPEVFEDLIK-------FSFHTNVLEGNVGYLRFDM---------FGDCELLTQVSE--------LLVEHVWKKIVHT-- 20 IRBP_BOVIN_1/1- 96.3% 20.0% SPEELSYLIE-------ALFKTEVLPGQLGYLRFDA---------MAELETVKAVGP--------QLVQLVWQKLVDT-- 21 O57689/1-198 96.3% 19.0% PLEHLAAMIK-------GTVKVEILEGNIGYLKIQH---------IIGEEMAQKVGP--------LLLEYIWDKILPT-- 22 IRBP_BOVIN_2/1- 96.3% 18.3% DEAVRRALVD-------SVFQVSVLPGNVGYLRFDS---------FADASVLEVLGP--------YILHQVWEPLQDT-- 23 O57689_1/1-197 95.8% 13.2% TPEMFIALIK-------SSFQTDVFENNIGYLRFDM---------FGDFEHVATIAQ--------IIVEHVWNKVVDT-- 24 IRBP_BOVIN_3/1- 95.8% 15.4% TLEEIIAGLQ-------DGLRHEILEGNVGYLRVDD---------IPGQEVMSKLRS--------FLVANVWRKLVNT-- 25 P96086/1-191 94.8% 17.9% KRDLMIDILD-------DDRFIRYRSWVEANRRYVHERS----KGTIGYIHIPDMGMM-------GLNEFYRLFINESS- 26 P95871/1-191 94.8% 16.4% NKRVTVKVLK-------DERFLIYRYWVEKNREYVHEKS----KGRLGYIHIPDMMYQ-------GFAEFYRLFMSEFH- 27 O84866/1-210 99.0% 15.6% SSNTEALIIDQTNNPGGSVLYLYALLSMLTDRPLELPKHR---MILTQDEVVDALDWLT---LLENVDTNVESRLALGD- 28 O18857/1-200 96.3% 16.4% TQEELLALFQ-------QIIKYQVLEGNVGYLRVDY---------IPGREMIEKVGE--------FLVNDIWKKVMET-- 29 Q48609/1-197 98.4% 16.0% KRSITKYIKP------KAEIEGNTLILTIPEFTGND-------SQASDYANFLESSFHK------NNYNGVIVDLRGNRG consensus/100% .......h...........h.h.............................h......................h..... consensus/90% .....h.lhp.......t.h.h..h......................t...h.th............ht.hh..l.tp.. consensus/80% s....htlhc.......t.h.hpsh.hpht................hsh.hl.phs...........hpthhppl.pp.. consensus/70% s.th.htlh+.......phlplpslhhpht................huhhpl.phs.........t.hppshppLppp.. cov pid 81 . 1 . . . . : . 160 1 P73458/1-191 100.0% 100.0% ---VVGYIFDLRSNPGGLLYSSVDIARIWLDEG---GIVSTVDRR-----GEVEQQSANKRQLS--NRPLVVLVDGGSAS 2 Q55669/1-192 100.0% 57.8% ---ADGYILDLRNNPGGLLQAGIDIARLWLPES---TIVYTVNRQ-----GTQESFTANGEAAT--DRPLVVLVNQGTAS 3 O66985/1-189 97.9% 46.1% ---VKGFIIDLRNNPGGLLSEAVDVGDLFIPKG--KLIVYTKGRK-----GELHRYFAEREPITQ-GLPVVLLVNKGSAS 4 P75023/1-191 100.0% 53.9% ---ISGYVLDLRGNPGGLLLSSIDIARLWLNRG---EIVSTIDRR-----GGDRHFSANGRSLT--DLPLVVLVNERSAS 5 O23614/1-198 99.0% 40.0% ---VNAFVLDLRDNSGGSFPEGIEIAKFWLDKG---VIVYICDSR-----GVRDIYDTDGSNAIATSEPLAVLVNKGTAS 6 O30968/1-191 100.0% 54.5% ---VQGYVLDLRSDPGGLLDASLQIASMWLKQG---AIVSLVNRD-----RVKDSYNASGHPLT--NKPLVILVDKGSAS 7 O51334/1-190 97.9% 38.1% ---IKSLILDLRLNTGGYFQAAIKMADDILSKG---IIVSTKSRN----SSKPIDYKASSKQVLPSNIKIVALIDRSSAS 8 Q44879/1-193 97.9% 39.1% TDKLKGYVLDLRLNPGGLLDQAISVTDAFLNKG---EIVSTRGRKQ----NDVMRFDAKLGDLTD-EKPIIVLINGGSAS 9 