cov    pid  1 [        .         .         .         .         :         .] 61
 1 NIDO_HUMAN/1-4 100.0% 100.0%    VPECDAH--GHYAPTQCHGST----GYCWCVD-RDGREVEGTRTRPG-----MTPPCLSTV   
 2 Q14112/2-0     100.0%  63.3%    VPQCDDL--GHFIPLQCHGKS----DFCWCVD-KDGREVQGTRSQPG-----TTPACIPTV   
 3 SAX_RANCA/1-50 100.0%  48.0%    IPQCDEK--GNYQPQQCHGST----GHCWCVN-AMGEKISGTNTPPG----QTRATCERHE   
 4 Q14112/1-51    100.0%  56.0%    IPQCDEQ--GNFLPLQCHGST----GFCWCVD-PDGHEVPGTQTPPG----STPPHCGPSP   
 5 HG2A_HUMAN/1-4  91.8%  43.1%    RPKCDEN--GNYLPLQCYGSI----GYCWCVF-PNGTEVPNTR-------SRGHHNCSESL   
 6 IBP1_BOVIN/1-5  91.8%  28.1%    LPNCNKN--GFYHSKQCETSLEGEPGLCWCVYPWSGKRILGSV------AVRGDPKCQQYF   
 7 IBP2_CHICK/1-5  91.8%  33.3%    IPNCDKH--GLYNLKQCKMSVNGQRGECWCVDPIHGKVIQGAP------TIRGDPECHLFY   
 8 IBP3_BOVIN/1-5  93.9%  32.1%    IPNCDKK--GFYKKKQCRPSKGRKRGFCWCVD-KYGQPLPGFDV-----KGKGDVHCYSME   
 9 IBP5_HUMAN/1-5  91.8%  30.4%    LPNCDRK--GFYKRKQCKPSRGRKRGICWCVD-KYGMKLPGME------YVDGDFQCHTFD   
10 IBP6_HUMAN/1-5  91.8%  33.9%    VPNCDHR--GFYRKRQCRSSQGQRRGPCWCVD-RMGKSLPGSP------DGNGSSSCPTGS   
11 IBP4_BOVIN/1-5  91.8%  29.8%    IPNCDRN--GNFHPKQCHPALDGQRGKCWCVDRKTGVKLPGGL------EPKGELDCHQLA   
12 Q08629/1-47     91.8%  43.1%    IPRCNEE--GYYKATQCHGST----GQCWCVD-KYGNELAGSR-------KQGAVSCEEEQ   
13 Q92563/1-47     93.9%  46.0%    IPSCDED--GYYRKMQCDQSS----GDCWCVD-QLGLELTGTRT-------HGSPDCDDIV   
14 G731_HUMAN/1-4  89.8%  26.0%    DPDCDPE--GRFKARQCNQTS-----VCWCVNSVGVRRTDKGD---------LSLRCDDLV   
15 G732_HUMAN/1-4  87.8%  28.0%    DPDCDES--GLFKAKQCNGTS-----TCWCVNTAGVRRTDKDT----------EITCSERV   
16 G2702404/1-46   89.8%  41.2%    LPRCDLE--GFYKPEQCHDGN------CWCVD-RYGREFDKSRV------QNTLPDCGQYA   
17 THYG_BOVIN/6-0  87.8%  28.3%    YPGPYSD---FSAPLAHFDLRS-----CWCVD-EAGQKLEGTRN-----EPNKVPACPGSC   
18 THYG_BOVIN/5-0  89.8%  34.6%    VPACTSK--GNFLPVQCFNSE------CYCVD-TEGQPIPGTRS-----ALGEPKKCPSPC   
19 Q17457/2-0      93.9%  33.9%    VPKCDVGK-GDFEPVQCDSKK----NQCYCVDTNTGREIQGTRK---PLSNTTKMNCMQID   
20 THYG_BOVIN/3-0  91.8%  37.3%    VPSCHPD--GEYQAAQCQQGG-----PCWCVD-SRGQEIPGTRQ------RGEPPSCAEDQ   
21 THYG_MOUSE/3-0  91.8%  41.2%    IPRCHRD--GHYQTVQCQTEG-----MCWCVD-AQGREVPGTRQ------QGQPPSCAADQ   
22 THYG_BOVIN/1-4  93.9%  41.2%    VPQCAED--GSFQTVQCGKDG----ASCWCVD-ADGREVPGSRQ------PGRPAACLSFC   
23 THYG_BOVIN/2-0  93.9%  37.3%    LPQCQDS--GDYSPVQCDLRR----RQCWCVD-AEGMEVYGTRQ------QGRPARCPRSC   
