Family alignment for the UBQ domain, displayed in

                     cov    pid  1 [        .         .         .         .         :         .         .         . 80 
 1 O14562-379     100.0% 100.0%    --VDLKIIWN--------KTKHDVKFPLDSTGSELKQKIH---SITGL---PPAM--QKVMYKGL---------------    
 2 BAT3_HUMAN      95.7%  23.0%    LEVLVKTLDS-------QTRTFIVGAQM--NVKEFKEHIR---ASVSI---PSEK--QRLIYQGRV--------------    
 3 UBIL_CAEEL      90.0%  21.9%    -MVFVKTLH--------RTLFLEVAANE--DVLSIKQKIE---AAEGI---PAEE--QRLCYAGRQ--------------    
 4 TPUBIEXTA1      95.7%  14.7%    MYIFAKILN-------GKTMTLEVTHSD--TIEKVKSLIQ---NKEGI---LIEQ--QRLLHTGKN--------------    
 5 YO25_CAEEL      97.1%  14.9%    IRVTLKTLDD-------REATVTIGLQD--TIQSLIDLGR---REMNI---QSGF--QRVIAGGRV--------------    
 6 JN0673          97.1%  16.2%    MELFIETLTG-------TCFELRVSPYE--TVTSVKSKIQ---RLEGI---PVAQ--QHLIRNNME--------------    
 7 R23A_HUMAN      97.1%  23.4%    VTITLKTLQQ-------QTFKIRMEPDE--TVKVLKEKIE---AEKGRDAFPVAG--QKLIYAGKI--------------    
 8 UBPF_YEAST      95.7%  21.6%    FEFNIRHSG--------KVYPITLSTDA--TSADLKSKAE---ELTQV---PSAR--QKYMVKGGL--------------    
 9 S55242/2        97.1%  20.3%    TMIKVKTLTG-------KEIEIDIEPTD--TIDRIKERVE---EKEGI---PPVQ--QRLIYAGKQ--------------    
10 S55243          97.1%  17.6%    IQIYAKTLTE-------KTITLDVETSD--SIHNVKAKIQ---NKEGI---PLDQ--QRLIFAGKQ--------------    
11 AB002585/1      97.1%  13.9%    VKVQVKQLQG-------MSLTRKVHPST--TVWELKGEIE---KEWCI---PRYQ--QRLALQDNPSNLPA---------    
12 ATFCA413        98.6%  14.7%    FRVICVPDGG-------EVIKITVQSLS-ENVASLKEKIA---EVVQI---QANK--QTLRGLRAV--------------    
13 AB002585        95.7%  21.6%    MEVLVKDSN--------KTTVYTVRPTD--TVKQLKQQIY---ARQHV---PVEQ--QRLTYETKE--------------    
14 CE1             92.9%  19.5%    IKVHVKSPS--------NKYDVEIAADA--SVSELKDKVLVFVPTAN-----KEQ--VCIIYTGKI--------------    
15 YD11_SCHPO      95.7%  21.4%    ITLFIKSSS--------ANAERRINPQW--TVSQLKTKLV---PIVGT---PEQY--QKLTYEPASS-------------    
16 S43586          95.7%  22.4%    ITVSSVMQG-------VKQIVVEMKDKE--TVSILKNRIE---QETEV---LTNR--QVLLFKGME--------------    
17 G2707597-145    95.7%  13.3%    INLKVAGQD-------GSVVQFKIKRHT--PLSKLMKAYC---ERQGL---SMRQ--IRFRFDGQP--------------    
18 BVDCP1          95.7%  17.3%    GLDFVKSQA--------EKIRTTPLFKE--NVEAAKGYVHQ--DKEGI---PPDQ--QRLIFAGKQ--------------    
19 G2746819-232    97.1%  20.3%    LTVSVKTLFG-------KTIPISIKNTD--TVETLKFKVQ---NKHGV---PPDQ--QRLIFGRAQ--------------    
20 PVU77939s       92.9%   6.8%    RGAREKTAPR-------VLKAYQVFVSH--MVEGVDARLL---DVQKG-----H---KGAQCFAKQ--------------    
21 S51888          97.1%  20.8%    VHLTLKKIQAP-----KFSIEHDFSPSD--TILQIKQHLIS--EEKAS---HISE--IKLLLKGKV--------------    
22 UBIL_HUMAN      97.1%  18.9%    MQLTVKALQG-------RECSLQVPEDE--LVSTLKQLVS---EKLNV---PVRQ--QRLLFKGKA--------------    
23 RATRPIT         95.7%  21.6%    VFLMIRRHK--------TTIFTDAKESS--TVFELKRIVE---GILKR---PPEE--QRLYKDDQL--------------    
24 E1250010-77     95.7%  16.9%    YRIRVTTVD-------QKVGIFQVPRTK--TVLELKELIA---VTFEA---PADR--LKLIHAGRV--------------    
