cov pid 1 [ . . . . : . . . 80 1 AF132938/1-146 100.0% 100.0% QFTAEFSSRYG-------DCHPVFFIGSLEAAFQEAFYVKAR-DRKLLAIYLHHDESV--LTNVFCS--QMLCAESIVSY 2 AE003808/1-149 100.0% 42.3% QFVENYKARYG-------EPCPEFFVGSLENAKQLACLRSAK-ERKLLAIYLHHGKSI--LSNVFCD--QLMKHESIIQT 3 AF026210/1-156 100.0% 30.8% NFVAIFSDRFCSTPQT-QAFMPPFYTEPLPAAVKEAFDHPNSEHRRPLLFYINHDRSI--AANIFAS--QVLCSETVSTL 4 U41026/1-157 100.0% 22.9% DALKCYTDNFNTRYQIGSTVMPKFYTDTLRNAVKEAFDQENPILCRPLAFFINNENSS--NTRNFVT--NVLCNELVTSY 5 AC051634/1-124 83.6% 21.6% EFEREFGAGRGP---------HFVAEG-FADALQRAQR-----EYKLLFVYLHSPDHP--DTPAFCG--GCLCAEPVAAF 6 AF080119/1-126 84.9% 19.6% LFDRDYGSNNAF-------KIDFVVEG-FMDALQRSRS-----SFKLLFVYLHSPDHP--DTPVFCG--GTLCNEAVVAF 7 AE003660/1-127 85.6% 21.6% KFIREYYERYP--------EHPVFYQGTYAQALNDAKQ-----ELRFLIVYLHKDPAKNPDVESFCR--NTLSARSVIDY 8 AB020694/1-126 85.6% 23.1% SFMHSFEEKYGR-------AHPVFYQGTYSQALNDAKR-----ELRFLLVYLHGDDHQ--DSDEFCR--NTLCAPEVISL 9 Z97335b/1-124 81.5% 8.6% GQIASSGLTK-----------KLMIKRNMWAKVRGVAM-------MNPVEHP-HGGRTELGSHILNR--DVWANDAVSRT 10 AC010657/1-124 81.5% 7.9% SLASLYRPPF-----------HLMFQGSFEQAKTTSSS-------QDKWLLVNLQSTTEFSSHMLNR--DTWANDAVSQT 11 AE003608/1-123 80.8% 9.9% RLGDLFRPPT-----------DILYSGSLTAAREFATK-------RQRWLLVNVQD-ENFQSQTLNR--DVWSDKELKKL 12 AB018337/1-124 81.5% 9.3% TLADLFRPPI-----------DLMHKGSFETAKECGQM-------QNKWLMINIQNVQDFACQCLNR--DVWSNEAVKNI 13 AL031545/1-130 86.3% 12.7% KLVQNLEEQYG------TEHIDFFTDGGYMEALTRIKR-----NYGVALLFFTSSKND--DSETFSR--SVLMNQELKEF 14 AC016161/1-117 79.5% 15.0% EVEKTYKLKVP------------FFQGTLEEAKRHAQQ-----DSRYLVLYLHSPRHEN--TEAYLR--EVLATDEIIAL 15 X95644/1-127 85.6% 16.2% SFGSLYNPENG-------TFSKSIMQNSYTELLDACSE-----QVKFGVIYLHDPLLD--NHMDYVN--KILCSEAFVNM 16 O14048 82.2% 12.7% RLAKLFRPPYD-----------IISNLSLDEARIEASS-------QKRWILVNLQTSTSFECQVLNR--DLWKDESVKEV 17 Q06682 84.2% 11.3% KLALLFRPPFS-----------IMSKLDLDAAKQKARA-------KQKWIMINIQDSGIFQCQALNR--DLWSSRPVKTI 18 O23283a 59.6% 9.5% RLSSLYRPPPS-----------LFFHGSFEDAKATSSR-------EDLWLLV---------------------------- consensus/100% .......................h....h.thh...............h.h............................. consensus/90% th.t.ht................h....h.ttht.s.........t.hhhhh............h.t..thh.t..h.th consensus/80% ph.t.at..h.............hhptsh.tAhptut........p.hhlhlp..t.....s..hsp..phhtsc.l.th consensus/70% phhp.aps.hs...........hhhpsshtpAhppupp.......c.hhlhlp.tpp...tspshsp..phhssctlhph cov pid 81 . 1 . . . . : . 