24 THYG_BOVIN/7-0  95.9%  40.4%    LPQCDAF--GGWEPVQCHAAT----GHCWCVD-GKGEYVPTSLTA----RSRQIPQCPTSC   
25 THYG_BOVIN/8-0  89.8%  26.0%    IPTCLET--GEFARLQASEAG------TWCVDPASGEGVPPGTN--------SSAQCPSLC   
26 THYG_BOVIN/4-0  91.8%  42.0%    VPACTAE--GSYEEVQCFAGD------CWCVD-AQGRELAGSRVR------GGRPRCPTEC   
27 E1247324/1-49   95.9%  37.3%    VPACTAS--GDFERVQCETNG----RQCFCVN-TQGIEVPNSRTR-----DGTRPDCYSIQ   
28 THYG_BOVIN/9-0  95.9%  41.2%    SPACRAED-GGFSPVQCDPAQ----GSCWCVL-GSGEEVPGTRVA------GSQPACESPQ   
29 G2662541/6-0    91.8%  37.3%    LPVCSRN--GNYDQTQCDNKR------CWCVDELSGEEIHGTRKK------KTKNACKSQS   
30 G2662541/2-0    91.8%  31.4%    AMKCDRA--GNFEQYQCDDEG------CFCVDIATGEELPGSRAI------GRKPNCESRN   
31 THYG_BOVIN/10-  95.9%  25.0%    GLQCDQD--SQYRASQRDRTS----GKAFCVD-GEGRRLPWTEAE----APLVDAQCLVMR   
32 THYG_MOUSE/10-  95.9%  26.9%    GLQCDQN--GQYQASQKNRDS----GEVFCVD-SEGRKLQWLQTE----AGLSESQCLMIR   
33 Q22157/1-51     95.9%  32.1%    IPTCSPKNSLLYDKVQCYDVS----IYCWCVDELSGEPKLGSSTT------RGKPKCEETP   
34 G2662541/3-0    91.8%  37.3%    LIKCRPD--GSFEQIQCDTEF------CWCVD-EEGNYVEGTRTG-----EDITPNCPEPC   
35 G2662541/5-0    98.0%  30.2%    PVQCTPE--GLFRKYQCDARL----NQCWCVDKATGVEEIGTRLFT---IGLQSPDCNLPK   
36 Q04901/2-0      89.8%  32.7%    MPRCMES--GAYEPVQQLPDG-----TFMCVD-FDGEEISRSREE---------PRCLTSC   
37 Q04901/1-52     98.0%  35.8%    FPTCTNL--GTFAPRQCTTYD----SVCWCVDQDSGVEIDGTRSLP---REGYGLDCSDVR   
38 G2662541/1-50   93.9%  32.1%    VPFCERN--GRFSSIQCDIQF------CWCVDVHYGSEIAGTRISR---EQRRIDMCREPR   
39 G2662541/4-0    91.8%  32.7%    IPDCDLN--GNFDEVQSHFGL------MWCVG-RSGQEIAGTKSTR-------VPNCDDPR   
40 Q04901/3-0      95.9%  31.5%    VVQCKPD--GEYLPRQCVASY------CFCVD-RNGLEISNSRVETRIAGIGVDLDCQDFN   
41 Q25431/1-50     95.9%  26.9%    IPQCTQD--GYYAVEQCYEGN---GTFCWCADTETGAVKPDTEVH------GARADCERFL   
42 Q17457/1-49     93.9%  25.0%    GLKCNEN--GYYETVQCNSES------CYCVTPHTALVAYDTRTNN----PKTAPKCGTCL   
   consensus/100%                  ...s...........tt..........hhCs....s....................C....   
   consensus/90%                   h.tCp.t..G.a...Qs..t.......saCVs...G..h.ts.............tC....   
   consensus/80%                   hPpCp.p..G.at.hQCt.t.......CaCVs.ttG.tl.sop............pC.p..   
   consensus/70%                   lPpCstp..G.ap.hQCpsst......CWCVD.tpGpcl.soc........tttspC.p.t