25 G2746809-229    95.7%  18.7%    STLFDNSFE--------NGSTLRLENTD--TVETLKLKIQ---DKEGI---PPDQ--QRLIYQGSQ--------------    
26 O15205-79       92.9%  10.4%    LCVHVRSEE-------WDLMTFDANPYD--SVKKIKEHVR----SKTKV--PVQ---DQVLLLGSK--------------    
27 SMT3_ARATH-89   97.1%  10.8%    INLKVKGQDG-------NEVFFRIKRST--QLKKLMNAYC---DRQSV---DMNS--IAFLFDGRR--------------    
28 A55670          97.1%  15.2%    LSVIVTHSN--------ERYDLLVTPQQ-GNSEPVVQDLAQ--LVEEA--TGVPLPFQKLIFKGKS--------------    
29 DCRAD23II       97.1%  16.9%    MKLTVKTLKG-------SHFEIRAQPND--TVMAIKKNIE---DLQGKDNYPCGQ--QLLIHNGKV--------------    
30 OSU63530        97.1%  18.2%    MKISVKTLKG-------STFQIEVDSAQ--KVADVKRIIE---TTQGQHIYPAEQ--QMLIHQGKV--------------    
31 CEF25D72        98.6%   8.4%    VELTIRQAYQ------AESDLKFSCPTS-WTIKEVKEHVK---NCLNN--HPEVV-TQRLIFSGAS--------------    
32 CEZK203         97.1%  19.7%    LSVTFRTLTQ-------VNFNLELNEDQ--TIAEVKALVA---SEKGDD-YAPEL--QKLIYNGKI--------------    
33 S63999          95.7%  10.8%    INLKVSDGS--------SEIFFKIKKTT--PLRRLMEAFA---KRQGK---EMDS--LRFLYDGIR--------------    
34 INI1_HUMAN      97.1%  12.2%    LSILVRNNKG-------RSSTYEVRLTQ--TVAHLKQQVS---GLEGV---QDDL--FWLTFEGKP--------------    
35 INI1_HUMAN/2    97.1%  14.5%    WDLTVKMLAG-------NEFQVSLSSSM--SVSELKAQIT---QNIGV---HAFQ--QRLAVHPSGV-------------    
36 CELC26F14       90.0%  21.6%    MQIFLLGLDN-------TTHTLDVDAST--TLSAIKGVIG---AGE-------E---FSISYGSKV--------------    
37 YAUG_SCHPO      97.1%  18.9%    ISLTIKAAND-------QKYAVTVDSES--SVLALKEAIA---PVADI---EKER--QRLIYAGRV--------------    
38 S26434          97.1%  20.3%    WDLKVKMLGG-------NDFLVSVTNSM--TVSELKKQIA---QKIGV---PAFQ--QRLAHQTA---------------    
39 S50096          97.1%  20.3%    PQAPEHGMDG-------SIVQFTIQVTA--PMSELKQQIQ---DRYGM---PVGK--QKLMSDGLF--------------    
40 S60735          97.1%  21.6%    QDKTEWKLNG-------QVLVFTLPLTD--QVSVIKVKIH---EATGM---PAGK--QKLQYEGIF--------------    
41 S55243/4        97.1%  13.9%    MYIFVKNLPYN--SFTGENFILEVESSD--TIDNVKAKLQ---DKERI---PMDL--HRLIFAGKP--------------    
42 CEU32223        92.9%  21.3%    PIVNVKWQK-------EKYV-VEVDTSA--PPMVFKAQLF---ALTQV---VPER--QKVVIMGRT--------------    
43 CELC16C810      95.7%  13.4%    FEILVIWTESCGIFASENHWKLRVCGSD--TIRHIKLRIN---SLAKV----DISS-FRMVLRGKL--------------    
44 CELC16C811      95.7%   6.7%    FEIFVFDDY--------KYHAVEVRNSY--LIRYVRVKVA---NLLNN--DLVES--FNLYYGGQK--------------    
45 CELC16C812      95.7%   9.5%    FQIFVKVLG--------VSYAFKIHRED--TVFDIKNDIE---HRHDI---PQHS--YWLSFSGKR--------------    
46 MMU76759        95.7%   9.5%    FTLKIRCRA--------DLVRLPVRMSE--PLQNVVDHMA---NHLGV---SPNR--ILLLFGESE--------------    
47 UBIM_HUMAN      95.7%  19.2%    MQLFVRAQE---------LHTFEVTGQE--TVAQIKAHVA---SLEGI---APED--QVVLLAGAP--------------    
48 CELC16C85       92.9%  16.2%    LCIAVSMPG--------RLFSIGANKME--SVEQLKMKIE---CQTGI---PRTK--FWLRLHGKP--------------    
49 CESMT3          97.1%  14.9%    IKIKVVGQDS-------NEVHFRVKYGT--SMAKLKKSYA---DRTGV---AVNS--LRFLFDGRR--------------    