160 1 AF132938/1-146 100.0% 100.0% LSQ-NFITWAWDLTKDSNRARFLTMCNRHFGSVVAQTIR---TQKTDQFPLFLIIMGKR---SSNEVLNVIQG-NTTVDE 2 AE003808/1-149 100.0% 42.3% FKE-KFVLYGWDMTYESNKDMFLSSLTACISSNASLTAR---NIKLDKLPAIMLVGKSRQLGSNCEVLSVIHG-NIGLDD 3 AF026210/1-156 100.0% 30.8% IRH-QYVLFPWDITSDSNLMLFLEYLQAANMGDVRTIIQRLAMSKIESFPLMAIVVKER---NSYRLVDYCRG-TDTSDQ 4 U41026/1-157 100.0% 22.9% LAT-KYILYPWDVTEPRNLDRFLRILTDSNMSSMHYNLKSFNESESHRFPYIAIVLRKG---NWFEVIREVNG-TSDLNE 5 AC051634/1-124 83.6% 21.6% IDE-NFVAWGGSIRRTEGFKMSNSLN-------------------ASRFPFCAVVMASTN--QRIVLLRQIEG-PKSPEE 6 AF080119/1-126 84.9% 19.6% VNE-NFVSWGGSIRSSEGFKMSNSLK-------------------ASRFPFCAVVMPAAN--QRIALLQQVEG-PKSPEE 7 AE003660/1-127 85.6% 21.6% INT-HTLLWGCDVATPEGYRVMQSIT-------------------VRSYPTMVMISLRA---NRMMIVGRFEG-DCTPEE 8 AB020694/1-126 85.6% 23.1% INT-RMLFWACSTNKPEGYRVSQALR-------------------ENTYPFLAMIMLKD---RRMTVVGRLEG-LIQPDD 9 Z97335b/1-124 81.5% 8.6% IES-HFIVWQVYDDTNEGQKISSFYK-------------------IEAPPPVVFVINPITGQKMHMWSGVIEA-ESIVED 10 AC010657/1-124 81.5% 7.9% IKA-NFIFWQVYDDTTEGRKVCTYYK-------------------LESIP-VVLVIDPTTGQRMRMWTGMVDP-ENLLED 11 AE003608/1-123 80.8% 9.9% IRR-QFTFWQVDNDTSEGRRFVAFYH-------------------CATLP-YICVIDPRTGEEVWRSAEPKLE-NILPDL 12 AB018337/1-124 81.5% 9.3% IRE-HFIFWQVYHDSEEGQRYIQFYK-------------------LGDFP-YVSILDPRTGQKLVEWHQLDVS-SFLDQV 13 AL031545/1-130 86.3% 12.7% LNRRNILCWTGDVCEDEAFRGSRQFH-------------------CTKFPSAVLVMYSP-QLSELVVAAQLHG-CLDSSS 14 AC016161/1-117 79.5% 15.0% LHE-SSVLFGVSVADTEGTLLAEELG-------------------AHAFPFVAALVGNT-------VVLRLQG-YHSRET 15 X95644/1-127 85.6% 16.2% IRKYQVLLWYGDVTTSEGLQVSNALK-------------------IRQYPLLGIISLKA--EKKIELIARVEG-SIS-NY 16 O14048 82.2% 12.7% IRA-HFLFLQLLDDEEPGMEFKRFYP-------------------VRSTPHIAILDPRTG-ERVKEWSKSFTP-ADFVIA 17 Q06682 84.2% 11.3% IKE-NFVFLQYQYESRNAQPYLQFYHLN----------------NKDDLPHIAILDPITG-ERVKQWNRVVPIPEQFISE 18 O23283a 59.6% 9.5% -----------YDDTSEGQKISTFYK------------------IDSVPPVVLLIDPITG-QKMRMWSGVIEP-QGFLED consensus/100% .............t...s..h.........................t..P.hh.l......................... consensus/90% htt.p.h.h.h..tp.ps..h...h.....................tt.P.hhhl.......p...h.t.h.......p. consensus/80% lpp.phlha.h..sppps.th...hh...................hpphP.hhhl...t...p.h.h.t.hps.....pt consensus/70% lpp.phlhathphspscuhch.p.hp...................hpphPhhshlh..t...phh.hht.lpu.p...pp cov pid 161 ] 166 1 AF132938/1-146 100.0% 100.0% LMMRLM 2 AE003808/1-149 100.0% 42.3% LLTRLI 3 AF026210/1-156 100.0% 30.8% VMEKLL 4 U41026/1-157 100.0% 22.9% VVNALY 5 AC051634/1-124 83.6% 21.6% MITTLQ 6 AF080119/1-126 84.9% 19.6% MLAILQ 7 AE003660/1-127 85.6% 21.6% LLRRLQ 8 AB020694/1-126 85.6% 23.1% LINQLT 9 Z97335b/1-124 81.5% 8.6% LMMFWD 10 AC010657/1-124 81.5% 7.9% LVPFMD 11 AE003608/1-123 80.8% 9.9% RQFLKE 12 AB018337/1-124 81.5% 9.3% TGFLGE 13 AL031545/1-130 86.3% 12.7% IITNLT 14 AC016161/1-117 79.5% 15.0% FRREWR 15 X95644/1-127 85.6% 16.2% KAQDLE 16 O14048 82.2% 12.7% LNDFLE 17 Q06682 84.2% 11.3% INEFLA 18 O23283a 59.6% 9.5% LMKYMD consensus/100% h...h. consensus/90% h...h. consensus/80% hh..h. consensus/70% hhthhp