E1342535/1-194 98.4% 40.1% -DNLKGIILDLRNNAGGILDQAIAVSDYFIDSG---VIVTTKGRT----TSSNSETKANEFSLKAPKVPMIVLINGNSAS 10 PRC_ECOLI/1-206 100.0% 32.5% ---VSSVIIDLRSNGGGALTEAVSLSGLFIPAG---PIVQVRDNN----GKVREDSDTDGQVFY--KGPLVVLVDRFSAS 11 O04073/1-202 99.5% 39.9% ---VAGLVLDIRNNGGGLFPAGVNVARMLVDRG---DLVLIADSQ-----GIRDIYSADGNSI-DSATPLVVLVNRGTAS 12 O83301/1-192 98.4% 37.4% ---CDRLILDLRNNPGGLITAAVDVTSSFIPSG---TVVTTKSRVQG--HSITFSVNARAQKLPP-SMPVIVLINRDSAS 13 O35002/1-192 100.0% 34.4% ---IEGLVIDVRGNPGGYLQSVEEILKHFVTKD--QPYIQIAERN-----GDKKRYFSTLTHKK--AYPVNVITDKGSAS 14 O34666/1-189 98.4% 36.5% ---AKGYILDLRGNPGGLMEQAITMSNLFIDKG---KNIMQVEYK----NGSKEVMKAEKERKV--TKPTVVLVNDGTAS 15 O84448/1-203 99.5% 28.4% ---LLGLVLDIRENTGGFLSQAIKVSGLFLTNG---VVVVSRYAD-----GSVKRYRTISPQKFY-DGPLAVLVSKSSAS 16 O25905/1-189 97.4% 36.1% --KAKGIVLDLRGNPGGLLNQAVGLSNLFIKEG---VLVSQKGKN----KEENLEYKANGRAPY-TNLPIAVLVNGGSAS 17 PRC_HAEIN/1-202 100.0% 27.7% ---AEALIVDLRENGGGALTEAVALSGLFITDG---PVVQVRDAYQ----RIRVHEDDDATQQY--KGLLFVMINRYSAS 18 Q40067/1-196 98.4% 36.7% ---ASYFVLDLRDNLGGLVQAGIEIAKLFLNKG-DTVIYTTAGDR-----QVQNTIVADSGPLV--TTPVMVLVNNRTAS 19 IRBP_BOVIN/1-19 95.8% 18.4% ----DALIVDMRFNIGGPTSSISALCSYFFDEG-PPILLDKIYNRPNNSVSELWTLSQLEGERYGSKKSMVILTSTLTAG 20 IRBP_BOVIN_1/1- 96.3% 20.0% ----AALVVDLRYNPGSYSTAVPLLCSYFFEAE-PRRHLYSVFDRATSRVTEVWTLPHVTGQRYGSHKDLYVLVSHTSGS 21 O57689/1-198 96.3% 19.0% ----SAMILDFRSTVTGELSGIPYIVSYFTDPE-PLIHIDSVYDRTADLTIELWSMPTLLGKRYGTSKPLIILTSKDTLG 22 IRBP_BOVIN_2/1- 96.3% 18.3% ----EHLIMDLRQNPGGPSSAVPLLLSYFQSPDASPVRLFSTYDRRTNITREHFSQTELLGRPYGTQRGVYLLTSHRTAT 23 O57689_1/1-197 95.8% 13.2% ----DALIIDLRNNIGGHASSIAGFCSYFFDAD-KQIVLDHIYDRPSNSTRDLQTLEQLTGRRYGSKKSVVILTSGVTAG 24 IRBP_BOVIN_3/1- 95.8% 15.4% ----SALVLDLRHCTGGHVSGIPYVISYLHPGS-TVSHVDTVYDRPSNTTTEIWTLPEALGEKYSADKDVVVLTSSRTGG 25 P96086/1-191 94.8% 17.9% ---YQGLIVDVRFNGGGFVSQLI-IEKLMN-----KRIGYDNPRR-----GTLSPYPTNSVRGK-----IIAITNEYAGS 26 P95871/1-191 94.8% 16.4% ---REGLVVDVRFNRGGFVSGLL-LEKLLL-----KRVGYDYPRN-----GKPIPMPYFSSPKV-----LVGITNEHAGS 27 O84866/1-210 99.0% 15.6% --NMEGYTVDLQV-AEYLKSFGRQVLNCWSKG----DIELSTPIP----LFGFEKIHPHPRVQY--SKPICVLINEQDFS 28 O18857/1-200 96.3% 16.4% ----SSLVLDLQHSRGGEVSGIPFVISYLHQGD-ILLHVDTIYDRPSNTTTEIWTLPQVLGERYSGEKDIVVLTSHNTVG 29 Q48609/1-197 98.4% 16.0% GDLSPMVLGLSPLLPDGTLFTYVDKSSHSKPVE---LQNGEINSG-----GSSTKVSDNKKIKK---APIAVLIDNNTGS consensus/100% ......hhh......t........h.t..........................................h.hhhst.shs consensus/90% .....thlhDhp.s.sG.h.t...h.thh........hh..h.t......t......t...........hhhlhst.ssu consensus/80% ....puhllDlR.ssGGhhpth..l.phhh.tt....hl..h.pp.....t...ph.t..t.hh..thslhlLhsptouo consensus/70% ...hpuhllDLRtNsGGhhstshtlsphahsts...hll.ph.pp.....tth.ph.stttthh..phslhlLssptoAS cov pid 161 . . . 