50 YKA4_CAEEL      92.9%  21.1%    ILIKLKFMN--------DTEKNTYASLE-DTVAKFKVDHF-----TNL----ANQV-IRLIYQGQL--------------    
51 SPAC6G97        95.7%  25.7%    IPIAIRWQG--------KKYDLEIEPNE--TGSTLKHQLY---SLTQV---PPER--QKVIVKGGQ--------------    
52 HUMORF12        98.6%  12.7%    VTLLVKSPNQ-------RHRDLELSGDRGWSVGHLKAHLS---RVYPE--RPRPED-QRLIYSGKL--------------    
53 DSK2_YEAST      95.7%  23.0%    LNIHIKSGQ--------DKWEVNVAPES--TVLQFKEAIN---KANGI---PVAN--QRLIYSGKI--------------    
54 RA23_YEAST      97.1%  20.3%    VSLTFKNFKK-------EKVPLDLEPSN--TILETKTKLA---QSISC---EESQ--IKLIYSGKV--------------    
   consensus/100%                  ..................................h...h....................h....................    
   consensus/90%                   ..l.hh.............h.hpht......h..hh..h.......t...........hhhhts................    
   consensus/80%                   htlhlp..t........p.h.hplt.pp..sl.tlKttlt...t..th.....t....plhhtut...............    
   consensus/70%                   hplhl+t.p........pphthplp.sp..oltplKtplt...phtsh...s.tp..p+LhatGp...............    

                     cov    pid 81          .         1         .         .     ] 126
 1 O14562-379     100.0% 100.0%    --------------VPED---KTLREIKVTSGA------KIMVVGS    
 2 BAT3_HUMAN      95.7%  23.0%    --------------LQDD---KKLQEYNVGGK-------VIHLVER    
 3 UBIL_CAEEL      90.0%  21.9%    --------------LED-------SDCGIDSEA------TIYVNLE    
 4 TPUBIEXTA1      95.7%  14.7%    --------------LENQ---RTLSYYSIQIQS------TLQLEIR    
 5 YO25_CAEEL      97.1%  14.9%    --------------LNST---QTVQAAGISDGQ------TVHLVDR    
 6 JN0673          97.1%  16.2%    --------------LEDE---CSLSGYNISEGC------TLKMVLA    
 7 R23A_HUMAN      97.1%  23.4%    --------------LSDD---VPIRDYRIDEKN------FVVVMVT    
 8 UBPF_YEAST      95.7%  21.6%    --------------SGEE---SIKIYPLIKPGS------TVMLLGT    
 9 S55242/2        97.1%  20.3%    --------------LADD---KTAKDYAIEGGS------VLHLVLA    
10 S55243          97.1%  17.6%    --------------LEDG---LTLADYNIQKES------TLHLVLR    
11 AB002585/1      97.1%  13.9%    --------------LRDG---DSLAAHGLFYDI------VLLLLCT    
12 ATFCA413        98.6%  14.7%    --------------LKDN--NRSLAYYNVKAGD------ILILDVV    
13 AB002585        95.7%  21.6%    --------------LENH---HTLEHYHVQPRS------TIYLLLR    
14 CE1             92.9%  19.5%    --------------LKDE---ETLTQHKIADGH------TVHLVIR    
15 YD11_SCHPO      95.7%  21.4%    ------TVPGHVFTSEEEN--LDLGEFKLQPLG------TIVVEDT    
16 S43586          95.7%  22.4%    --------------LKDN--NKTMTDCGINSDA------KITMNVK    
17 G2707597-145    95.7%  13.3%    --------------INET---DTPAQLEMEDED------TIDVFQQ    
18 BVDCP1          95.7%  17.3%    --------------LEDG---RTLSDYNIQKES------TLHLVLR    
19 G2746819-232    97.1%  20.3%    --------------LEND---RALFAYNIRDED------IIHLVSR    
20 PVU77939s       92.9%   6.8%    --------------LEDG---RTLADYNIQKES------TLHLVLR    
21 S51888          97.1%  20.8%    --------------LHDN---LFLSDLKVTPAN------STITVMI    
22 UBIL_HUMAN      97.1%  18.9%    --------------LADG---KRLSDYSIGPNS------KLNLVVK    