2 . . . . 240 1 P73458/1-191 100.0% 100.0% ASEIVSGALQDNQRAVIVGT-KTFGKGLVQSVRELGD------------GSGMAVTIAKYLTP-----NGRDINKHGIDP 2 Q55669/1-192 100.0% 57.8% ASEILAGALQDNQRATLVGE-KTFGKGLIQSLFELSD------------GAGIAVTVAKYETP-----QHHDIHKLGIMP 3 O66985/1-189 97.9% 46.1% ASEIVAGALQDYHIATLVGE-KTFGKASVQNLIPLSD------------GSAMKLTIAYYYTP-----KGRLIHKKGIKP 4 P75023/1-191 100.0% 53.9% ASEILAGALKEQGRATVVGT-ATYGKGTVQSVNTLSD------------GSGLAVTIARYYPP-----SGTDINRKGISP 5 O23614/1-198 99.0% 40.0% ASEILAGALKDNKRALVYGE-PTYGKGKIQSVFELSD------------GSGLAVTVARYETP-----AHTDIDKVGVTP 6 O30968/1-191 100.0% 54.5% ASEILSGALQDDNRATLVGT-RTFGKGLVQAVEPLDD------------GSGLKLTIAKYYTP-----KGRDINHVGIAP 7 O51334/1-190 97.9% 38.1% ASEVFVGALKDNKRAYIIGE-KSYGKGLIQHVVPFY-------------TGGFKITSSKYYTP-----SGKSIHKVGIEP 8 Q44879/1-193 97.9% 39.1% ASEIVAGALQDHRRATIIGT-QSFGKGSVQTIIPLGE------------NGALRLTTALYYTP-----SGTSIQGIGITP 9 E1342535/1-194 98.4% 40.1% ASEIVAGALQDHKRAIILGT-KSFGKGSVQALTQINS------------RAAVKLTISKYYTP-----SGRSIQAEGIEP 10 PRC_ECOLI/1-206 100.0% 32.5% ASEIFAAAMQDYGRALVVGE-PTFGKGTVQQYRSLNRIYDQMLRPEWPALGSVQYTIQKFYRV-----NGGSTQRKGVTP 11 O04073/1-202 99.5% 39.9% ASEVLAGALKDSKRGLIAGE-RTFGKGLIQTVVDLSD------------GSGVAVTVARYQTP-----AGVDINKIGVSP 12 O83301/1-192 98.4% 37.4% ASEIVSGALKDHKRAYLVGQ-TTYGKGVVQQVFDLNE------------RESLKMTISRYYTP-----SDANIDKSGIPP 13 O35002/1-192 100.0% 34.4% ASEILAGALKEAGHYDVVGD-TSFGKGTVQQAVPMGD------------GSNIKLTLYKWLTP-----NGNWIHKKGIEP 14 O34666/1-189 98.4% 36.5% AAEIMAAALHESSNVPLIGE-TTFGKGTVQTAKEYDD------------GSTVKLTVAKWLTA-----DGEWIHKKGIKP 15 O84448/1-203 99.5% 28.4% AAEIVAQTLQDYGVALIVGDQQTYGKGTIQHQTITGSN---------SQEDFFKVTVGRYYSP-----SGKSTQLEGVKS 16 O25905/1-189 97.4% 36.1% ASEIVAGALQDHKRAVIIGE-KTFGKGSVQMLLPVNK------------DEAIKITTARYYLP-----SGRTIQAKGITP 17 PRC_HAEIN/1-202 100.0% 27.7% ASEIFAAAMQDYRRGIIIGQ-NTFGKGTVQQSRSLNFIYDLDQSP----LGVLQYTIQKFYRV-----NGGSTQLKGVAA 18 Q40067/1-196 98.4% 36.7% ASEIVASALHDNCKSCVSSARRTFGKGLIQSVFELHD------------GSGIVVTVGKYVTP-----NHKDINGDGIKP 19 IRBP_BOVIN/1-19 95.8% 18.4% AAEEFTYIMKRLGRALVIGE-VTSGGCQPPQTYHVDD-------------TDLYLTIPTARSVG--AADGSSWEGVGVVP 20 IRBP_BOVIN_1/1- 96.3% 20.0% AAEAFAHTMQDLQRATIIGE-PTAGGALSVGIYQVGS-----------SALYASMPTQMAMSA----STGEAWDLAGVEP 21 O57689/1-198 96.3% 19.0% IAEDVAYCLKNLKRATIVGE-NTAGGTVKMSKMKVGDT-----------DFYVTVPVAKSINP----ITGKSWEINGVAP 22 IRBP_BOVIN_2/1- 96.3% 18.3% AAEELAFLMQSLGWATLVGE-ITAGSLLHTHTVSLLETP----------EGGLALTVPVLTFID---NHGECWLGGGVVP 23 O57689_1/1-197 95.8% 13.2% AAEEFVFIMKRLGRAMIIGE-TTHGDCQPPETFAVG-------------ETDIFLSIPISHSDT---AQGPSWRVLALLL 24 IRBP_BOVIN_3/1- 95.8% 15.4% VAEDIAYILKQMRRAIVVGE-RTVGGALNLQKLRVG-------------QSDFFLTVPVSRSLGPLGEGSQTWEGSGVLP 25 P96086/1-191 94.8% 17.9% DGDIFSFSFKKLGLGKLIGT-RTWG-GVVGITPKRRL------------IDGTVLTQPEFAFWF--RDAGFGVENYGVDP 26 P95871/1-191 94.8% 16.4% DGDIFSFLFKKYKLGVLIGR-RTWG-GVVGIRPRYRL------------VDKTYISQPEFAVNF--EDVGFGIENYGVDP 27 O84866/1-210 99.0% 15.6% CADFFPVVLKDNDRALIVGT-RTAGAGGFVFNVQFPN---------RTGIKTCSLTGSLAVRE-----HGAFIENIGVEP 28 O18857/1-200 96.3% 16.4% VAEDIAYILKKMRRAIVVGE-QTLGGALDLRKLRIGE-----------SDFFITVPVARSLSPL--GGGSQTWEGSGVVP 29 Q48609/1-197 98.4% 16.0% SGELTALCFKGIPNVKFLGS-DSAGYTSANQTVYLYD------------GSTLQITSAFVKDR-----TNNIYKNFPISP consensus/100% .u-.hs..hpt.....h.ut..o.G.h.......h.................h.hs.............t..h...sl.. consensus/90% su-.hshhhpp.thshlhGp..ohG.s.......h.................h.hs..h.........tt..hp..Gl.s consensus/80% suE.huhhhpc.tpuhllGp.tThGtu.h.thh.ht..............tshhlThshhhps.....tutshpt.Gl.P consensus/70% AuElhuhshpc.t+AhllGp.pTaGtuhhtphhtlsp............tsshtlTlsphhss.....sGpshpthGltP cov pid 241 ] 245 1 P73458/1-191 100.0% 100.0% DVEVE 2 Q55669/1-192 100.0% 57.8% DEVVE 3 O66985/1-189 97.9% 46.1% DVEVK 4 P75023/1-191 100.0% 53.9% DIHLD 5 O23614/1-198 99.0% 40.0% DHPLP 6 O30968/1-191 100.0% 54.5% DITVE 7 O51334/1-190 97.9% 38.1% DLEIK 8 Q44879/1-193 97.9% 39.1% DIVVE 9 E1342535/1-194 98.4% 40.1% DILIE 10 PRC_ECOLI/1-206 100.0% 32.5% DIIMP 11 O04073/1-202 99.5% 39.9% DVQLD 12 O83301/1-192 98.4% 37.4% DLEVR 13 O35002/1-192 100.0% 34.4% TIAIK 14 O34666/1-189 98.4% 36.5% QVKAE 15 O84448/1-203 99.5% 28.4% DIVIP 16 O25905/1-189 97.4% 36.1% DIVIY 17 PRC_HAEIN/1-202 100.0% 27.7% DINFP 18 Q40067/1-196 98.4% 36.7% DYRRL 19 IRBP_BOVIN/1-19 95.8% 18.4% DVAVP 20 IRBP_BOVIN_1/1- 96.3% 20.0% DITVP 21 O57689/1-198 96.3% 19.0% DVDVA 22 IRBP_BOVIN_2/1- 96.3% 18.3% DAIVL 23 O57689_1/1-197 95.8% 13.2% ISQCP 24 IRBP_BOVIN_3/1- 95.8% 15.4% CVGTP 25 P96086/1-191 94.8% 17.9% DVEIE 26 P95871/1-191 94.8% 16.4% DIVVE 27 O84866/1-210 99.0% 15.6% HIDLP 28 O18857/1-200 96.3% 16.4% CVGIP 29 Q48609/1-197 98.4% 16.0% DIQTN consensus/100% ...h. consensus/90% ph.h. consensus/80% cl.h. consensus/70% Dl.l.