23 RATRPIT         95.7%  21.6%    --------------LDDG---KTLGECGFTSQT------ARPQAPA    
24 E1250010-77     95.7%  16.9%    --------------LRNE---TPLEEILHDATD----LVTFHLVIA    
25 G2746809-229    95.7%  18.7%    --------------LEDD---HFVDEVLNLNIV-----NLLLVILL    
26 O15205-79       92.9%  10.4%    -------------ILKPR---RSLSSYGIDKEK------TIHLTLK    
27 SMT3_ARATH-89   97.1%  10.8%    --------------LRAE---QTPDELDMEDGD------EIDAMLH    
28 A55670          97.1%  15.2%    --------------LKEM--ETPLSALGMQNGC------RVMLIGE    
29 DCRAD23II       97.1%  16.9%    --------------LKDE---STLAESKISEDG------FLVVMLG    
30 OSU63530        97.1%  18.2%    --------------LKDD---TTLDENKVLENS------FLVIMLR    
31 CEF25D72        98.6%   8.4%    --------------LNNE---QVLADVLRERNHVAGEQIFFHLMIA    
32 CEZK203         97.1%  19.7%    --------------LDDS---VKVGEVGFDSSK------FVVVMLS    
33 S63999          95.7%  10.8%    --------------IQAD---QTPEDLDMEDND------IIEAHRE    
34 INI1_HUMAN      97.1%  12.2%    --------------LEDQ---LPLGEYGLKPLS------TVFMNLR    
35 INI1_HUMAN/2    97.1%  14.5%    -------------ALQDR---VPLASQGLGPGS------TVLLVVD    
36 CELC26F14       90.0%  21.6%    --------------LSEE---LTLGECQIESLS------TLSVNGR    
37 YAUG_SCHPO      97.1%  18.9%    --------------LKDE---ESLKTYKIQDGH------SIHLVKT    
38 S26434          97.1%  20.3%    -------------VLQDG---LTLSSLGLGPSS------TVMLVVQ    
39 S50096          97.1%  20.3%    --------------VKDN---MSSAFYNLADRT------AIYLQVK    
40 S60735          97.1%  21.6%    --------------IKDS---NSLAYYNMANGA------VIHLALK    
41 S55243/4        97.1%  13.9%    --------------LEGG---RTLAHYNIQKGS------TLYLVTR    
42 CEU32223        92.9%  21.3%    --------------LGDD----DWEGITIKENM------TIMMMGS    
43 CELC16C810      95.7%  13.4%    --------------LEDH---HSLAYYNIQEGA------LIWLYSH    
44 CELC16C811      95.7%   6.7%    --------------LQDN---RSIGSYNIDQSR------EIYLKKK    
45 CELC16C812      95.7%   9.5%    --------------LEDH---CSIGDYNIQKSS------TITMYFR    
46 MMU76759        95.7%   9.5%    --------------LSPT---ATPSTLKLGVAD------IIDCVVL    
47 UBIM_HUMAN      95.7%  19.2%    --------------LEDE---ATLGQCGVEALT------TLEVAGR    
48 CELC16C85       92.9%  16.2%    --------------LYDD---KKLADYKWDTS--------VELLVR    
49 CESMT3          97.1%  14.9%    --------------INDD---DTPKTLEMEDDD------VIEVYQE    
50 YKA4_CAEEL      92.9%  21.1%    --------------LRED--HRTLEEYGLQPGS------IVHCHIS    
51 SPAC6G97        95.7%  25.7%    --------------LKDD---VLLGSVGIKPNA------TLLMMGT    
52 HUMORF12        98.6%  12.7%    --------------LLDHQ---CLRDLLPKQEKR----HVLHLVCN    
53 DSK2_YEAST      95.7%  23.0%    --------------LKDD---QTVESYHIQDGH------SVHLVKS    
54 RA23_YEAST      97.1%  20.3%    --------------LQDS---KTVSECGLKDGD------QVVFMVS    
   consensus/100%                  ........................................h.....    
   consensus/90%                   ..............ltpt......t.htht.tt.......l.h..t    
   consensus/80%                   ..............Lpsp....shtththt.tt......hl.hhhp    
   consensus/70%                   ..............Lp-p...pslsphtlptts......hlhlhhp